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Mid-rapidity transverse mass spectra and multiplicity densities of charged and neutral kaons are reported for Au + Au collisions at √sNN = 130 GeV at RHIC. The spectra are exponential in transverse mass, with an inverse slope of about 280 MeV in central collisions. The multiplicity densities for these particles scale with the negative hadron pseudo-rapidity density. The charged kaon to pion ratios are K+/π− = 0.161± 0.002(stat) ± 0.024(syst) and K−/π− = 0.146± 0.002(stat) ± 0.022(syst) for the most central collisions. The K+/π− ratio is lower than the same ratio observed at the SPS while the K−/π− is higher than the SPS result. The ratios are enhanced by about 50% relative to p + p and p¯ + p collision data at similar energies.
[Abstract] Occurrence of hepatitis B virus (HBV) reactivation following kidney transplantation
(2004)
Women with thrombophilic defects have been shown to be at increased risk, not only of pregnancy associated thromboembolism but also of other vascular complications of pregnancy, including preeclampsia and fetal loss. First trimester fetal loss is associated with factor V Leiden mutation, activated protein C resistance without factor V Leiden mutation and prothrombin G20210A mutation. Late nonrecurrent fetal loss is associated with factor V Leiden mutation, prothrombin mutation and protein S deficiency. Concerning acquired thrombophilia, recurrent fetal loss is a well-documented finding in patients with antiphospholipid antibodies. Associations between thrombophilia polymorphisms and an increased risk of intrauterine growth restriction have been discussed in small series of cases but could not be confirmed in large scale studies. Frequencies for anticardiolipin antibodies or lupus anticoagulants and antinuclear antibodies were significantly higher in women with infants small for gestational age compared to controls. Concerning preeclampsia, gestational hypertension and thrombophilia, a number of studies have examined these relationships with conflicting results. For factor V Leiden, MTHFR C677T and prothrombin mutation, no association with preeclampsia was observed, when severe cases were excluded. If studies were restricted to those of severe preeclampsia, an association with the factor V Leiden mutation was apparent and, to a lesser extent, with the MTHFR-mutation. For antithrombotic therapy, it was shown that in women with antiphospholipid syndrome and recurrent pregnancy loss, unfractionated heparin plus lowdose aspirin results in significantly better gestational outcome than lowdose aspirin alone. Concerning therapy of women with inherited thrombophilia and pregnancy loss, only small, uncontrolled studies are available, demonstrating improved pregnancy outcome when low molecular weight heparin (LMWH) is used for treatment. In conclusion, heritable thrombophilia and the antiphospholipid-syndrome are major causes of fetal loss after exclusion of other underlying pathologies like chromosomal abnormalities, and screening should be recommended. LMWH with or without aspirin may be used for treatment. There is little value in antenatal screening for prothrombotic polymorphisms to predict the development of small for gestational age infants, preeclampsia or gestational hypertension.
The genetic variability of hepatitis B virus (HBV) represents a challenge for the sensitivity of immunodiagnosis, especially for the detection of surface antigen (HBsAg). There are two types of variants of HBV. Naturally occurring variants are the results of random changes selected over years of population pressure. These variants include HBV genotypes and unusual sequences, which may be poorly detected by immunoassays. The selected variants are mutants that arise in individuals under medically (vaccine, hepatitis B immune globulin and antiviral therapy) or naturally (chronic hepatitis B) induced immune pressure. HBV S-gene mutants have been identified in successfully immunized people worldwide. Based on the assumption that current vaccines containing S protein do not cross-protect against S gene mutants, a mathematical model predicts the disappearance of wild-type HBV in areas with HBsAg endemicity and the emergence of S gene mutants in approximately 100 years as a consequence of universal HBV vaccination. Mutant viruses may escape detection by commercial HBsAg kits. There are several reports on HBsAg negative carriers (HBVDNA positive) of S gene mutants with immunosilent infection or ‘‘unusual’’ serologic constellations. Although S gene mutants have been found to be associated with a more severe clinical course of HBV infection and hepatocellular carcinoma, the clinical significance of the genetic variability of HBV genotypes and HBsAg mutants needs to be further investigated. Detection of HBsAg needs to be improved by the introduction of new HBsAg assays able to recognize S gene mutants described so far and with a lower detection threshold than current immunoassays in order to detect smallest amounts of HBsAg in low-level carriers. There is also a need for more complete epidemiological data on the prevalence of HBsAg mutants in Western Europe and assays for the (differential) screening of mutants need to be developed and evaluated.
Partial melting of crustal and mantle rocks under pressure from impedance spectroscopy measurements
(2004)
The purpose of this work is to achieve a better understanding of the physical properties of rocks during partial melting processes. The electrical conductivity of some crustal and upper mantle rocks was measured prior and above the melting under pressure. The variations of the electrical conductivity were compared with the distribution of melt in partially molten rock samples. The electrical conductivity was estimated from the impedance spectroscopy at temperatures between 800 and 1450˚C and at pressures between 0.3 and 2 GPa. These measurements were performed in a piston cylinder apparatus. At temperatures above the melting, samples were equilibrated during a long time and subsequently quenched. Thin sections were prepared and topology, volume fraction and chemical composition of melt was analyzed by using a microprobe. Above the solidus temperature, the electrical conductivity increases for about 1 to 2 orders of magnitude in comparison with non-melted rocks. The "melt effect" seems to reflect the formation of an interconnected network of melt. When a complete melt connectivity is established, the charge transport follows the network of the formed melt films at grain boundaries. Usually, it takes a long time in order to reach a steady state of the electrical resistance in partially molten rocks. Only when a steady state of the electrical resistance is achieved, the bulk conductivity of a sample can be measured properly. The time-independent electrical conductivity were found only after 200 h of annealing time at a desired temperature.
Usually, the measurements of a dihedral angle on grain-liquid interfaces in rocks show that the wetting of grain faces start to develop at temperatures slightly above the solidus temperature. The development of these faces should lead to a continuous melt network even at small melt fractions of few wt.%. This result is not confirmed by our electrical conductivity measurements. The complete interconnection of the melt phase, which was mark by an increase of the electrical conductivity, corresponds to a temperature significantly above the solidus temperature, for at least 30-50˚C. The development of these faces stimulate a significant increase of the electrical conductivity, and corresponds to the occurence of at least 5 wt.% of a melt fraction. This result could be explained by deviations from the textural equilibrium of a melt phase topology in partially molten samples due to heterogeneous grain size distribution, misorientation of grains and anisotropy of the superficial energy of adjacent grain boundaries.
Some mixing models that allow to calculate the electrical conductivity of a composite as a function of a melt fraction were examined and the results of these calculations are discussed.
The experimental results were compared to the conductivity data obtained from magnetotelluric and electromagnetic measurements in the Northern part of mid-Atlantic ridge where a series of magma chambers are presumably located. There is a good agreement between our conductivity values for a melt fraction of 10-13 the conductivity estimated in the Reykjanes ridge zone.
Das westphälische Modell für Staatsinstitutionen, einschließlich nationaler Exekutive, Legislative und Judikative, hat sich aus den Ereignissen europäischer Geschichte heraus entwickelt. Seit dem Ende des Kalten Krieges dient es als grundlegendes Paradigma für Internationale Interventionen zum Wiederaufbau von gescheiterten - oder zum Aufbau von neuen - Staaten. Für die internationale Gemeinschaft fungiert das westphälische Modell als Maß zur Beurteilung ihrer Interventionen, wie zum Beispiel in Somalia, Kambodscha oder den Balkanstaaten. In den meisten Fällen gilt eine durch sie beaufsichtigte oder gar durchgeführte ‚freie und faire’ Wahl als hauptsächliche Massnahme zur Bildung eines ‚westphälischen’ und demokratischen Staates. Die Erfolgsrate solcher internationalen Friedenseinsätze und ‚state-building operations’ ist jedoch enttäuschend. Bei näherer Betrachtung der Misserfolge des letzten Jahrzehnts wird deutlich, daß sich die lokalen Gesellschaftssysteme der betroffenen Bevölkerungen oft beträchtlich von liberaler Demokratie unterscheiden. Dies ist insbesondere der Fall in Gesellschaften deren Ordnung nicht auf Staatsinstiutionen basiert. Ihnen liegen sozio-politische Systeme zugrunde die sich oft mit dem Paradigma des westlichen Staatssystems nur schwer vereinen lassen. Um im Rahmen internationaler Friedenseinsätze erfolgreich Staatstrukturen zu etablieren, ist es daher notwendig lokale Sozialstrukturen und lokale Konzepte politischer Legitimität und Autorität zu addressieren. Erst mit solchem Verständnis ist es möglich einen Staatsapparat in den Augen der Bevölkerung zu legitimieren. Ist Letzteres nicht der Fall, so kann sich eine Regierung zwar in Übereinstimmung mit internationalen Menschenrechten befinden, oder alle wichtigen demokratischen Einrichtungen vorweisen, jedoch dennoch dem Prinzip der Partizipation durch die Bevölkerung widersprechen. Ist dies das Endresultat eines internationalen Friedenseinsatzes, so hat die internationale Gemeinschaft ihre eigenen Werte bestaetigt. Jedoch herrscht kein Vertrauen zwischen der Bevölkerung und Regierung, da letztere nicht kompatibel mit dem Versaendnis der Bürger ist. Der ‚demokratische’ Staat ist nur schwerlich funktionsfähig.Der internationale Einsatz in Osttimor illustriert dieses Problem. Hier wurden die Vereinten Nationen (VN) mit dem Wiederaufbau und der Verwaltung eines Staates betraut (UNTAET ‚Übergangsregierung der Vereinten Nationen in Osttimor’). Zum ersten mal in der Geschichte übernahm die international Gemeinschaft damit die Souveränität über ein territoriales Gebiet...
Fungi belonging to the Rhytismatales (Ascomycota) are parasites or endophytes of plants, some are saprophytes. Their fruiting bodies are localized in different organs of the host plants belonging to many different families of gymnosperms and angiosperms. Many species of Rhytismatales are known on species of Pinaceae, Ericaceae, and Poaceae. These fungi usually have ascomata that are more or less embedded in host tissue and open by longitudinal or radial splits. They have a more or less carbonized covering stroma, thin-walled, iodine negative asci, and ascospores usually covered by gelatinous sheaths.
In the present study, two lists of species of Rhytismatales in China are presented. One is based on literature and includes 103 species in 15 genera. The second one contains the names of the species in the present study, 57 species in 20 genera based on 90 specimens I collected in the Yunnan and Anhui province in China during July to August in 2001. 31 species in the second list are new species or new records for China, so we presently know 134 species in 22 genera of Rhytismatales for China. 28 new species of Rhytismatales are proposed, 21 species from the Yunnan province and seven from the Anhui province. Among them, three new species are proposed in three new genera, Nematococcomyces, New Genus 1, and New Genus 2, respectively. The 28 new species are Cerion sp., Coccomyces spp. 1-2, Colpoma spp. 1-2, Hypoderma spp. 1-6, Lirula sp., Lophodermella sp., Lophodermium spp. 1-5, Nematococcomyces rhododendri C.-L. Hou, M. Piepenbr. & Oberw., Neococcomyces sp., New Genus 1 sp., New Genus 2 sp., Rhytisma spp. 1-2, Soleella sp., Terriera spp. 1-2, and Therrya sp. The genus Davisomycella is proposed as a synonym of Lophodermella based on observations of the morphology, ecology, and the infected organ. The four genera Cerion, Naemacyclus, Terriera, and Therrya, and three species, Hypoderma rubi, Lophodermium uncinatum, and Naemacyclus pinastri, are reported for the first time for China. All the new taxa, the newly recorded ones, as well as six species which had not been illustrated in detail before, are carefully described and illustrated by line drawings in the present study.
The results show that species of Rhytismatales are highly diverse especially in the natural vegetation in high mountainous areas in China. Most species of Rhytismatales are conspicuously host specific. The diversity of Rhytismatales is closely related to that of the preferred hosts, which are members of Pinaceae, Ericaceae, and Cupressaceae. Based on the detailed morphological observations, the significance of different morphological characteristics for a natural classification of Rhytismatales is discussed. Genera are traditionally defined by character states of a few characteristics, namely the opening patterns of ascomata, the depth of ascomata in the host tissue, and asci and ascospore shape. Data from collections in the field, detailed morphological investigation, and molecular data show, however, that the ecology, the infected organ, the host relationship, and many other characteristics have to be combined to circumscribe natural groups.
