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Im Rahmen dieser Arbeit wurde die schnelle Energietransfer- (EET) und Elektronentransfer (ET)-Dynamik unterschiedlichster Quantenpunkte (QD) spektroskopisch untersucht. Die untersuchten Systeme bestanden in den meisten Fällen aus Donor-Akzeptor-Paaren, bei denen die Halbleiternanokristalle als Donor fungierten. Der Fokus lag dabei auf der gezielten Anpassung des Donors, um die optimale Funktionalität zu erreichen. Die Untersuchung der Nanokristalle erstreckte sich daher von einfachen Kernen über verschiedene Kern-Schale-Partikel bis hin zu völlig anderen Strukturen wie Nanoplatelets (NPL). Als Akzeptor wurden eine Vielzahl von Molekülen verwendet, die sich als Elektronen- und/oder Energieakzeptoren für die verschiedenen QDs eignen.
Der Begriff der Kompetenz ist allgegenwärtig und wird fast schon inflationär eingesetzt, um beispielsweise Qualität und Wertigkeit einer Dienstleistung oder eines Produktes hervorzuheben, sowie häufig verwendet, um eine besondere Bedeutung und hohe Leistungsfähigkeit zu vermitteln.
Innerhalb des formalisierten schulischen, aber auch des beruflichen und des universitären Bildungssystems nimmt der Kompetenzbegriff, nachdem er aufgrund seiner Popularität den Begriff der Schlüsselqualifikation ablöste, eine zentrale Stellung ein. Kompetenzorientierter Unterricht soll nicht nur dafür sorgen, dass Deutschland im internationalen Vergleich schulischer Bildungsergebnisse besteht, sondern auch ermöglichen, dass Bildung und Ausbildung an gesellschaftlichen Erfordernissen und individuellen Voraussetzungen gleichermaßen ausgerichtet werden können.
In der Kunstpädagogik ist die Kompetenzorientierung nicht unstrittig. Zwischen dem Begrüßen als Möglichkeit des Anschlusses an internationale Bildungsstandards und der vehementen Ablehnung als Versuch der Ökonomisierung und Technokratisierung von Bildungsprozessen sind nur wenige Alternativen auszumachen, die eine fachspezifische Aneignung und Reformulierung des Begriffs beabsichtigen.
Die hier vorliegende Forschungsarbeit untersucht die Anwendung, Schulung und Erweiterung von Kompetenzen in einem bildnerischen Projekt in der Jugendhilfe, einem Teilbereich der Sozialen Arbeit. In außerschulischen Bildungskontexten wird der Begriff der Kompetenz bislang noch wenig rezipiert. Was nicht zuletzt daran liegt, dass Handlungsfelder außerhalb formalisierter Lernsettings lange nicht als einflussreiche Bildungsorte in den Blick genommen wurden. Erst langsam beginnt sich eine Forschung zu etablieren, die Bildung in Bezug auf die gesamte Lebenswelt versteht. Dabei werden Kompetenzen ähnlich wie im schulischen Bildungssystem oftmals auf vermittelbare Wissensbestände, Fertigkeiten oder methodische Vorgehensweisen bezogen und somit vor allem kognitiv und domänenspezifisch bestimmt. Ein weiter gefasstes Verständnis begreift Kompetenz jedoch als Fähigkeit, subjektiv erfolgreich mit der Umwelt zu interagieren, wobei diese Fähigkeit in der Interaktion ausgebildet und modifiziert wird. Mit diesem Verständnis lassen sich auch motivationale und volitionale Aspekte integrieren.
Kompetenz wird damit als eine sowohl sachliche als auch soziale und personale Bestandteile beinhaltende Befähigung zur Lebensbewältigung betrachtet, die auf eine weitestgehende Selbstbestimmung abzielt und ein auf die Zukunft gerichtetes Handeln ermöglicht. Kompetenz ist damit nicht nur als Folge oder Ergebnis von Bildungsprozessen anzusehen, die in der erwünschten Form und Ausprägung entwickelt werden sollen. Kompetenz kann vielmehr als eine dem Individuum eigene Befähigung angesehen werden, die in Bildungsprozessen subjektiv sinnhaft aktiviert, weiter ausgebildet und verändert wird. Damit geraten sowohl die subjektiven Sinnstrukturen als auch die soziokulturellen Kontexte, in denen Kompetenz als Bewältigungskönnen ausgebildet werden muss, stärker in den Blick.
