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Tracking influenza a virus infection in the lung from hematological data with machine learning
(2022)
The tracking of pathogen burden and host responses with minimal-invasive methods during respiratory infections is central for monitoring disease development and guiding treatment decisions. Utilizing a standardized murine model of respiratory Influenza A virus (IAV) infection, we developed and tested different supervised machine learning models to predict viral burden and immune response markers, i.e. cytokines and leukocytes in the lung, from hematological data. We performed independently in vivo infection experiments to acquire extensive data for training and testing purposes of the models. We show here that lung viral load, neutrophil counts, cytokines like IFN-γ and IL-6, and other lung infection markers can be predicted from hematological data. Furthermore, feature analysis of the models shows that blood granulocytes and platelets play a crucial role in prediction and are highly involved in the immune response against IAV. The proposed in silico tools pave the path towards improved tracking and monitoring of influenza infections and possibly other respiratory infections based on minimal-invasively obtained hematological parameters.
In high multiplicity nucleus-nucleus collisions baryon-antibaryon annihilation and regeneration occur during the final hadronic expansion phase, thus distorting the initial equilibrium multiplicity ratios. We quantify the modifications employing the hybrid UrQMD transport model and apply them to the grand canonical partition functions of the Statistical Hadronization Model(SHM). We analyze minimum bias and central Pb+Pb collision data at SPS and LHC energy. We explain the Pion to Proton ratio puzzle. We also reproduce the deuteron to proton ratio at LHC energy by the SHM, and by UrQMD after attaching a phase space coalescence process. We discuss the resulting (T,μB) diagram.
We apply a coupled transport-hydrodynamics model to discuss the production of multi-strange meta-stable objects in Pb + Pb reactions at the FAIR facility. In addition to making predictions for yields of these particles we are able to calculate particle dependent rapidity and momentum distributions. We argue that the FAIR energy regime is the optimal place to search for multi-strange baryonic object (due to the high baryon density, favoring a distillation of strangeness). Additionally, we show results for strangeness and baryon density fluctuations. Using the UrQMD model we calculate the strangeness separation in phase space which might lead to an enhanced production of MEMOs compared to models that assume global thermalization.
We present results on hadronic resonance production in high energy nuclear collisions from the UrQMD hybrid model. In particular we are interested in the effect of the final hadronic stage on the properties of resonances observable at RHIC and LHC experiments. We investigate weather these observable properties can be used to pinpoint the transition energy density from the QGP phase to the hadronic phase.
The aim of this paper is to understand resonance production (and more generally particle production) for different collision systems, namely proton-proton (pp), proton-nucleus (pA), and nucleus-nucleus (AA) scattering at the LHC. We will investigate in particular particle yields and ratios versus multiplicity, using the same multiplicity definition for the three different systems, in order to analyse in a compact way the evolution of particle production with the system size and the origin of a very different system size dependence of the different particles.
A unified chiral mean field approach is presented for QCD thermodynamics in a wide range of temperatures and densities. The model simultaneously gives a satisfactory description of lattice QCD thermodynamics and fulfills nuclear matter and astrophysical constraints. The resulting equation of state can be incorporated in relativistic fluid-dynamical simulations of heavy-ion collisions and neutron stars mergers. Access to different regions of the QCD phase diagram can be obtained in simulations of heavy-ion data and observations of neutron star mergers.
It is shown that the inclusion of hadronic interactions, and in particular nuclear potentials, in simulations of heavy ion collisions at the SPS energy range can lead to obvious correlations of protons. These correlations contribute significantly to an intermittency analysis as performed at the NA61 experiment. The beam energy and system size dependence is studied by comparing the resulting intermittency index for heavy ion collisions of different nuclei at beam energies of 40A, 80A and 150A GeV. The resulting intermittency index from our simulations is similar to the reported values of the NA61 collaboration, if nuclear interactions are included. The observed apparent intermittency signal is the result of the correlated proton pairs with small relative transverse momentum Δpt, which would be enhanced by hadronic potentials, and this correlation between the protons is slightly influenced by the coalescence parameters and the relative invariant four-momentum qinv cut.
Results on proton and Λ flow, calculated with the UrQMD model that incorporates different realistic density dependent equations of state, are presented. It is shown that the proton and hyperon flow shows sensitivity to the equation of state and especially to the appearance of a phase transition at densities below 4n0. Even though qualitatively hyperons and protons exhibit the same beam energy dependence of the flow, the quantitative results are different. In this context it is suggested that the hyperon measurements can be used to study the density dependence of the hyperon interaction in high density QCD matter.
The effect of nuclear interactions on measurable net-proton number fluctuations in heavy ion collisions at the SIS18/GSI accelerator is investigated. The state of the art UrQMD model including interaction potentials is employed. It is found that the nuclear forces enhance the baryon number cumulants, as predicted from grand canonical thermodynamical models. The effect however is smeared out for proton number fluctuations due to iso-spin randomization and global baryon number conservation, which decreases the cumulant ratios. For a rapidity acceptance window larger than Δy > 0.4 the effects of global baryon number conservation dominate and all cumulant ratios are significantly smaller than 1.
The core of neutron stars consists of extremely dense matter at relatively low temperatures. In such an environment the appearance of exotic strongly interacting particles beyond nucleons appears quite natural. In this context we consider hybrid stars that, in addition to nucleons and hyperons, also contain quarks as further degrees of freedom. We investigate the impact of quarks on the properties of these compact stars. In addition, we discuss new constraints on such objects arising from the recently measured gravitational wave signal of two merging neutron stars.