The discussion of the systematic significance of morphological characteristics is complemented by molecular data. In the present study, partial nuclear large subunit rDNA sequences of 52 specimens representing 38 species are used to analyse phylogenetic relationships for members of Rhytismatales.
Most species of Rhytismatales are placed in a monophyletic group corresponding to the Rhytismatales in the Maximum Parsimony analysis. The delimitation of the Rhytismatales from the Helotiales is, however, difficult. Cyclaneusma minus should be transferred from the Rhytismatales to the Helotiales, and Cudonia circinans and Spathularia flavida from the Helotiales to the Rhytismatales. These tranfers have previously been proposed based on SSU rDNA analysis by other authors. New Genus 1 sp. has morphological characteristics typical for species of Rhytismatales. In the LSU rDNA analysis, however, it is more closely related to Helotiales rather than toRhytismatales. Therefore New Genus 1 sp. is placed in the Helotiales.
Tryblidiopsis pinastri is morphologically intermediate between members of Rhytismataceae and Cudoniaceae. LSU rDNA sequences in the present study show that T. pinastri is more closely related to species of Cudoniaceae. Therefore, this species is removed from the Rhytismataceae to the Cudoniaceae. The delimitation of further families could not be resolved in the present analysis.
Though many new morphological, ecological, and molecular phylogenetic findings are contributed for the first time, the systematic conclusions at generic, family, and order level can only be fragmentary in the present study. With more collections and more molecular data of the worldwide 450 known and many more unknown species of Rhytismatales at hand, a natural system combining morphological and molecular analysis can be elaborated.
Cytochrome P450 (CYP) enzymes oxidize, peroxidize and/or reduce cholesterol, vitamins, steroids, xenobiotics and numerous pharmacological substances in an oxygen- and NADPHdependent manner. Since many CYP isozymes are also capable of metabolizing arachidonic acid to biologically active products, CYP enzymes are often described as the third pathway of arachidonic acid metabolism i.e., in addition to cyclooxygenases and lipoxygenases. CYP enzymes are predominantly expressed in the liver while others, such as members of the CYP 2J, CYP 2C and CYP 4A subfamilies, can be detected in extrahepatic tissues, particularly in the cardiovascular system. Recent data suggest that a CYP 2C enzyme(s) expressed in coronary artery endothelial cells generate epoxyeicosatrienoic acids (5,6-; 8,9-; 11,12- and 14,15-EET) which contribute to the acute control of vascular tone and the longterm regulation of vascular homeostasis.
The expression of CYP 2C in coronary artery endothelial cells is regulated by a number of stimuli, such as cyclic stretch and fluid shear stress as well as by the corticosteroid cortisol and a number of CYP substrates (nifedipine, cerivastatin and -naphthoflavone). However, the signalling pathways and the transcription factors involved in regulating the expression of the gene are unknown.
Since most of the CYP 2C enzymes are transcriptionally regulated, we were interested in identifying the CYP 2C isoform(s) expressed in porcine coronary artery endothelial cells (PCAEC) as well as determining its/their promoter sequence(s). The overall goal was to study the involvement of different transcription factor binding elements in the regulation of the CYP 2C gene(s). Porcine coronary arteries were used given the possibility of analysing the results obtained at the cellular level with alterations in vascular function. Comparison of the porcine CYP 2C and the human CYP 2C8 and 2C9 promoters was also a major goal of this study.
To identify the relevant porcine CYP 2C isoform nested RT-PCR was performed using total RNA from porcine coronary artery endothelial cells. Comparison of the sequence of the product of this reaction with the NCBI database suggested that the CYP 2C expressed in PCAEC was approximately 85% homologous with the human CYP 2C9 enzyme. To obtain the full length CYP 2C isoform 5´ rapid amplification of cDNA end (5´ RACE) was performed using a downstream reverse gene specific primer which is conserved in all of the porcine CYP 2C isoforms. The intention behind using such a primer was to amplify all the possible CYP cDNAs expressed in PCAEC. With the 5´ RACE technology it was possible not only to identify the exact isoform (CYP 2C34) expressed in PCAEC, but it was also possible to amplify 550 bp of the 5´ upstream region. This result was authenticated by comparing the protein/nucleotide sequence with other human CYP 2C genes such as CYP 2C8 and CYP 2C9 as well as different porcine CYP 2C genes (CYP 2C34, CYP 2C49). Multiple protein/nucleotide sequence alignment revealed approximately 85-90% sequence identity. An exon1-2 specific radio-labelled probe of the CYP 2C34 gene was then used to screen a porcine genomic library for positive genomic clones containing the promoter region of the CYP 2C34 gene.
For the isolation of 5´ flanking region of CYP 2C34 gene a PCR-based directional genome walking strategy was used in which the positive porcine genomic BAC clones were taken as a DNA template. Four arbitrarily designed universal walking primers and a gene-specific primer derived from the CYP 2C34 gene sequence were employed and led to the identification and isolation of 1.4 kb of the 5´ flanking region.
The 1.4 kb 5´ flanking region of CYP 2C34 gene contains multiple transcription factor binding sites including glucocorticoid-responsive element (GRE), hypoxia-responsive element (HRE), CAAT-enhancer binding protein (C/EBP), stress responsive element (STRE) consensus sequences. CYP 2C34 promoter constructs were generated and reporter gene activity (luciferase) activity was compared with that of a promoterless vector (pGL3-Basic) at first in HEK cells and then in PCAEC. After using cortisol as a positive control to demonstrate that the promoter constructs generated were functional we determined the effects of physiologically relevant stimuli i.e., hypoxia and cyclic stretch. Additional experiments with zinc sulphate were performed in a preliminary analysis of the role of Zn2+ inducible transcription factors and might be cooperative heterodimerization formation with these transcription factor with C/EBP in the regulation of CYP 2C34 expression. With all these stimuli, reporter gene activity of CYP 2C34 promoter was significantly (3-8 fold) increased over values obtained in unstimulated cells.
Analysis of the regions that are essential for the induction of promoter activity in response to the different stimuli of interest have to be performed in combination with gel shift assays, siRNA experiments as well as site-directed mutagenesis experiments. Comparison of the regulation of the CYP 2C34 gene and correlation with changes in vascular function (in isolated porcine coronary arteries) should deliver information relevant to the regulation of the CYP 2C enzyme expressed in human coronary artery endothelial cells. The recent demonstration of a clinically relevant role for CYP 2C9 in coronary heart disease underlines the importance of such a study.
Determination of the structure of complex I of Yarrowia lipolytica by single particle analysis
(2004)
Komplex I enthält ein Flavinmononukleotid sowie mindestens acht Eisen- Schwefel Zentren als redoxaktive Cofaktoren. Da ein wesentlicher Teil des mitochondrialen Genoms für Untereinheiten von Komplex I codiert, betrifft eine Vielzahl von mitochondrialen Erkrankungen diesen Enzymkomplex.
Komplex I wurde bisher aus Mitochondrien, Chloroplasten und Bakterien isoliert. Die Minimalform von Komplex I wird in Bakterien gefunden, wo er aus 14 (bzw 13 im Falle einer Genfusion) Untereinheiten besteht und eine Masse von etwa 550 kDa aufweist. Generell werden sieben hydrophile und sieben hydrophobe Untereinheiten mit über 50 vorhergesagten Transmembranhelices gefunden. Im Komplex I aus Eukaryoten wurde eine grössere Anzahl zusätzlicher, akzessorischer Untereinheiten nachgewiesen. Hier werden die sieben hydrophoben Untereinheiten vom mitochondrialen Genom codiert, während alle anderen Untereinheiten kerncodiert sind und in das Mitochondrium importiert werden müssen.
Die obligat aerobe Hefe Yarrowia lipolytica wurde als Modellsystem zur Untersuchung von eukaryotischem Komplex I etabliert. Die bisher am besten untersuchte Hefe Saccharomyces cerevisiae enthält keinen Komplex I. Hier wird die Oxidation von NADH durch eine andere Klasse von sogenannten alternativen NADH Dehydrogenasen durchgeführt. Auch Y. lipolytica enthält ein solches alternatives Enzym, das allerdings mit seiner Substratbindungsstelle zur Aussenseite der inneren Mitochondrienmembran orientiert ist. Durch molekularbiologische Manipulation konnte eine interne Version dieses Enzymes exprimiert werden, wodurch es möglich ist, letale Defekte in Komplex I Deletionsmutanten zu kompensieren. Mittlerweile wurden alle Voraussetzungen geschaffen, um kerncodierte Untereinheiten von Komplex I aus Y. lipolytica gezielt genetisch zu verändern. Die Proteinreinigung wird durch die Verwendung einer auf einem His-tag basierenden Affinitätsreinigung erheblich erleichtert...
The transcriptional regulator RcsB controls the expression of a minimum of 20 different genes having diverse functionalities and biosynthetic operons in the family of Enterobacteriaceae. While in the heterodimeric complex with the co activator RcsA, the RcsAB box consensus is recognized, DNA binding sites for RcsB without RcsA have also been identified. The conformation of RcsB might therefore be modulated upon interaction with various co activators, resulting in recognition of different DNA targets. In this study the interaction of RcsB with some of these DNA targets have been analysed by a diverse array of techniques including gel shift assay and SPR. The solution structure of the C-terminal DNA-binding domain of RcsB from Erwinia amylovora spanning amino acid residues 129-215 has been solved in this study by heteronuclear NMR spectroscopy. The C-terminal domain is composed of four α-helices where the two central helices of the H-T-H motif are similar to the structures of the regulatory proteins GerE, NarL and TraR. The DNA-binding activity of the C-terminal domain alone is established for the first time in this study and was specified by fluorescence spectroscopy, SPR and NMR titration experiments. The molecular interaction between the individual RcsB domains was analysed by cross-linking experiments and heteronuclear NMR spectroscopy and the amino acid residues of the C-terminal domain involved in this interaction were identified precisely. Another important part of this project was the cell-free production of different Trp analogue labelled RcsB protein. RcsB protein was produced in quite a good yield with different Trp analogue having spectrally enhanced properties. The isolated RcsB alloproteins proved to be ideal for protein interaction studies by fluorescence spectroscopy and the very first evidence of an oligomerization of RcsB due to molecular association has been put forth from these studies. The phosphorylated state of the RcsB protein was mimicked by a beryllofluoride complex in order to study its role in transcriptional regulation. It was found that RcsB alone could bind to DNA targets upon this modification by the beryllofluoride complex. Thus the phosphorylation of the protein that involves the Asp 56 residue induces a structural change of the protein followed probably by a domain movement also, so that the C-terminal domain having the H-T-H DNA binding motif that was previously eclipsed by the N-terminal domain is relieved of this constraint.
Taphonomy and palaeoecology of Laetoli as well as Makuyuni, Arusha region in northern Tanzania
(2004)
This thesis is the result of the Hominid Corridor research Project in Tanzania since 1993 to 1995 that include Pliocene and Pleistocene localities. The localities under study include Laetoli and Manyara area in Arusha Region, northern Tanzania. The thesis has the following specific objectives: firstly, to identify taxa recovered from the studied assemblages; secondly, to underpin taphonomic history of the assemblages under study; thirdly, to elucidate further palaeoecological reconstruction of the assemblages; and finally, to examine surface fossil fauna modifications including agents of modifications either hominids or carnivores.
The Upper Laetolil Beds are dated at 3.5 million years ago (Ma) and the Ndolanya Beds are bracketed in age between 3.5 and 2.41 Ma. The Naibadad Beds, also from Laetoli area, are date to be between 2.2 to 2.1 Ma. The Naibadad Beds are correlated with the base of Bed I at Olduvai Gorge. There are so far no absolute dates for Manyara assemblages. Based on biostratigraphic correlation, the younger overlying unit, the Upper Manyara Beds are estimated to belong to Later Pleistocene and the Lower Manyara Beds are estimated to belong to Early Pleistocene. The Upper Manyara Beds are correlated to the age of Bed III at Olduvai Gorge, while the Lower Manyara Beds are interpreted to span the same contemporaneity with the upper part of Bed II at Olduvai Gorge.