Structure-function relationships in substrate binding protein dependent secondary transporters
(2023)
This work provides new insights into the relevance of SBP dependent secondary transport systems, especially in the thus far under-researched subgroup of TAXI transporters. Importantly, we identified and characterized the TAXI transport system TAXIPm-PQM from Proteus mirabilis. We demonstrated that, in contrast to previously characterized SBP dependent secondary transport systems, TAXIPm-PQM is a proton coupled system and transports the C5-dicarboxylate α- ketoglutarate. Since initially the transport of α-ketoglutarate could only be demonstrated in vivo but not in vitro using established protocols (Mulligan et al. 2009), we investigated in detail the differences between the in vivo and in vitro assay. This resulted in a bioinformatic analysis of TRAP and TAXI signal peptides, which strongly implied that TAXIPm-P requires a transmembrane anchor to allow for transport. We then provided TAXIPm-P surface tethered to the membrane in in vitro transport assays and confirmed the prediction of our bioinformatic analysis that TAXIPm-PQM deploys a membrane-anchored instead of a soluble SBP. Furthermore, the TAXI transport system TAXIMh-PQM from Marinobacter hydrocarbonoclasticus transports fumarate only if both membrane domains Q and M are present. For further characterization, Michaelis-Menten kinetics and affinities were determined for both TAXI transport systems TAXIPm-PQM from Proteus mirabilis and TAXIMh-PQM from Marinobacter hydrocarbonoclasticus. In addition, nanobodies were selected for the membrane domain TAXIPm-QM from Proteus mirabilis to stabilize different conformations which can serve in subsequent structural elucidation studies. Furthermore, the TRAP SBP TRAPHi-SiaP from Haemophilus influenzae was shown to interact not only with its corresponding membrane domain TRAPHi-SiaQM but with at least one additional transporter. It was thereby excluded that TRAPHi- SiaP transfers N-acetylneuraminic acid to the only native E. coli TRAP transporter TRAPEc-YiaMNO and suggested to rather interact with a SBP dependent ABC transport system as this protein family represents the largest SBP dependent protein group in E. coli (Moussatova et al. 2008).
Baleen whales (Mysticeti) are a clade of highly adapted carnivorous marine mammals that can reach extremely large body sizes and feature characteristic keratinaceous baleen plates used for obligate filter feeding. From a conservation perspective, nearly all baleen whale species were hunted extensively over a roughly 100 years lasting time period that depleted many of the respective whale stocks with so far unknown consequences for e.g. their molecular viability. From an evolutionary perspective, the lack of fossil records together with conflicting molecular patterns resulted in a still unclear and debated phylogeny of modern baleen whales, particularly in rorquals (Balaenopteridae). In this dissertation, I will demonstrate the application of baleen whale genomes to tackle these open questions by using modern approaches of conservation and evolutionary genomics.
Conservation genomic aspects of baleen whales were addressed in two projects, both using whole genome data of either an Icelandic fin whale (Balaenoptera physalus) population or multiple blue whale (Balaenoptera musculus) populations to evaluate the impact of the industrial whaling era on their molecular viability. The results suggest a substantial drop in effective population size of both species but also a lack of manifestation in genotypes of the fin whale population when compared to the blue whale populations. Especially the rare and short runs of homozygosity (ROH), usually indicative for inbreeding, suggest frequent outcrossing in fin whales while all analyzed blue whale populations featured long and frequent ROH. In addition to these analyses, genome data of blue whale populations was further used to evaluate if northern hemisphere blue whales diverged into different subspecies. Population genetic and gene flow analyses showed clearly separated and well isolated populations in accordance with their assumed geographical distance. In contrast, the genome-wide divergence between all blue whale populations was low compared to other cetacean populations and to the next closely related sei whale species. Because this includes the morphologically different and well recognized pygmy blue whale subspecies, a proposal was made to equally categorize the two northern-hemisphere blue whale populations as subspecies.