At Laetoli localities, terrestrial mammals while localities from Manyara besides terrestrial mammals dominate fauna; they include aquatic species such as fish, crocodiles and hippopotamus. The main families recovered from Upper Laetolil Beds complement those already recovered from former research works by other workers. This is also true for the younger overlying stratigraphic horizon, the Upper Ndolanya Beds. Thus, mammalian families recovered from Upper Laetolil Beds include Bovidae, Carnivora, Elephantidae, Equidae, Lagomorpha, Suidae, Rodentia, Hominoidea and Rhenocerotidae. Remains of an invertebrate, Gastropoda were also recovered. For Upper Ndolanya Beds include almost the same families recovered from Upper Laetolil Beds, but based on former recovery of fossil fauna, these Beds outnumber greatly the Upper Laetolil Beds in bovid composition by 20 per cent. Such a change in species composition is noticed also from South African localities and East African localities such as the East Turkana. This is interpreted to be due to climatic change drier environments that included species adapted to such palaeoclimates.
For the first time, our team has been able to retrieve specimens identifiable to taxa, a pattern that not possible from previous workers who claimed to have recovered too sparse specimens to be identifiable to any taxon.
The Upper Manyara Beds as well as Lower Manyara taxonomic composition include aquatic species besides the large terrestrial mammalian fauna retrieved from there. In due regard, the former horizon is attributed to have affinity with Olduvai Bed III components and the latter, older horizon, is attributed to have affinity with upper parts of Bed II times at Olduvai Gorge. The Lower Manyara Beds can be said to have, in relative terms, affinity to species recovered from site RC 11 of the Chiwondo Beds, Malema region in northern Malawi, although the former site may be equable to the terminal age of the latter locality.
Fossil hominid remains; attributable to genus Homo and possibly species Homo erectus have been recovered from two localities, Mk 2 and Mk, along Lower Manyara Beds. On the other hand, stone tools, identified to belong to the Acheulian industrial technocomplex, were recovered from site Mk 4.
All of fossil fauna from Laetoli sites were mostly exfoliated and there shows to be little effect in terms of hydrodynamic sorting of the fossil bones. However, intense carnivore activity is witnessed due to the almost one to one ratio of proximal to distal ends. This is also true for the Lower Manyara Beds locality. Through examination of surface modifications of the fossil fauna, it has been established that there was carnivore consumption of ungulates. There is no evidence of hominid involvement that has to be testified by stone tools.
Nitric oxide (NO) is a potent mediator with pleiotropic functions such as inhibition of platelet aggregation, smooth muscle relaxation and regulation of neuronal transmission. These effects are mostly mediated by intracellular NO-sensitive guanylyl cyclases (GCs) which convert GTP into the second messenger, cGMP. This messenger in turn activates multiple downstream effectors such as cGMP-dependent protein kinases, cGMP-regulated ion channels and cGMPdependent phosphodiesterases. Mammalian NO-sensitive GCs are obligate heterodimers of an α and β subunit each. Given that these enzymes play a key role in cGMP-mediated pathways, one may anticipate that mechanisms other than allosteric activation via NO may exist to regulate the production and turnover of cGMP. In this thesis, novel aspects of the regulation of the most abundantly expressed GC heterodimer α1β1 are presented.
A possible mechanism of regulation that was tested here, is tyrosine phosphorylation. Using anti-phosphotyrosine antibodies, the phosphorylation of the β1 subunit was detected after incubation of β1-overexpressing COS-1 cells with protein tyrosine phosphatase (PTP) inhibitors such as pervanadate and bpV(phen). β1 phosphorylation on tyrosines was also observed in PC-12 cells which endogenously express GC and in rat aorta after inhibition of PTPs. Furthermore, hydrogen peroxide was found to be a physiological stimulus for the induction of reversible β1 tyrosine phosphorylation in intact cells. Using phenylalanine mutants of different tyrosines, residue 192 (Y192) of β1 was identified as the major phosphorylation site. Consistent with this finding, sequence analyses showed that Y192 forms part of a motif that resembles a preferential target site for Src-like kinases. When tyrosine-phosphorylated, this motif exposes a typical SH2 docking site for members of the Src kinase family.
Experiments with inhibitors of Src kinases, PP1 and PP2, clearly showed that phosphorylation of Y192 is Src-dependent. Preincubation of β1-expressing cells with these inhibitors significantly reduced the level of phosphorylated β1 after bpV(phen) treatment. Furthermore, co-expression of β1 with Src led to a strong phosphorylation of this subunit. Co-precipitation experiments showed that Src interacts with GC. Interestingly, kinases of the Src family are recruited to β1 via the SH2 domain upon phosphorylation of Y192. Together, these results indicate that Src kinases phosphorylate tyrosine 192 thereby creating a docking site for their own SH2 domains. Kinase bound to GC may then catalyze phosphorylation of GC or other downstream effectors. Inhibition of PTPs altered GC activity in two ways: it increased both the basal activity and the YC-1- and BAY 41-2272-stimulated activity two-fold, and it reduced the sensitivity of the enzyme towards NO. The detailed mechanism of action is still unknown, but experiments using the mutant β1[Y192F] demonstrated that residue 192 is not responsible for these effects.
Another major focus of this thesis was the identification of novel GC binding proteins. Using the yeast two-hybrid approach, the carboxy-terminal portion of a protein named AGAP1 (amino acid (aa) 399-804) was found to interact with the catalytic domain of α1 (aa 466-690) and with the regulatory domain of β1 (aa 1-348). Human AGAP1 is a multidomain protein of 804 amino acids with a calculated molecular mass of 89,1 kDa comprising an Arf-GAP (GAP:GTPase activating protein), a putative GTPase domain, two Ankyrin repeats and a PHdomain. Co-precipitation experiments using lysates from mammalian cells overexpressing both binding partners confirmed the interaction of AGAP1 with the GC subunits. Immunofluorescence analyses demonstrated that AGAP1 co-localizes with GC in the cytoplasm of COS-1 cells.
In Northern blots, AGAP1 mRNA was detected in various human and murine tissues showing a comparable expression pattern described for the mRNA of α1 and β1. Using an AGAP1-specific antibody, endogenous protein was precipitated from lysates of HEK-293 cells derived from human embryonic kidney. The same antibody efficiently cross-reacted with the rat homologue (rAGAP1) and immunoprecipitated endogenous rAGAP1 from lysates of PC-12 cells, aorta and heart. The molecular mass of rAGAP1 is larger than that of the human protein, possibly due to an additional exon present in the rat genome. Like β1, AGAP1 is a substrate for tyrosine kinases. Phosphorylation of AGAP1 was detected after inhibition of PTPs or by coexpression of Src. Furthermore, the kinase inhibitor PP2 strongly impaired phosphorylation of AGAP1 after pervanadate treatment suggesting that tyrosine kinases of the Src family are involved. Measurements of cGMP production showed that AGAP1 has no influence on the activity of NO-sensitive GC. Interestingly, inhibition of PTPs potently increased the complex formation between AGAP1 and GC indicating that the interaction between these two proteins is modulated by reversible tyrosine phosphorylation. Whether this effect is due to the phosphorylation of AGAP1 or GC is still unknown. AGAP1 associates with endosomes and exposes Arf-GAP activity towards Arf1 and Arf5 which are involved in vesicular transport. Thus, one may hypothesize that binding of α1β1 to AGAP1 targets GC to distinct subcellular compartments in close proximity to cGMP-dependent effectors, thereby optimizing cGMP generation and fostering cGMP-driven actions.
Taken together, these results demonstrate that beside the modulation of GC by NO the enzyme is regulated by tyrosine phosphorylation and interaction with AGAP1.
The majority of bacterial membrane-bound NiFe-hydrogenases and formate dehydrogenases have homologous membrane-integral cytochrome b subunits. The prototypic NiFe-hydrogenase of Wolinella succinogenes (HydABC complex) catalyzes H2 oxidation by menaquinone during anaerobic respiration and contains a membrane-integral cytochrome b subunit (HydC) that carries the menaquinone reduction site. Using the crystal structure of the homologous FdnI subunit of Escherichia coli formate dehydrogenase-N as a model, the HydC protein was modified to examine residues thought to be involved in menaquinone binding. Variant HydABC complexes were produced in W. succinogenes, and several conserved HydC residues were identified that are essential for growth with H2 as electron donor and for quinone reduction by H2. Modification of HydC with a C-terminal Strep-tag II enabled one-step purification of the HydABC complex by Strep-Tactin affinity chromatography. The tagged HydC, separated from HydAB by isoelectric focusing, was shown to contain 1.9 mol of heme b/mol of HydC demonstrating that HydC ligates both heme b groups. The four histidine residues predicted as axial heme b ligands were individually replaced by alanine in Strep-tagged HydC. Replacement of either histidine ligand of the heme b group proximal to HydAB led to HydABC preparations that contained only one heme b group. This remaining heme b could be completely reduced by quinone supporting the view that the menaquinone reduction site is located near the distal heme b group. The results indicate that both heme b groups are involved in electron transport and that the architecture of the menaquinone reduction site near the cytoplasmic side of the membrane is similar to that proposed for E. coli FdnI.
In Archaea, bacteria, and eukarya, ATP provides metabolic energy for energy-dependent processes. It is synthesized by enzymes known as A-type or F-type ATP synthase, which are the smallest rotatory engines in nature (Yoshida, M., Muneyuki, E., and Hisabori, T. (2001) Nat. Rev. Mol. Cell. Biol. 2, 669-677; Imamura, H., Nakano, M., Noji, H., Muneyuki, E., Ohkuma, S., Yoshida, M., and Yokoyama, K. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 2312-2315). Here, we report the first projected structure of an intact A(1)A(0) ATP synthase from Methanococcus jannaschii as determined by electron microscopy and single particle analysis at a resolution of 1.8 nm. The enzyme with an overall length of 25.9 nm is organized in an A(1) headpiece (9.4 x 11.5 nm) and a membrane domain, A(0) (6.4 x 10.6 nm), which are linked by a central stalk with a length of approximately 8 nm. A part of the central stalk is surrounded by a horizontal-situated rodlike structure ("collar"), which interacts with a peripheral stalk extending from the A(0) domain up to the top of the A(1) portion, and a second structure connecting the collar structure with A(1). Superposition of the three-dimensional reconstruction and the solution structure of the A(1) complex from Methanosarcina mazei Gö1 have allowed the projections to be interpreted as the A(1) headpiece, a central and the peripheral stalk, and the integral A(0) domain. Finally, the structural organization of the A(1)A(0) complex is discussed in terms of the structural relationship to the related motors, F(1)F(0) ATP synthase and V(1)V(0) ATPases.
The signal transducer and activator of transcription (Stat) gene family comprises seven members with similarities in their domain structure and a common mode of activation. Members of this gene family mediate interferon induction of gene transcription and the response to a large number of growth factors and hormones. Extracellular ligand binding to transmembrane receptors causes the intracellular activation of associated tyrosine kinases, phosphorylation of Stat molecules, dimerization, and translocation to the nucleus. Prolactin-induced phosphorylation of Stat5 is a key event in the development and differentiation of mammary epithelial cells. In addition to the crucial phosphorylation at tyrosine 694, we have identified an O-linked N-acetylglucosamine (O-GlcNAc) as another secondary modification essential for the transcriptional induction by Stat5. This modification was only found on nuclear Stat5 after cytokine activation. Similar observations were made with Stat1, Stat3, and Stat6. Glycosylation of Stat5, however, does not seem to be a prerequisite for nuclear translocation. Mass spectrometric analysis revealed a glycosylated peptide in the N-terminal region of Stat5. Replacement of threonine 92 by an alanine residue (Stat5a-T92A) strongly reduced the prolactin induction of Stat5a glycosylation and abolished transactivation of a target gene promoter. Only the glycosylated form of Stat5 was able to bind the coactivator of transcription CBP, an essential interaction for Stat5-mediated gene transcription.
Respiratory chain complex I contains 8-9 iron-sulfur clusters. In several cases, the assignment of these clusters to subunits and binding motifs is still ambiguous. To test the proposed ligation of the tetranuclear iron-sulfur cluster N5 of respiratory chain complex I, we replaced the conserved histidine 129 in the 75-kDa subunit from Yarrowia lipolytica with alanine. In the mutant strain, reduced amounts of fully assembled but destabilized complex I could be detected. Deamino-NADH: ubiquinone oxidoreductase activity was abolished completely by the mutation. However, EPR spectroscopic analysis of mutant complex I exhibited an unchanged cluster N5 signal, excluding histidine 129 as a cluster N5 ligand.
Stable supercomplexes of bacterial respiratory chain complexes III (ubiquinol:cytochrome c oxidoreductase) and IV (cytochrome c oxidase) have been isolated as early as 1985 (Berry, E. A., and Trumpower, B. L. (1985) J. Biol. Chem. 260, 2458-2467). However, these assemblies did not comprise complex I (NADH:ubiquinone oxidoreductase). Using the mild detergent digitonin for solubilization of Paracoccus denitrificans membranes we could isolate NADH oxidase, assembled from complexes I, III, and IV in a 1:4:4 stoichiometry. This is the first chromatographic isolation of a complete “respirasome.” Inactivation of the gene for tightly bound cytochrome c552 did not prevent formation of this supercomplex, indicating that this electron carrier protein is not essential for structurally linking complexes III and IV. Complex I activity was also found in the membranes of mutant strains lacking complexes III or IV. However, no assembled complex I but only dissociated subunits were observed following the same protocols used for electrophoretic separation or chromatographic isolation of the supercomplex from the wild-type strain. This indicates that the P. denitrificans complex I is stabilized by assembly into the NADH oxidase supercomplex. In addition to substrate channeling, structural stabilization of a membrane protein complex thus appears as one of the major functions of respiratory chain supercomplexes.
Arsenic trioxide is a toxic metalloid and carcinogen that is also used as an anticancer drug, and for this reason it is important to identify the routes of arsenite uptake by cells. In this study the ability of hexose transporters to facilitate arsenic trioxide uptake in Saccharomyces cerevisiae was examined. In the absence of glucose, strains with disruption of the arsenite efflux gene ACR3 accumulated high levels of (73)As(OH)(3). The addition of glucose inhibited uptake by approximately 80%. Disruption of FPS1, the aquaglyceroporin gene, reduced glucose-independent uptake by only about 25%, and the residual uptake was nearly completely inhibited by hexoses, including glucose, galactose, mannose, and fructose but not pentoses or disaccharides. A strain lacking FPS1, ACR3, and all genes for hexose permeases except for HXT3, HXT6, HXT7, and GAL2 exhibited hexose-inhibitable (73)As(OH)(3) uptake, whereas a strain lacking all 18 hexose transport-related genes (HXT1 to HXT17 and GAL2), FPS1 and ACR3, exhibited <10% of wild type (73)As(OH)(3) transport. When HXT1, HXT3, HXT4, HXT5, HXT7, or HXT9 was individually expressed in that strain, hexose-inhibitable (73)As(OH)(3) uptake was restored. In addition, the transport of [(14)C]glucose was inhibited by As(OH)(3). These results clearly demonstrate that hexose permeases catalyze the majority of the transport of the trivalent metalloid arsenic trioxide.
Structural and functional characterization of the dimerization region of soluble guanylyl cyclase
(2004)
Soluble guanylyl cyclase (sGC) is a ubiquitous enzyme that functions as a receptor for nitric oxide. Despite the obligate heterodimeric nature of sGC, the sequence segments mediating subunit association have remained elusive. Our initial screening for relevant interaction site(s) in the most common sGC isoenzyme, α1 β1, identified two regions in each subunit, i.e. the regulatory domains and the central regions, contributing to heterodimer formation. To map the relevant segments in the β1 subunit precisely, we constructed multiple N- and C-terminal deletion variants and cotransfected them with full-length α1 in COS cells. Immunoprecipitation revealed that a sequence segment spanning positions 204–408 mediates binding of β1 to α1 The same region of β1[204–408] was found to promote β /β1 homodimerization. Fusion of [204 β1–408] to enhanced green fluorescent protein conferred binding activity to the recipient protein. Coexpression of β1[204–408] with α1 or β1 targeted the sGC subunits for proteasomal degradation, suggesting that β1[204–408] forms structurally deficient complexes with α1 and β1. Analysis of deletion constructs lacking portions of the β1 dimerization region identified two distinct segments contributing to α1 binding, i.e. an N-terminal site covering positions 204–244 and a C-terminal site at 379–408. Both sites are crucial for sGC function because deletion of either site rendered sGC dimerization-deficient and thus functionally inactive. We conclude that the dimerization region of β1 extends over 205 residues of its regulatory and central domains and that two discontinuous sites of 41 and 30 residues, respectively, facilitate binding of β1 to the α1 subunit of sGC.
Nitric oxide (NO)-sensitive soluble guanylyl cyclase (sGC) is the major cytosolic receptor for NO, catalyzing the conversion of GTP to cGMP. In a search for proteins specifically interacting with human sGC, we have identified the multidomain protein AGAP1, the prototype of an ArfGAP protein with a GTPase-like domain, Ankyrin repeats, and a pleckstrin homology domain. AGAP1 binds through its carboxyl terminal portion to both the α1 and β1 subunits of sGC. We demonstrate that AGAP1 mRNA and protein are co-expressed with sGC in human, murine, and rat cells and tissues and that the two proteins interact in vitro and in vivo. We also show that AGAP1 is prone to tyrosine phosphorylation by Src-like kinases and that tyrosine phosphorylation potently increases the interaction between AGAP1 and sGC, indicating that complex formation is modulated by reversible phosphorylation. Our findings may hint to a potential role of AGAP1 in integrating signals from Arf, NO/cGMP, and tyrosine kinase signaling pathways.
Nitric oxide (NO) represents a short lived mediator that pivotally drives keratinocyte movements during cutaneous wound healing. In this study, we have identified p68 DEAD box RNA helicase (p68) from an NO-induced differential keratinocyte cDNA library. Subsequently, we have analyzed regulation of p68 by wound-associated mediators in human and murine keratinocytes. NO, serum, growth factors, and pro-inflammatory cytokines were potent inducers of p68 expression in the cells. p68 was constitutively expressed in the epithelial compartment of murine skin. Upon injury, we found a transient down-regulation of overall p68 protein in wound tissue. However, p68 did not completely disappear during early wound repair, as we found an expression of p68 protein in isolated wound margin tissue 24 h after wounding. Moreover, immunohistochemistry and cell fractionation analysis revealed a restricted localization of p68 in keratinocyte nuclei of the developing epithelium. Accordingly, cultured keratinocytes also showed a nuclear localization of the helicase. Moreover, confocal microscopy revealed a strong localization of p68 protein within the nucleoli of the cells. Functional analyses demonstrated that p68 strongly participated in keratinocyte proliferation and gene expression. Keratinocytes that constitutively overexpressed p68 protein were characterized by a marked increase in serum-induced proliferation and vascular endothelial growth factor expression, whereas down-regulation of endogenous p68 using small interfering RNA markedly attenuated serum-induced proliferation and vascular endothelial growth factor expression. Altogether, our results suggest a tightly controlled expression and nucleolar localization of p68 in keratinocytes in vitro and during skin repair in vivo that functionally contributes to keratinocyte proliferation and gene expression.
The MAM (meprin/A5-protein/PTPmu) domain is present in numerous proteins with diverse functions. PTPμ belongs to the MAM-containing subclass of protein-tyrosine phosphatases (PTP) able to promote cell-to-cell adhesion. Here we provide experimental evidence that the MAM domain is a homophilic binding site of PTPμ. We demonstrate that the MAM domain forms oligomers in solution and binds to the PTPμ ectodomain at the cell surface. The presence of two disulfide bridges in the MAM molecule was evidenced and their integrity was found to be essential for MAM homophilic interaction. Our data also indicate that PTPμ ectodomain forms oligomers and mediates the cellular adhesion, even in the absence of MAM domain homophilic binding. Reciprocally, MAM is able to interact homophilically in the absence of ectodomain trans binding. The MAM domain therefore contains independent cis and trans interaction sites and we predict that its main role is to promote lateral dimerization of PTPμ at the cell surface. This finding contributes to the understanding of the signal transduction mechanism in MAM-containing PTPs.
Supersilylated tetrachlorodigermane (tBu3Si)Cl2GeGeCl2(SitBu3) and trigermoxetane (tBu3Si)3Ge3Cl3O
(2004)
In contrast to the tetrachlorodigermane (tBu3Si)Cl2Ge-GeCl2(SitBu3), the cis,transcyclotrigermane (tBu3SiGeCl)3 is sensitive to oxygen. Its treatment with O2 at ambient temperature leads to the trigermoxetane (tBu3Si)3Ge3Cl3O. According to an X-ray structure analysis of single crystals consisting of cocrystallized (tBu3Si)3Ge3Cl3O and (tBu3Si)Cl2Ge-GeCl2(SitBu3) the trigermaoxetane contains an almost planar Ge3O-ring while the tetrachlorodigermane (tBu3Si)Cl2Ge- GeCl2(SitBu3) possesses a Si-Ge-Ge-Si chain which is exactly all trans,
The major light-harvesting complex (LHC-II) of higher plants plays a crucial role in capturing light energy for photosynthesis and in regulating the flow of energy within the photosynthetic apparatus. Native LHC-II isolated from plant tissue consists of three isoforms, Lhcb1, Lhcb2, and Lhcb3, which form homo- and heterotrimers. All three isoforms are highly conserved among different species, suggesting distinct functional roles. We produced the three LHC-II isoforms by heterologous expression of the polypeptide in Escherichia coli and in vitro refolding with purified pigments. Although Lhcb1 and Lhcb2 are very similar in polypeptide sequence and pigment content, Lhcb3 is clearly different because it lacks an N-terminal phosphorylation site and has a higher chlorophyll a/b ratio, suggesting the absence of one chlorophyll b. Low temperature absorption and fluorescence emission spectra of the pure isoforms revealed small but significant differences in pigment organization. The oligomeric state of the pure isoforms and of their permutations was investigated by native gel electrophoresis, sucrose density gradient centrifugation, and SDS-PAGE. Lhcb1 and Lhcb2 formed trimeric complexes by themselves and with one another, but Lhcb3 was able to do so only in combination with one or both of the other isoforms. We conclude that the main role of Lhcb1 and Lhcb2 is in the adaptation of photosynthesis to different light regimes. The most likely role of Lhcb3 is as an intermediary in light energy transfer from the main Lhcb1/Lhcb2 antenna to the photosystem II core.
The transporter associated with antigen processing (TAP1/2) translocates cytosolic peptides of proteasomal degradation into the endoplasmic reticulum (ER) lumen. A peptide-loading complex of tapasin, major histocompatibility complex class I, and several auxiliary factors is assembled at the transporter to optimize antigen display to cytotoxic T-lymphocytes at the cell surface. The heterodimeric TAP complex has unique N-terminal domains in addition to a 6 + 6-transmembrane segment core common to most ABC transporters. Here we provide direct evidence that this core TAP complex is sufficient for (i) ER targeting, (ii) heterodimeric assembly within the ER membrane, (iii) peptide binding, (iv) peptide transport, and (v) specific inhibition by the herpes simplex virus protein ICP47 and the human cytomegalovirus protein US6. We show for the first time that the translocation pore of the transporter is composed of the predicted TM-(5-10) of TAP1 and TM-(4-9) of TAP2. Moreover, we demonstrate that the N-terminal domains of TAP1 and TAP2 are essential for recruitment of tapasin, consequently mediating assembly of the macromolecular peptide-loading complex.