Evolutionary aspects were addressed in a third project, by constructing the genome of the pygmy right whale (Caperea marginata) and testing its potential in phylogenetics and cancer research. Phylogenomic analyses using fragments of a whole-genome alignment featuring nearly all extant baleen whales, allowed the revision of the complex evolutionary relationships of rorquals by quantifying and characterizing the amounts of conflicts in early diverging branches. These relationships were further used to identify phylogenetically independent pairs of baleen whales with a maximum of diverging body size differences to compare rates of positive selection between their genomes. The results suggest nearly evenly distributed frequencies of alternative topologies which supports the representation of the early divergence of rorquals as a hard polytomy with high amounts of introgression and incomplete lineage sorting. Within the set of available genomic data, three independent pairs of baleen whales with diverging body sizes were found and comparisons of positive selection rates resulted in many potentially body size and cancer related genes. The lack of conserved selection patterns, however, suggest a more convergent evolution of size and cancer resistance like previously discussed in paleontology.
In conclusion, the application of whole genome data using methods of conservation genetics allowed for a comprehensive estimation about the molecular viability of blue and fin whales as well as an assessment of the taxonomic status of northern-hemisphere blue whale populations. The rather different results between blue and fin whales underlines the importance of genomic monitoring of baleen whales because different species show rather different molecular consequences of their potentially varying depletions. Furthermore, as showcased for the northern-hemisphere blue whale, many important isolated populations of baleen whales may still be unknown to conservation management and genome-wide comparisons will most likely contribute to overcome this under-classification problem. The application of whole genome data in evolutionary research allowed the characterization of the complex patterns of molecular conflicts within baleen whales and especially rorquals that will contribute to the still rather unclear understanding of their evolution. The here found molecular support for the idea of convergent evolution of gigantism in whales will further guide the search for molecular patterns responsible for Peto’s paradox.
Precise intensity monitoring at CRYRING@ESR: on designing a Cryogenic Current Comparator for FAIR
(2023)
In the field of today’s beam intensity diagnostic there is a significant gap in the non-interceptive, calibrated measurement of the absolute intensity of continuous (unbunched) dc beams with current amplitudes below 1 μA. At the Facility for Antiproton and Ion Research (FAIR) low-intensity DC beams will occur during slow extraction from the synchrotrons as well as for coasting beams of highly-charged or exotic nuclei in the storage rings. The lack of adequate beam instrumentation limits the experimental program as well as the accuracy of experimental results.
The Cryogenic Current Comparator (CCC) can close the diagnostic gap with a high-precision dc current reading independent of ion-species and of beam parameters. However, the established detector design based on a core with high magnetic permeability and on a radial shield geometry has well-known weaknesses concerning magnetic shielding efficiency and intrinsic current noise. To eliminate these weaknesses, a novel coreless CCC with a co-axial shield was constructed and combined with a high-performance SQUID contributed by the Leibniz-Institute of Photonic Technology (Leibniz-IPHT Jena). The new axial CCC model was compared to a radial CCC with the established design provided by the Friedrich-Schiller-University Jena. According to numerical simulations prepared at TU Darmstadt and test measurements of the detectors in the laboratory, the new design offered a significant improvement of the shielding factor – from 75dB to 207dB at the required dimensions – and eliminated all noise contributions from the core material, promising an improved current resolution. Although the lower inductance of the pickup coil reduced the coupling to the beam significantly, the noise properties of the new CCC type were comparable to the classical version with a high-permeability core. However, the expected decrease of the low-frequency noise and thus an increase of the current resolution could not be observed at this stage of development.
Consequently, the classical CCC based on the radial shielding and high-permeability core had to be installed in CRYRING@ESR to provide best possible intensity measurements for the upcoming experimental campaign. In CRYRING the CCC was operated with beam currents between 1nA and 20μA and with different ion species (H, Ne, O, Pb, U). It was shown that the CCC provides a noise-limited current resolution of better than 3.2 nArms at a bandwidth of 200 kHz as well as a noise level below 40 pA/√Hz above 1 kHz. During the operation, the main noise sources of the accelerator environment had to be identified and suitable mitigation strategies were developed. Temperature and pressure fluctuations were suppressed with a newly-designed cryogenic support system based on a 70 l helium bath cryostat, developed and built in collaboration with the Institut für Luft- und Kältetechnik Dresden, in combination with a helium re-liquefier. The cryogenic operating time was restricted to around 7 days, which must be expanded significantly in the future. Digital filters were developed to remove the perturbations of the helium liquefier and of the neighboring dipole magnets. Given the promising results the CCC system can be considered as a prototype for future CCCs at FAIR.