The purification and functional reconstitution of a five-component oligopeptide ATP-binding cassette transporter with a remarkably wide substrate specificity are described. High-affinity peptide uptake was dependent on liganded substrate-binding protein OppA, which interacts with the translocator OppBCDF with higher affinity than unliganded OppA. Transport screening with combinatorial peptide libraries revealed that (i) the Opp transporter is not selective with respect to amino acid side chains of the transported peptides; (ii) any peptide that can bind to OppA is transported via Opp, including very long peptides up to 35 residues long; and (iii) the binding specificity of OppA largely determines the overall transport selectivity.
The mode of the antitumoral activity of multimutated oncolytic herpes simplex virus type 1 G207 has not been fully elucidated yet. Because the antitumoral activity of many drugs involves the inhibition of tumor blood vessel formation, we determined if G207 had an influence on angiogenesis. Monolayers of human umbilical vein endothelial cells and human dermal microvascular endothelial cells, but not human dermal fibroblasts, bronchial epithelial cells, and retinal glial cells, were highly sensitive to the replicative and cytotoxic effects of G207. Moreover, G207 infection caused the destruction of endothelial cell tubes in vitro. In the in vivo Matrigel plug assay in mice, G207 suppressed the formation of perfused vessels. Intratumoral treatment of established human rhabdomyosarcoma xenografts with G207 led to the destruction of tumor vessels and tumor regression. Ultrastructural investigations revealed the presence of viral particles in both tumor and endothelial cells of G207-treated xenografts, but not in adjacent normal tissues. These findings show that G207 may suppress tumor growth, in part, due to inhibition of angiogenesis.
We study issues of duality in 3D field theory models over a canonical noncommutative spacetime and obtain the noncommutative extension of the self-dual model induced by the Seiberg–Witten map. We apply the dual projection technique to uncover some properties of the noncommutative Maxwell–Chern–Simons theory up to first-order in the noncommutative parameter. A duality between this theory and a model similar to the ordinary self-dual model is established. The correspondence of the basic fields is obtained and the equivalence of algebras and equations of motion are directly verified. We also comment on previous results in this subject.
We perform a study of the possible existence of hybrid stars with color superconducting quark cores using a specific hadronic model in a combination with an NJL-type quark model. It is shown that the constituent mass of the non-strange quarks in vacuum is a very important parameter that controls the beginning of the hadron–quark phase transition. At relatively small values of the mass, the first quark phase that appears is the two-flavor color superconducting (2SC) phase which, at larger densities, is replaced by the color-flavor locked (CFL) phase. At large values of the mass, on the other hand, the phase transition goes from the hadronic phase directly into the CFL phase avoiding the 2SC phase. It appears, however, that the only stable hybrid stars obtained are those with the 2SC quark cores.
The production of strange pentaquark states (e.g., Theta baryons and Ξ−− states) in hadronic interactions within a Gribov–Regge approach is explored. In this approach the Θ+(1540) and the Ξ are produced by disintegration of remnants formed by the exchange of pomerons between the two protons. We predict the rapidity and transverse momentum distributions as well as the 4π multiplicity of the Θ+, Ξ−−, Ξ−, Ξ0 and Ξ+ for s=17 GeV (SPS) and 200 GeV (RHIC). For both energies more than 10−3 Θ+ and more than 10−5 Ξ per pp event should be observed by the present experiments.
The ubiquitin (Ub) ligase Cbl plays a critical role in attenuation of receptor tyrosine kinase (RTK) signaling by inducing ubiquitination of RTKs and promoting their sorting for endosomal degradation. Herein, we describe the identification of two novel Cbl-interacting proteins, p70 and Clip4 (recently assigned the names Sts-1 and Sts-2, respectively), that inhibit endocytosis of epidermal growth factor receptor (EGFR) and platelet-derived growth factor receptor. Sts-1 and Sts-2 contain SH3 domains that interacted with Cbl, Ub-associated domains, which bound directly to mono-Ub or to the EGFR/Ub chimera as well as phosphoglycerate mutase domains that mediated oligomerization of Sts-1/2. Ligand-induced recruitment of Sts-1/Sts-2 into activated EGFR complexes led to inhibition of receptor internalization, reduction in the number of EGFR-containing endocytic vesicles, and subsequent block of receptor degradation followed by prolonged activation of mitogenic signaling pathways. On the other hand, interference with Sts-1/Sts-2 functions diminished ligand-induced receptor degradation, cell proliferation, and oncogenic transformation in cultured fibroblasts. We suggest that Sts-1 and Sts-2 represent a novel class of Ub-binding proteins that regulate RTK endocytosis and control growth factor-induced cellular functions.
Alix/AIP1 is an adaptor protein involved in regulating the function of receptor and cytoskeleton-associated tyrosine kinases. Here, we investigated its interaction with and regulation by Src. Tyr319 of Alix bound the isolated Src homology-2 (SH2) domain and was necessary for interaction with intact Src. A proline-rich region in the C terminus of Alix bound the Src SH3 domain, but this interaction was dependent on the release of the Src SH2 domain from its Src internal ligand either by interaction with Alix Tyr319 or by mutation of Src Tyr527. Src phosphorylated Alix at a C-terminal region rich in tyrosines, an activity that was stimulated by the presence of the Alix binding partner SETA/CIN85. Phosphorylation of Alix by Src caused it to translocate from the membrane and cytoskeleton to the cytoplasm and reduced its interaction with binding partners SETA/CIN85, epidermal growth factor receptor, and Pyk2. As a consequence of this, Src antagonized the negative regulation of receptor tyrosine kinase internalization and cell adhesion by Alix. We propose a model whereby Src antagonizes the effects of Alix by phosphorylation of its C terminus, leading to the disruption of interactions with target proteins.
We propose a method to experimentally study the equation of state of strongly interacting matter created at the early stage of nucleus–nucleus collisions. The method exploits the relation between relative entropy and energy fluctuations and equation of state. As a measurable quantity, the ratio of properly filtered multiplicity to energy fluctuations is proposed. Within a statistical approach to the early stage of nucleus–nucleus collisions, the fluctuation ratio manifests a non-monotonic collision energy dependence with a maximum in the domain where the onset of deconfinement occurs.
Modifications of the gyromagnetic moment of electrons and muons due to a minimal length scale combined with a modified fundamental scale Mf are explored. First-order deviations from the theoretical SM value for g−2 due to these string theory-motivated effects are derived. Constraints for the fundamental scale Mf are given.
We suggest that the fluctuations of strange hadron multiplicity could be sensitive to the equation of state and microscopic structure of strongly interacting matter created at the early stage of high energy nucleus–nucleus collisions. They may serve as an important tool in the study of the deconfinement phase transition. We predict, within the statistical model of the early stage, that the ratio of properly filtered fluctuations of strange to non-strange hadron multiplicities should have a non-monotonic energy dependence with a minimum in the mixed phase region.
We point out that during the supernova II type explosion the thermodynamical conditions of stellar matter between the protoneutron star and the shock front correspond to the nuclear liquid–gas coexistence region, which can be investigated in nuclear multifragmentation reactions. We have demonstrated, that neutron-rich hot heavy nuclei can be produced in this region. The production of these nuclei may influence dynamics of the explosion and contribute to the synthesis of heavy elements.
Phosphorylation of the sarcoplasmic reticulum Ca(2+)-ATPase (SERCA1a) was studied with time-resolved Fourier transform infrared spectroscopy. ATP and ATP analogs (ITP, 2'- and 3'-dATP) were used to study the effect of the adenine ring and the ribose hydroxyl groups on ATPase phosphorylation. All modifications of ATP altered conformational changes and phosphorylation kinetics. The differences compared with ATP increased in the following order: 3'-dATP > ITP > 2'-dATP. Enzyme phosphorylation with ITP results in larger absorbance changes in the amide I region, indicating larger conformational changes of the Ca(2+)-ATPase. The respective absorbance changes obtained with 3'-dATP are significantly different from the others with different band positions and amplitudes in the amide I region, indicating different conformational changes of the protein backbone. ATPase phosphorylation with 3'-dATP is also much ( approximately 30 times) slower than with ATP. Our results indicate that modifications to functional groups of ATP (the ribose 2'- and 3'-OH and the amino group in the adenine ring) affect gamma-phosphate transfer to the phosphorylation site of the Ca(2+)-ATPase by changing the extent of conformational change and the phosphorylation rate. ADP binding to the ADP-sensitive phosphoenzyme (Ca(2)E1P) stabilizes the closed conformation of Ca(2)E1P.
We have studied the ubiquinone-reducing catalytic core of NADH:ubiquinone oxidoreductase (complex I) from Yarrowia lipolytica by a series of point mutations replacing conserved histidines and arginines in the 49-kDa subunit. Our results show that histidine 226 and arginine 141 probably do not ligate iron-sulfur cluster N2 but that exchanging these residues specifically influences the properties of this redox center. Histidines 91 and 95 were found to be essential for ubiquinone reductase activity of complex I. Mutations at the C-terminal arginine 466 affected ubiquinone affinity and inhibitor sensitivity but also destabilized complex I. These results provide further support for a high degree of structural conservation between the 49-kDa subunit of complex I and its ancestor, the large subunit of water-soluble [NiFe] hydrogenases. In several mutations of histidine 226, arginine 141, and arginine 466 the characteristic EPR signatures of iron-sulfur cluster N2 became undetectable, but specific, inhibitor-sensitive ubiquinone reductase activity was only moderately reduced. As we could not find spectroscopic indications for a modified cluster N2, we concluded that these complex I mutants were lacking most of this redox center but were still capable of catalyzing inhibitor-resistant ubiquinone reduction at near normal rates. We discuss that this at first surprising scenario may be explained by electron transfer theory; after removal of a single redox center in a chain, electron transfer rates are predicted to be still much faster than steady-state turnover of complex I. Our results question some of the central mechanistic functions that have been put forward for iron-sulfur cluster N2.
P-O bond destabilization accelerates phosphoenzyme hydrolysis of sarcoplasmic reticulum Ca2+-ATPase
(2004)
The phosphate group of the ADP-insensitive phosphoenzyme (E2-P) of sarcoplasmic reticulum Ca2+-ATPase (SERCA1a) was studied with infrared spectroscopy to understand the high hydrolysis rate of E2-P. By monitoring an autocatalyzed isotope exchange reaction, three stretching vibrations of the transiently bound phosphate group were selectively observed against a background of 50,000 protein vibrations. They were found at 1194, 1137, and 1115 cm–1. This information was evaluated using the bond valence model and empirical correlations. Compared with the model compound acetyl phosphate, structure and charge distribution of the E2-P aspartyl phosphate resemble somewhat the transition state in a dissociative phosphate transfer reaction; the aspartyl phosphate of E2-P has 0.02 Å shorter terminal P–O bonds and a 0.09 Å longer bridging P–O bond that is ∼20% weaker, the angle between the terminal P–O bonds is wider, and –0.2 formal charges are shifted from the phosphate group to the aspartyl moiety. The weaker bridging P–O bond of E2-P accounts for a 1011–1015-fold hydrolysis rate enhancement, implying that P–O bond destabilization facilitates phosphoenzyme hydrolysis. P–O bond destabilization is caused by a shift of noncovalent interactions from the phosphate oxygens to the aspartyl oxygens. We suggest that the relative positioning of Mg2+ and Lys684 between phosphate and aspartyl oxygens controls the hydrolysis rate of the ATPase phosphoenzymes and related phosphoproteins.
The transporter associated with antigen processing (TAP) is a key component of the cellular immune system. As a member of the ATP-binding cassette (ABC) superfamily, TAP hydrolyzes ATP to energize the transport of peptides from the cytosol into the lumen of the endoplasmic reticulum. TAP is composed of TAP1 and TAP2, each containing a transmembrane domain and a nucleotide-binding domain (NBD). Here we investigated the role of the ABC signature motif (C-loop) on the functional non-equivalence of the NBDs, which contain a canonical C-loop (LSGGQ) for TAP1 and a degenerate C-loop (LAAGQ) for TAP2. Mutation of the leucine or glycine (LSGGQ) in TAP1 fully abolished peptide transport. However, TAP complexes with equivalent mutations in TAP2 still showed residual peptide transport activity. To elucidate the origin of the asymmetry of the NBDs of TAP, we further examined TAP complexes with exchanged C-loops. Strikingly, the chimera with two canonical C-loops showed the highest transport rate whereas the chimera with two degenerate C-loops had the lowest transport rate, demonstrating that the ABC signature motifs control peptide transport efficiency. All single site mutants and chimeras showed similar activities in peptide or ATP binding, implying that these mutations affect the ATPase activity of TAP. In addition, these results prove that the serine of the C-loop is not essential for TAP function but rather coordinates, together with other residues of the C-loop, the ATP hydrolysis in both nucleotide-binding sites.
his Erratum replaces incorrect plots shown in Fig. 7 with the corrected ones. In the publication, the NA57 [1] ratios of Ξ− and Ξ¯¯¯¯+ to the number of wounded nucleons at ⟨NW⟩=349 by mistake were plotted at the wrong values. The ratios were calculated and plotted by mistake using ⟨NW⟩=249.