Compaction and spheroid formation modulates stemness and differentiation of human pancreas organoids
(2023)
The incidence of diabetes type 1 (T1D) in children and young adults is increasing worldwide. T1D is well treated by insulin administration. However, there is currently no long-lasting cure for this ailment. The success rate of pancreatic islet transplantation to treat T1D is limited by the availability of patient-matched islets and the necessity of using life-long immunosuppressive medication. The difficulties caused by transplantation can be overcome by generating bio-engineered pancreatic islets from patient-derived progenitor cells. Aim of this thesis is to establish new strategies for the generation and analysis of pancreatic lineages derived from human progenitor cells. It reports on the optimization of a technique to form human pancreatic spheroids from hollow monolayered human pancreas organoids (hPOs) to investigate how cell-cell and cell-matrix interaction can be leveraged to induce endocrine differentiation of the pancreas progenitor cell organoids. We introduce cell aggregation protocols to generate endocrine pancreas cell lineages from ductal pancreatic cells. Next, we study the effect of co-culture with stromal and endothelial cells to promote cell differentiation toward a pancreatic fate enhancing β cells productivity.
This thesis has focused on identifying the differences in gene expression along with phenotypical transformation during differentiation of human pancreatic organoids (hPOs) towards human β cells to be used in the future of cellular therapeutics in treating T1D patients.
Gastroschisis und Omphalozele zählen zu den häufigsten angeborenen Bauchwanddefekten. Dabei wird zwischen einfacher (ohne sekundäre Darmveränderungen) und komplexer (mit sekundären Darmveränderungen) Gastroschisis unterschieden. Bei der Omphalozele ist es wichtig, ob eine Protrusion der Leber vorliegt. Die Therapie beider Fehlbildungen besteht aus der Reposition der Bauchorgane in den Bauchraum und einem operativen Bauchdeckenverschluss in den ersten Lebenstagen.
Daten zu Langzeitverläufen nach dem operativen Bauchdeckenverschluss, insbesondere in Hinblick auf gastrointestinale Komplikationen mit erneutem chirurgischen Interventionsbedarf, sind in der Literatur rar.
Ziel dieser Studie ist es daher, die Inzidenz und die Art von operativen Eingriffen nach dem Bauchdeckenverschluss bei Patienten mit einer Gastroschisis und einer Omphalozele nach einem Bauchdeckenverschluss am eigenen Patientenkollektiv zu untersuchen. Hierzu wurden die Akten aller Patienten mit Gastroschisis und Omphalozele, die in der Klinik für Kinderchirurgie und Kinderurologie des Universitätsklinikums Frankfurt von 2010 bis 2019 behandelt wurden, retrospektiv ausgewertet. Die Inzidenz von Operationen nach Bauchdeckenverschluss wurde anhand der mittleren kumulativen Ein-Jahres-Anzahl an Operationen pro Patienten und der kumulativen Ein-Jahres-Inzidenz der Operationen ermittelt.
Insgesamt wurden 61 Patienten identifiziert. Nach Ausschluss von vier Patienten (Krankenhausverlegung (ein Patient) und Versterben (drei Patienten)) konnten die Verläufe von 33 Patienten mit Gastroschisis (18 mit einfacher und 15 mit komplexer Gastroschisis) und 24 Patienten mit Omphalozele (je zwölf mit und ohne Leberprotrusion) ausgewertet werden.
Bei 23 Patienten mit Gastroschisis und bei 20 Patienten mit Omphalozele kam es innerhalb des ersten Jahres nach Bauchdeckenverschluss zu erneuten Operationen. Das Risiko sich einer erneuten Operation unterziehen zu müssen, war bei Patienten mit komplexer Gastroschisis signifikant höher als bei Patienten mit einfacher Gastroschisis (kumulative Ein-Jahres-Inzidenz: 64,3% vs. 24,4%; p= 0,05). Zwischen den beiden 6 Formen der Omphalozele bestand kein Unterschied in der Inzidenz chirurgischer Eingriffe. Im Median kam es bei Patienten mit Gastroschisis nach 84 Tagen und bei Patienten mit Omphalozele nach 114,5 Tagen zu einer erneuten Operation.