The correct normalization does not change the conclusions of the paper. The correctly normalized results are presented in Fig. 7.
IAD annual report 2004
(2004)
Pathologic data indicate that human cytomegalovirus (HCMV) infection might be associated with the pathogenesis of several human malignancies. However, no definitive evidence of a causal link between HCMV infection and cancer dissemination has been established to date. This study describes the modulation of the invasive behavior of NCAM-expressing tumor cell lines by HCMV. Neuroblastoma (NB) cells, persistently infected with the HCMV strain AD169 (UKF-NB-4AD169 and MHH-NB-11AD169), were added to endothelial cell monolayers and adhesion and penetration kinetics were measured. The 140- and 180-kDa isoforms of the adhesion receptor NCAM were evaluated by flow cytometry, Western blot, and reverse transcriptionpolymerase chain reaction (RT-PCR). The relevance of NCAM for tumor cell binding was proven by treating NB with NCAM antisense oligonucleotides or NCAM transfection. HCMV infection profoundly increased the number of adherent and penetrated NB, compared to controls. Surface expression of NCAM was significantly lower on UKF-NB-4AD169 and MHH-NB-11AD169, compared to mock-infected cells. Western-blot and RT-PCR demonstrated reduced protein and RNA levels of the 140- and 180-kDa isoform. An inverse correlation between NCAM expression and adhesion capacity of NB has been shown by antisense and transfection experiments. We conclude that HCMV infection leads to downregulation of NCAM receptors, which is associated with enhanced tumor cell invasiveness.
Part One addresses Theological Foundations. The five essays in this section deal with the Bible, Theology and Ecumenism. The subjects of theological methods, contextual hermeneutics, and appropriate curriculum are given special attention. Of course even foundational issues cannot be discussed in a vacuum and so each of the essays addresses these foundational subjects in the light of African realities. Part Two deals with Contemporary Issues. It is particularly in this section that the traditional themes in African theology have been somewhat displaced by concerns which are today very pressing indeed. Three essays are devoted to the question of HIV/AIDS. This disease, which has devastated the African continent, demands a theological and practical response from those who claim to follow Jesus Christ. If the churches do not respond to this crisis with energy and determination we should not be surprised if the next generation wonders whether the Gospel has the power which we claim that it has. Two essays address the question of Islam and Muslim-Christian Relations in Africa. The resurgence of Islam in the world today is a concern of many. For those who believe in Jesus, this is a challenge which demands much wisdom and love. How should we respond to our Muslim neighbours? What are appropriate and thoughtful ways to share the love of Christ? Two further essays appear under the title of The Marginalized. This could, of course, be a much large section. Those who suffer from AIDS could be included in this number, and one might have expected to see at least one essay on the place of women. In this volume, however, the disabled and youth are highlighted. Both groups are clearly in need of the attention of the churches, and both groups are clearly misunderstood and neglected. The final section of Part Two contains essays, which focus attention on Theological Paedagogy. All of the other contributions to this volume make suggestions and arguments about curriculum, resources, and issues of concern for theological educators. The causal aim of this book is that these essays may help us to reflect in an intentional way on the implications of contemporary realities for the future of theological education.
Criminology in Africa
(2004)
Criminology in Africa has been produced with contributions from leading African authors who have focussed on the various problems facing Africa today regarding crime and criminal justice, and they have, at the same time, put forward their ideas and suggestions for coming to terms with these massive problems.
The Caruso of Colleen Bawn and Other Short Writings is a collection of short stories and poems from the Zimbabwean author John Eppel. The pieces range from poetry evocative of the sights, sounds and smells of the Zimbabwean bush and suburbia to bitingly satirical prose about present day Zimbabwe. Eppel has proved himself in both fields of writing, being awarded the M-Net Prize for fiction and the Ingrid Jonker Prize for poetry.
THE FINANCIAL SERVICES INDUSTRY IS OPERATING IN HIGHLY VOLATILE MARKETS.
TO CONSIDER THE IMPACT OF UNCERTAIN MARKET ENVIRONMENTS ON INAND OUTSOURCING DECISIONS, WE INTRODUCE A REAL OPTIONS BASED DECISION SUPPORT MODEL. WE APPLY THE MODEL TO AN IT INFRASTRUCTURE OUTSOURCING DECISION AND DETERMINE - BASED ON COST SAVINGS RESULTING FROM OUTSOURCING AND OPTION VALUES ACCOUNTING FOR UNCERTAINTY - DIFFERENT “TRIGGER” OUTPUT VOLUMES WHICH INDICATE IF IN- OR OUTSOURCING IS PREFERABLE. FINALLY WE SHOW THAT THE MODEL CAN ALSO BE TRANSFERRED TO SOURCING DECISIONS OF TRANSACTION BASED BUSINESS PROCESSES LIKE CLEARING AND SETTLEMENT OF SECURITIES.
The starting point of Demirovic's text is Adorno's idea that concepts as forms of thinking are constellations of power. Differently from many interpretations of Adorno as resigned, Demirovic shows that this assumption enables Adorno to give his own theory the character of interventions in the ideological consensus of everyday life with regard to emancipation.
Hartmann and his Prague friends, whether German-Gentile or German-Jewish, rallied enthusiastically to the cause of what at first was a reawakening of suppressed Bohemic cultural nationalism and a move towards across-fertilisation of the two main lingual cultures (Czech/German) andthe three main ethnicities (Czech/German/Jewish) of the country. They soon saw themselves as a "Jungböhmische Bewegung" to correspond to Young Germany. The Prague writer Rudolf Glaser founded a literary journal called 'Ost und West' for the express purpose of bringing together German and Slavic literary impulses under the Goethean motto: "Orient und Occident sind nicht mehr zu trennen". With Bohemia as the bridge, 'Ost und West' published German translations from all the Slavic languages including Pushkin and Gogol, contributions by German writers sympathetic to the cause of emerging nations like Heinrich Laube, Ferdinand Freiligrath, Ernst Willkomm, but above all the Prague circle of Young Bohemians like Alfred Meissner, Isidor Heller, Uffo Horn, Gustav Karpeles and Ignatz Kuranda. Also Hartmann made his literary debut in the journal with a love poem entitled "Der Drahtbinder", and featuring a subtitle which was in keeping with the spirit of the times: "nach einem slavischen Lied".
The article presents a brief overview of research and publication in the history of international law in Europe today. The upsurge of interest in historical studies is traced back to a sense of present transformation, with historical studies seeking to explore both aspects of continuity and change in the international legal system. The article outlines three tasks for the discipline in the future: to begin work for international law’s Ideengeschichte, to focus on the relationship between the West and its "Other", and to undertake studies in the historical sociology of international law.
In 1875, the Liebig Extract of Meat Company began to distribute a series of pictures printed on small (11 x 7 cm), colorful, collectible cardboard cards along with its main product, Fleischextrakt. While not the first to adopt this advertising technique, Liebig quickly became the best-known purveyor of Sammelbilder. ...
Case numbers of endemic Ca-deficiency rickets (CDR) have been reported to be alarmingly rising among children of subsistence farms in developing countries within the last 30 years. Fluoride toxicities in the environment are known to not be related to the disease. To investigate if, instead, CDR is caused by a nutrient deficiency in the environment, subsistence farms in an endemic CDR area near Kaduna, northern Nigeria, were investigated for bedrock, slope forms, soil types, and soil characteristics. The natural environment was investigated according to the World Reference Base, soil texture was analysed by pipette and sieving, and plant-available macronutrients were determined using barium-chloride or Ca-acetate-lactate extraction. The analyses showed that granite and slope deposits were the dominant parent materials. The typical slope forms and soil types were Lixisols and Acrisols on pediments, Fluvisols in river valleys, and Plinthosols and Acrisols on plains. Compared with West African background values, all of the soils had normal soil textures but were low in macronutrients. Comparisons to critical limits, however, showed that only the P concentrations were critically low, which are typical for savanna soils. A link between nutrient deficiency in soils and CDR in the Kaduna area was therefore considered unlikely.
The adaptive response of Sorghum bicolor landraces from Egypt to drought stress and following recovery was analyzed using two-dimensional difference gel electrophoresis, 2D-DIGE. Physiological measurements and proteome alterations of accession number 11434, drought tolerant, and accession number 11431, drought sensitive, were compared to their relative control values after drought stress and following recovery. Differentially expressed proteins were analysed by Matrix assisted laser desorption ionisation time-of-flight mass spectrometry, MALDI-TOF-MS. Alterations in protein contents related to the energy balance, metabolism (sensu Mewes et al. 1997), and chaperons were the most apparent features to elucidate the differences between the drought tolerant and sensitive accessions. Further alterations in the levels of proteins related to transcription and protein synthesis are discussed.
Epigraphic documents attest that the two neighbouring, inland sites, Idalion and Tamassos, were kingdoms during the Cypro-Archaic period, and that-within an interval of nearly a century - they were both incorporated by the kingdom of Kition during the Cypro-Classical period, thereby losing their independent status. The geographical position of Idalion and Tamassos must have been both a blessing and a curse: while the two polities could thrive on the exploitation of the nearby copper mines, they also had to withstand the economic interest of other Cypriote polities in these natural resources. In addition, we may assume that, because of their inland position, Idalion and Tamassos were forced to seek economic collaboration with polities that had direct access to the sea for the export and exchange of commodities beyond the island. We may further expect that the control of ore-mining and forestry activities must have been a potential source of territorial strife between the two inland kingdoms. Therefore, the geo-economic reality likely induced Idalion and Tamassos to a dualistic relationship of being both allies and competitors. ...
The development of image-guided neurosurgery represents a substantial improvement in the microsurgical treatment of tumors, vascular malformations and other intracranial lesions. Despite the wide applicability and many fascinating aspects of image-guided navigation systems, a major drawback of this technology is they use images, mainly MRI pictures, acquired preoperatively, on which the planning of the operative procedure as well as its intraoperative performance is based. As dynamic changes of the intracranial contents regularly occur during the surgical procedure, the surgeon is faced with a continuously changing intraoperative field. Only intraoperatively acquired images will provide the neurosurgeon with the information he needs to perform real intraoperative image-guided surgery. A number of tools have been developed in recent years, like intraoperative ultrasound and dedicated moveable intraoperative CT units. Because of its excellent imaging qualities, combined with the avoidance of ionizing radiation, MRI currently is and definitely will be in the future for the superior imaging method for intraoperative image guidance. In this short overview, the development as well as some of the current and possible future applications of MRI-guided neurosurgery is outlined.
Intra-arterial (IA) chemotherapy for curative treatment of head and neck cancer experienced a revival in the last decade. Mainly, it was used in concurrent combination with radiation in organ-preserving settings. The modern method of transfemoral approach for catheterisation, superselective perfusion of the tumour-feeding vessel, and high-dose (150 mg m−2) administration of cisplatin with parallel systemic neutralisation with sodium thiosulphate (9 g m−2) made preoperative usage feasible. The present paper presents the results of a pilot study on a population of 52 patients with resectable stage 1–4 carcinomas of the oral cavity and the oropharynx, who were treated with one cycle of preoperative IA chemotherapy executed as mentioned above and radical surgery. There have been no interventional complications of IA chemotherapy, and acute side effects have been low. One tracheotomy had to be carried out due to swelling. The overall clinical local response has been 69%. There was no interference with surgery, which was carried out 3–4 weeks later. Pathological complete remission was assessed in 25%. The mean observation time was 3 years. A 3-year overall and disease-free survival was 82 and 69%, respectively, and at 5 years 77 and 59%, respectively. Survival results were compared to a treatment-dependent prognosis index for the same population. As a conclusion, it can be stated that IA high-dose chemotherapy with cisplatin and systemic neutralisation in a neoadjuvant setting should be considered a feasible, safe, and effective treatment modality for resectable oral and oropharyngeal cancer. The low toxicity of this local chemotherapy recommends usage especially in stage 1–2 patients. The potential of survival benefit as indicated by the comparison to the prognosis index should be controlled in a randomised study.