74% der Patienten mit Gastroschisis und 30% der Patienten mit Omphalozele wurden aufgrund einer gastrointestinalen Komplikation operiert. Die Patienten mit komplexer Gastroschisis hatten im Vergleich zu Patienten mit einfacher Gastroschisis ein signifikant erhöhtes Risiko für eine Operation zur Behandlung einer gastrointestinalen Komplikation (kumulative Ein-Jahres-Inzidenz 64,3% vs. 11,1%; p= 0,015). In Bezug auf die Anzahl der Operationen pro Patienten und Jahr hatten die Patienten mit komplexer Gastroschisis und Patienten mit Omphalozele und Leberprotrusion die meisten operativen Eingriffe (kumulative Ein-Jahres-Anzahl 1,664 und 1,417 vs. einfache Gastroschisis (0,326) und Omphalozele ohne Leberprotrusion (0,333)). Dieses Verhältnis spiegelt sich auch in der kumulativen Ein-Jahres-Anzahl an Operationen mit gastrointestinalen Indikationen wider (komplexe Gastroschisis: 1,462 Operationen; Omphalozele mit Leberprotrusion: 0,500 Operationen; einfache Gastroschisis: 0,111 Operationen; Omphalozele ohne Leberprotrusion: keine Operation)
Nach dem Bauchdeckenverschluss kam es zu zwei Todesfällen bei Patienten mit komplexer Gastroschisis und zu drei Todesfällen bei den Patienten mit Omphalozele und Leberprotrusion. Bei den beiden Patienten mit komplexer Gastroschisis lag eine gastrointestinale Ursache vor (Leberversagen, Dünndarmvolvulus). Die Patienten mit der Omphalozele verstarben aufgrund assoziierter kardialer und pulmonaler Erkrankungen. Die Daten zeigen, dass Patienten mit Gastroschisis und Omphalozele im ersten Lebensjahr nach dem Bauchdeckenverschluss ein hohes Risiko für weitere Operationen haben. Patienten mit komplexer Gastroschisis und mit einer Omphalozele und Leberprotrusion haben das größte Risiko für eine erneute Operation nach Bauchdeckenverschluss. Bei Patienten mit einfacher Gastroschisis und Omphalozele ohne Leberprotrusion ist dieses Risiko gering. Die Mehrzahl der Operationen erfolgt aufgrund von gastrointestinalen Ursachen. Nur bei Patienten mit komplexer Gastroschisis tragen gastrointestinale Komplikationen zu einer erhöhten Mortalitätsrate bei. Die Ergebnisse dieser Arbeit können für Aufklärungs- und Beratungsgespräche von Eltern von Kindern mit Gastroschisis und Omphalozele herangezogen werden.
N6-methyladenosine (m6A) is the most abundant and well understood modification in eukaryotic mRNA and was first identified in polyadenylated parts of the mRNA.The distinct distribution of m6A in the transcriptome with special enrichment in long internal exons, 39UTRs and around stop codons was uncovered by early biochemical work and later on antibody based sequencing techniques. The so called m6A writer, reader and eraser machinery is responsible for the dynamic and with that regulatory nature of the m6A modification. As m6A writer, the human N6-methyltransferase complex (MTC) cotranscriptionally methylates the central adenine within a RRACH (preferably GGACU) sequence context to form m6A in the nascent RNA chain.9–15 The catalytic core of the complex is formed by the two proteins METTL3 and METTL14, with the active site located in the methyltransferase domain (MTD) of METTL3.16–18 The DPPW motif near the methyl donor S-adenosylmethionine (SAM) binding site in this MTD was postulated to bind the target adenine during catalysis. Moreover, a positively charged groove in the METTL3-METTL14 interface, the C-terminal RGG domain in METTL14 and the zinc finger motifs in METTL3 were identified as important domains for RNA binding. However, to date there are no full-length or substrate-RNA-bound structures of the catalytic METTL3-METTL14 complex.