In eukaryotes, double-stranded (ds) RNA induces sequence-specific inhibition of gene expression referred to as RNA interference (RNAi). We exploited RNAi to define the role of HER2/neu in the neoplastic proliferation of human breast cancer cells. We transfected SK-BR-3, BT-474, MCF-7, and MDA-MB-468 breast cancer cells with short interfering RNA (siRNA) targeted against human HER2/neu and analyzed the specific inhibition of HER2/neu expression by Northern and Western blots. Transfection with HER2/neu-specific siRNA resulted in a sequence-specific decrease in HER2/neu mRNA and protein levels. Moreover, transfection with HER2/neu siRNA caused cell cycle arrest at G0/G1 in the breast cancer cell lines SKBR-3 and BT-474, consistent with a powerful RNA silencing effect. siRNA treatment resulted in an antiproliferative and apoptotic response in cells overexpressing HER2/neu, but had no influence in cells with almost no expression of HER2/neu proteins like MDA-MB-468 cells. These data indicate that HER2/neu function is essential for the proliferation of HER2/neuoverexpressing breast cancer cells. Our observations suggest that siRNA targeted against human HER2/neu may be valuable tools as anti proliferative agents that display activity against neoplastic cells at very low doses.
I shall take a look at a cluster of problems: the relation between fictional and actual worlds, between fictionality and narration, between action and rationality, between action and agent or subject, and between world, enunciation and subject in light of two important theoretical works, both from 1991. My choice of references is not entirely arbitrary: their basic approach shows certain similarities that underline the shortcomings of both in dealing with literature, in spite of the stimulating arguments they unfold. But they also show marked differences that allow us to develop their argument further. The books are Paisley Livingston's 'Literature and Rationality' and Marie-Laure Ryan's 'Possible Worlds, Artificial Intelligence, and Narrative Theory'.
A small electrostatic storage ring is the central machine of the Frankfurt Ion Storage Experiments (FIRE) which will be built at the new Stern-Gerlach Center of Frankfurt University. As a true multiuser, multipurpose facility with ion energies up to 50 keV, it will allow new methods to analyze complex many-particle systems from atoms to very large biomolecules. With envisaged storage times of some seconds and beam emittances in the order of a few mm mrad, measurements with up to 6 orders of magnitude better resolutions as compared to single-pass experiments become possible. In comparison to earlier designs, the ring lattice was modified in many details: Problems in earlier designs were related to, e.g., the detection of light particles and highly charged ions with different charge states. Therefore, the deflectors were redesigned completely, allowing a more flexible positioning of the diagnostics. Here, after an introduction to the concept of electrostatic machines, an overview of the planned FIRE is given and the ring lattice and elements are described in detail.
This article develops a Gricean account for the computation of scalar implicatures in cases where one scalar term is in the scope of another. It shows that a cross-product of two quantitative scales yields the appropriate scale for many such cases. One exception is cases involving disjunction. For these, I propose an analysis that makes use of a novel, partially ordered quantitative scale for disjunction and capitalizes on the idea that implicatures may have different epistemic status.
The interpretation of traces
(2004)
This paper argues that parts of the lexical content of an A-bar moved phrase must be interpreted in the base position of movement. The argument is based on a study of deletion of a phrase that contains the base position of movement. I show that deletion licensing is sensitive to the content of the moved phrase. In this way, I corroborate and extend conclusions based on Condition C reconstruction by N. Chomsky and D. Fox. My result provides semantic evidence for the existence of traces and gives semantic content to the A/A-bar distinction.
As the exilic experience, initiated in 587 B.C.E., continued over millennia, no one has been able to settle the question of what it means to be a diaspora Jew. Are those who actively participate in non-Jewish life still in a position to claim the heritage of Israel? And what about Jews who actively seek assimilation and renounce their roots altogether: are they still Jews in spite of themselves? Authors, from Joseph Roth to Sholom Aleichem to Chaim Potok, have tried to deal with this issue in light of different diaspora circumstances. One of the most recent perspectives on Jewish identity comes to us through "Sunshine", a powerful film by the Hungarian director Istvan Szabó (1999). Szabó, who wrote the screenplay with Israel Horowitz, tells the story of several generations in one Hungarian Jewish family: the Sonnenscheins. Living at the turn of the twentieth century, the patriarch of the Sonnenschein clan is Emmanuel, a successful distiller who seems to have found a balance between the two exilic extremes: neither complete assimilation, nor a retreat from gentile society.
After this issue you will have a new editor at the helm: Dr Volker Framenau. As you have been reading in the newsletters Volker has a background in both taxonomy and ecology. A network across both disciplines should help keep us well informed of the latest news and research within the region. Volker is very enthusiastic about the society and I encourage members to keep supporting the newsletter by sending him your articles. Volker has been helping me develop the webpage so that will continue to evolve.
The fires of January 2003 burnt much of the treeless high mountain country of Victoria, New South Wales and the Australian Capital Territory, and were the first extensive conflagration of this area since 1939. For this reason there are remarkably few studies of the response of alpine plants and vegetation to fire. A flora survey of treeless subalpine vegetation in the Kosciuszko area in late 2002 sampled 215 sites. Of the 119 sites that were burnt, 60 were relocated and re-sampled in late 2003 to assess the mode and extent of regeneration in a range of treeless plant communities. Twenty-four species (including 3 exotics) were recorded only in the pre-fire sampling. Fifty species (including 18 exotics) were recorded only in the post-fire sampling. One species, Chenopodium erosum, had not previously been recorded in Kosciuszko National Park, and is believed to be the first native chenopod recorded in alpine vegetation in Australia. There was no significant difference in mean number of species per quadrat between pre-fire and post-fire quadrats. The average number of weeds per quadrat was, however, significantly greater post-fire. Most of this difference was attributable to the significantly greater number of weeds per quadrat in bog vegetation after the fire. Of the 290 species recorded, 111 species regenerated from seed, 197 species regenerated from resprouting organs (roots, tubers and/or basal stems) and 49 species regenerated from both seed and resprouts. Based on the regeneration observed, most plant communities will return naturally to their pre-fire species composition and cover over a period between a few years and a few decades. Major exceptions will be those communities where the ‘keystone’ species appear to have been lost at least at a local scale. Principal amongst these are bog communities that incorporated significant biomass of Sphagnum cristatum pre-fire, Podocarpus lawrencei shrublands and Celmisia costiniana closed herbfields. Consideration might be given to augmenting their recovery. It will be important to exclude fire from these communities until their recovery is complete.
Floristic communities from the alluvial floodplains and near-alluvial plains of the lower Dawson River, mideastern Queensland, are described from near-intact sites. Three broad and ten detailed floristic groups were defined. Differences in community composition appeared related to soil type, localised disturbance and latitude. Weeds comprised a small proportion of the total flora, although they presently dominate some areas. Grasses were the main exotic species present, and appeared to have increased within the last forty years.
Bryophyte composition in a native grassland community subjected to different long-term fire regimes
(2004)
The vascular species composition of volcanic plains grassland remnants of western Victoria is strongly tied to management history, with frequently burned remnants often supporting the most diverse native flora relative to grazed and long-unburned remnants. How the fire regime affects the composition of the bryophytic mat, however, has not been documented. I surveyed the moss and liverwort flora of six Themeda triandra grasslands subjected to different long-term fire regimes to understand how fire might affect mat composition. A total of 27 non-vascular species (19 mosses and 8 liverworts) were recorded, of which nine species were recorded only from a single location. Non-vascular species contributed 28% of the total diversity observed in this study. The liverwort Lethocolea pansa was the most obvious species at all sites, while the mosses Rosulabryum billardieri and Fossombronia intestinalis were also found at all sites and hence, would appear to be robust to fire at different frequencies. Frequently-burned (1–2 yr interval) grasslands generally had lower mat species richness than longer-unburned sites (4 to >20 yr intervals) and appear to support a subset of the flora (due to the loss of moss species) rather than a distinctly different flora. The preliminary results of this study contrast with the evidence usually found for vascular species, i.e. that frequent fire favours greater native species richness. Hence, the two components of the flora would appear to respond in different ways to fire and this should be considered in the conservation planning for this grassland community. Further field sampling is warranted to confirm the initial trends identified by this study.
The vegetation of Basket Swamp National Park (2820 ha), 30 km north east of Tenterfield (28°54’S, 152°09’E) in the Tenterfield Shire, in the Northern Tablelands Bioregion NSW, is described. Seven vegetation communities are mapped based on survey of plots, subsequent ground-truthing, air photo interpretation and substrate.
Communities described are: (1) Eucalyptus campanulata (Blackbutt) – Eucalyptus cameronii (Diehard Stringybark) Open Forests, (2) Eucalyptus campanulata (Blackbutt) – Eucalyptus cameronii (Diehard Stringybark) Grassy Open Forests, (3) Leptospermum trinervium (Tea-tree) – Leptospermum polygalifolium subsp. transmontanum (Creek Tea-tree) Riparian Scrub, (4) Leptospermum trinervium (Tea-tree) – Kunzea obovata (Pink Kunzea) – Leptospermum novae-angliae (New England Tea-tree) Heaths & Shrublands, (5) Ceratopetalum apetalum (Coachwood) – Lophostemon confertus (Brush Box) Closed Forest, (6) Eucalyptus obliqua (Messmate) – Eucalyptus campanulata (Blackbutt) Tall Open Forests, and (7) Baeckea omissa (Baeckea) – Baloskion stenocoleum (Sedge) Heathy Sedgelands.
All but two communities (3 & 7) were considered adequately reserved locally, no listed endangered or vulnerable communities were found. Thirty-six taxa were considered to be of conservation significance of which two are listed as vulnerable on Schedule 2 of the NSW TSC Act.A further nine have been reported under the RoTAP criteria.
Pultenaea glabra Benth. is a recently revised taxon which includes disjunct populations in Victoria, NSW, and Queensland. Victorian populations were previously described as Pultenaea weindorferi Reader, and listed as rare in Victoria. Pultenaea glabra is known from four locations in Victoria; it is locally abundant at the Bunyip and Lerderderg-Wombat localities, is uncommon at Wandin, and is in serious decline at Kinglake. Viable soil-stored seeds were present at all sampled locations, and seed germination was enhanced by heat pre-treatments, though germination of untreated seeds also occurred. Few mature plants remain at Kinglake and the population structure differed markedly from the other sampled populations. It has been suggested that the species requires a specific fire regime for regeneration, but it is likely that the severe decline in the Kinglake population is the result of grazing, rather than an inappropriate fire regime. At this site, germination is occurring but plants have not reached maturity, and the species is represented by only seedlings. Managing the species at Kinglake will require consideration of multiple factors, and reintroducing fire to the site at this stage may jeopardize seedling survival and result in local extinction.
Twenty-one riparian vascular plant communities are defined, mapped and described using presence/absence data from 460 sites from relatively unmodified stretches of rivers and streams on mainland Tasmania. The process of classification involved selection of groups of floristically distinct sites from a sorted table produced by a polythetic divisive process. The communities have strong geographic patterns. Many communities have a wide range of structural expression and/or dominants. Nearly half of the native vascular flora of Tasmania is present in the sites, including a large number of conservation-significant species, some of which are concentrated in riparian vegetation. In the drier, lowland parts of the State there are large areas with little or no native riparian vegetation remaining. Several of the communities that occur in this environment appear to be totally unreserved, while most of the communities from colder and more humid areas are represented within secure reserves.
An improved approach to predicting preferred habitat and targetting survey effort for threatened plant species is needed to aid discovery and conservation of new populations. This study employs several approaches to aid in the delineation of preferred habitat for the Leafless Tongue Orchid, Cryptostylis hunteriana Nicholls. BIOCLIM, a bioclimatic analysis and prediction system, is used initially to generate a bioclimatic habitat envelope within which the species can be expected to occur, based on all known sites in the Shoalhaven Local Government Area. Within the BIOCLIM envelope it is possible to further investigate the extent to which the species exhibits preferences for other habitat factors such as geology, soil landscapes and forest ecosystems. Multivariate techniques are used to compare floristic data from sites where Cryptostylis hunteriana is present, and sites from forest ecosystems where it has not been recorded historically. These techniques are also used to identify species which are diagnostic of each of these sets of sites. All 25 sites with Cryptostylis hunteriana populations are restricted to six forest ecosystems having a total area of 15% of the Shoalhaven Local Government Area and 47% of the BIOCLIM envelope. Within these forest ecosystems, ten plant species deemed indicative of the possible presence of the Cryptostylis hunteriana are identified.
Semi-permanent quadrats, located in the South and Central Western Slopes botanical regions of New South Wales, were assessed to indicate suitable periods of the year to conduct surveys of botanical diversity. The quadrats were located in woodland communities with a generally herbaceous understorey, and subject to a wide range of domestic stock grazing intensities. In the mid to western South Western Slopes (SWS) the greatest number of species was generally recorded in an October survey. The main exception was in degraded areas (low species diversity, high proportion of annual weed species), where similar results were recorded in September and October. In the cooler and wetter eastern SWS a relatively high proportion of species were recorded in October to early December surveys. However, when compared to species totals compiled from multiple assessments in all seasons, or from August to November, a single optimal survey usually recorded only 60–75% of the plant species at a site. Surveys in mid to late summer, autumn and early winter usually recorded less than 50% of the plant species present. The results reflect the prevailing Mediterranean-type climate, and that the ground layer vegetation (primarily comprised of annuals and herbaceous perennials) dominates the species diversity.
Angophora inopina is a vulnerable tree species occurring principally in Wyong and Lake Macquarie local government areas on the Central Coast, with disjunct populations as far north as Bulahdelah on the North Coast of NSW. The largest and most intact stands occur within the Wyee-Morisset areas although even here significant fragmentation is evident. North of Toronto, there are small and scattered residual populations as far as Barnsley near West Wallsend in Lake Macquarie. A total area of occupied habitat of approximately 1500 ha is estimated.
Cluster analysis of floristic information showed that Angophora inopina occurs within three broad habitat types within the Central Coast bioregion, centred mainly on the Gorokan, Doyalson and Wyong soil landscapes. Hybrid forms of the species also occur on the Cockle Creek landscape in northern Lake Macquarie. Most stands are evident within open woodland/ forest vegetation where Eucalyptus haemastoma, Corymbia gummifera, and Eucalyptus capitellata dominate with Angophora inopina. Other populations occur in wet heath, and swamp woodland environments where sedge species are characteristic.
Conservation of Angophora inopina will be most effectively and efficiently achieved if ecological processes that operate across the landscape are maintained. Processes such as fragmentation, altered fire regimes or invasion of habitat by exotic species must be managed in the long-term. These are all significant threats to this species, and will best be effectively managed in the larger remnants in a landscape approach. Such threats are generally associated with urban and agricultural expansion in the area, and these are therefore the most pressing issues to be managed.
The flora of the Lord Howe Island Group (31°30’S, 159°05’E) comprises a unique mix of elements of Australian, New Zealand and New Caledonian floras. It is significant for its high degree of endemism and for its structural and biological (leaves, flowers, fruit) role in supporting a diverse array of fauna. Conservation of this flora is dependant upon: reducing current habitat degradation (mostly the result of exotic weeds); minimising any future impacts, in particular the effects of climate change on the unique cloud forests of the southern mountains and the continued introduction and spread of weeds and the pathogen Phytophthora cinnamomi.
We provide a description of the nature of the major threats to the flora and suggest an area-based scheme, focussed on the relative conservation significance of remaining vegetation, as a mechanism for developing priorities for threat mitigation activities. While a number of threat control works are in place, eg. weed control, some re-emphasis is needed. In addition, some new initiatives are required including: reducing the rate of introductions of new exotics; a system to remove potential environmental weeds from the settlement area; phytosanitary guidelines; pathogen quarantine measures; search and removal of environmental weeds from remote areas; and ex situ initiatives for plant species restricted to the cloud forests of the southern mountains.
A checklist of the mosses (Bryophyta) of the Wet Tropics bioregion, north-east Queensland is presented. Included is an update on the taxonomy of species, listing a total of 408 taxa. The habitat and distribution patterns of species within the area and in Australia, together with information on the phytogeographical affinities of these taxa in related areas beyond Australia, are discussed.
Floristic patterns along an east–west gradient in grassy box woodlands of Central New South Wales
(2004)
Temperate grassy box woodlands are the predominant native vegetation of the "wheat-sheep" belt of south-eastern Australia. In New South Wales, a number of different eucalypt species form the overstorey of these woodlands, with changes in dominance from Eucalyptus melliodora (Yellow Box) and Eucalyptus albens (White Box) in the east to Eucalyptus microcarpa (Grey Box) and Eucalyptus populnea (Poplar Box) in the west. Most grassy Box woodlands have now been cleared or modified for agriculture, and their conservation is dependent on adequate knowledge of the distribution, ecology and management needs of remaining woodlands. In this study we describe the understorey flora of high quality remnants of grassy Box woodlands along an east-west gradient in central New South Wales, comparing sites with a history of minimal livestock grazing (cemeteries) with sites with a history of intermittent livestock grazing (travelling stock reserves). With some important exceptions relating to Eucalyptus melliodora, dominant overstorey eucalypts were good indicators of understorey changes along the east-west gradient. A particular disjunction, involving changes in the dominant grasses from Themeda australis and Poa sieberiana to Austrostipa scabra, Austrodanthonia and Enteropogon species, distinguishes "eastern" (Eucalyptus melliodora, Eucalyptus albens) from "western" (Eucalyptus microcarpa, Eucalyptus populnea) Box woodlands, and has significant implications for understorey management. Notable changes in subsidiary species included changes in the main genera of shrubs and daisies, and a number of trends at the family level. Families such as Dilleniaceae, Haloragaceae, Epacridaceae and Ranunculaceae were more frequent or diverse in eastern Box woodlands, and gave way to species of the families Malvaceae, Chenopodiaceae, Myoporaceae, Amaranthaceae and Brassicaceae in the west. Intermittent grazing influenced understorey composition in all box woodlands sampled, although influences in western Box woodlands were less pronounced. Effects of grazing included a decline in shrub abundance and loss of a range of native perennials across all woodlands, changes to the dominant grasses and a considerable increase in exotic annuals in the east, and a decline in native grass diversity and increase in native annuals in the west.
Subalpine shrubs on rocky slopes on the Bogong High Plains, Victoria (36° 53’ S, 147° 19’ E), were observed to be severely desiccated over the summer of 2002/03 after a 50 day period when only 1.2 mm of rainfall was recorded. Moderate to severe canopy dieback was noted in shrubs growing on rocky north- and west-facing slopes. Four shrubs were assessed for their drought tolerance on west-facing slopes at Basalt Hill. Soils were rocky and uniformly shallow across the site (mean depth = 11.32 ± 0.69 cm). Prostanthera cuneata was the most drought tolerant species (as evidenced by the least amount of canopy dieback observed) followed by Hovea montana, Pimelea axiflora var. alpina and Epacris glacialis. All Epacris glacialis plants (n = 16) had died at the study location whereas no Prostanthera cuneata plants (n = 45) had canopy dieback that exceeded 60%. The amount of dieback observed was not significantly associated with either local soil depth or shrub canopy area. Hence, very small plants were not more susceptible to drought nor were shrubs found on the shallowest of the soils at the site. This suggests that drought effects are possibly dependent on local influences such as topography, drainage and competition intensity. Drought has only rarely been considered a major factor affecting the abundance and distribution of subalpine shrub species in Australia but this study suggests that it should be added to the list of abiotic factors governing the local dynamics of subalpine vegetation. In particular, the high mortality of Epacris glacialis observed in the study area suggests that non-equilibrium dynamics are likely to be the "norm" for some shrubs in subalpine areas.
In fire-prone grassy woodlands, fire response and time to reach reproductive maturity are two traits that can be used to provide an indication of the minimum interval between fires needed to maintain biodiversity. This study examined the effects of fire intensity and adult size on shrub mortality together with the primary and secondary juvenile periods of shrub species in the New England Tableland (NET) Bioregion. Most shrub species resprouted via basal lignotubers following fire, irrespective of fire intensity and shrub size. The primary juvenile period of most species was found to be greater than four years and the secondary juvenile period for most resprouting species was less than four years. These results suggest that a minimal interval between fires of eight years may be needed to maintain shrub species in grassy woodlands in the NET Bioregion, and that repeated fires at intervals of less than 8 years should be avoided. The time taken for shrubs in the grassy woodlands of the NET Bioregion to reach reproductive maturity appears to be longer than conspecifics in other Bioregions. Caution is needed when using data collected from outside a Bioregion to determine minimum fire frequency thresholds.
Montagu Island (36°15’S; 150°14’E) is situated about 10 km east of Narooma on the New South Wales South Coast. The paper presents evidence about the changes in the terrestrial vegetation of the island since it was first seen by Europeans, provides a floristic inventory and gives a perspective on the effects of introduced species.
Flinders (1814) mentions that the island "produced small trees." This is the only record of what grew on the island until in 1880 annotations on a map, made at the time of the construction of the lighthouse, mentioned the presence of scrub, trees and rank grass. This is confirmed by photographic evidence, but by 1932, when the botanist F. A. Rodway visited the island, the trees had disappeared. In 1973, during a land use survey of the South Coast, a team of CSIRO described the vegetation as a distinct series of dune communities belonging to the Lomandra longifolia – Pteridium esculentum – Phragmites australis complex. Vegetation mapping in the late 1980s confirmed the prevalence of these species, except that Pennisetum clandestinum then covered a large area along the west side of the island.
Excluding taxa used for ornamental or culinary purposes, nearly 200 species of vascular plants have been recorded since 1932 of which about 140 were still present in the late 1990s. There are ten species of ferns e.g. Pteridium esculentum, widespread and sometimes codominant with Lomandra longifolia, and Asplenium obtusatum, frequently found among the rocks along the east side of the island. The only taxon unique to Montagu Island is a hybrid of this species and Asplenium australasicum. Among the flowering plants there are about 110 native species and about 70 species naturalised in Australia. About 85 and 40, respectively, are still present today. Many of these have a wide distribution in Australia and only about 25 have a more restricted coastal distribution. The species that have disappeared include many that were weeds in the vegetable gardens or around the chicken sheds. Several naturalised species still present are notorious for their capacity to overrun existing vegetation. Foremost among these is Pennisetum clandestinum, which now covers about one-third of the island; Acetosa sagittata is a close second. Other contenders are Dipogon lignosus and Delairea odorata. It is now apparent that these species were kept in check by the feral goats that roamed the island before it was declared a Nature Reserve in December 1987.
Downey (1998) collated an inventory of mistletoe host species based on herbaria records for every aerial mistletoe species (families Loranthaceae and Viscaceae) in Australia. In this paper the representative nature of those host lists is examined in an extensive field survey of mistletoes and their host species in south-eastern New South Wales (including Australian Capital Territory). Four new host species not in the 1998 inventory, and eight new mistletoe-host combinations (i.e. a previously recorded host but not for that particular mistletoe species) were collected. These new records were distributed throughout the survey area. Interestingly, these new host-mistletoe combinations were for mistletoe species that were well represented in the national inventory (i.e. with many herbarium collections and numerous host species). The initial inventory was incomplete, at least for south-eastern New South Wales, indicating the need for (i) more targeted surveys similar to this one, and/or (ii) regular updates of the host inventory based on voucher specimens. A possible reasons why information on host-mistletoe combinations is incomplete may be that such combinations may be dynamic (i.e. mistletoe species may be expanding their suite of potential hosts, either fortuitously or as result of evolutionary pressures).