In addition, a set of accessory proteins assembles to the METTL3-METTL14 heterodimer to form the full MTC, mediated by WTAP that firmly binds to the N-terminal leader helix in METTL3.20 WTAP was shown to locate the whole complex to the nuclear speckles and can modulate m6A deposition to specific sites in the RNA. Moreover, WTAP acts as binding platform for other accessory proteins including VIRMA, RBM15, ZC3H13 and HAKAI that are mostly identified to mediate position specific methylation. For example, RBM15 was shown to mediates region-selective methylation in a WTAP dependent manner, directing specificity towards U-rich sequences.
The observed specificity of the methyltransferase complex to methylate only site specific DRACH sequenced is still poorly understood. Some possible modulators like the role of the accessory proteins are under investigation, however, the structural context of the RNA methylation sites or a structural preference of the complex have been mainly neglected so far. Moreover, the structural dynamics of this methylation process still remain elusive. This thesis contributes to the afore-mentioned aspects by analysis of the methylation process regarding RNA structure sensitivity with enzymatic activity assays and its dynamic nature by implementing a smFRET approach.
We hypothesized the target RNA secondary structure to be an additional important modulator of methylation efficiency, based on the RNA binding elements of the complex (positively charged binding groove, zinc finger domain, RGG domain) and the supposed target adenine binding in the active site. Here, we postulated the possibility for a flipped-out adenine to be of special relevance, which is closely related to the local stability of the target adenine containing structure. Moreover, efficient binding of the protein complex to the RNA should require the ability to anchor the RNA on both sides of the target sequence.
Neuroendokrine Tumoren (NET) sind eine seltene Krankheit mit einem breitgefächerten heterogenen Erscheinungsbild, wodurch sich die Diagnose der Tumoren aus einer Vielzahl aus Gründen häufig um Jahre verzögert (1). In dieser Arbeit analysierten wir einen großen Datensatz in einem tertiären Referenzzentrum (UKF) von 1984-2019, um die Symptomatik vor der Diagnose des Tumors sowie den Zeitraum von der Tumormanifestation bis zur Diagnose weiter zu klären. Für die deskriptiven Analysen kamen SPSS, Cox-Regression und Log-Rank-Test zur Anwendung.
Insgesamt schloss die retrospektive Studie 488 gastroenteropankreastische (GEP)-NET mit 486 Patienten ≥ 18 Jahren ein, wovon knapp mehr als die Hälfte männlich (52,9%) waren. Das mittlere Alter bei Erstdiagnose (ED) betrug 58 Jahre (477/486, 9 unbekannt). Die häufigsten Primärtumorlokalisationen stellten Pankreas (143/488 Patienten) und Dünndarm (145/488 Patienten) dar. Die Mehrheit der NET waren langsam wachsende G1-Tumoren mit einem Ki67 < 3% (155/330). Die Hälfte der Patienten entwickelten im Verlauf Fernmetastasen, wobei die meisten bereits bei der ED vorlagen und insbesondere die Leber als Metastasierungsorgan dominierte. Bei mehr als 60% der Patienten konnten Angaben zur klinischen Symptomatik vor der ED detektiert werden, wovon wiederum mehr als die Hälfte symptomatisch waren. 42% der symptomatischen Patienten zeigten NET-spezifische Symptome (Bauchschmerzen 77/128; 60,2%, Durchfall 51/128; 39,8%, Flush 19/128; 14,8%, Karzinoidsyndrom 8/128; 6,3% Tachykardie 6/128; 4,7%). In der primären bildgebenden Diagnostik dominierten konventionelle Bildgebungen wie Sonographie und Computertomographie (CT), wobei nuklearmedizinische Diagnostik eine Seltenheit darstellte. Mehr als 30% der Tumoren wurden als Zufallsbefunde im Rahmen einer bildgebenden Diagnostik oder Operation diagnostiziert. Die Mehrheit der Patienten stellte sich initial außerhalb unserer Klinik vor, nur etwa 15% wurden innerhalb unserer Klinik insbesondere in der Gastroenterologie vorstellig, wo der NET diagnostiziert wurde.
Die Phase von der Tumormanifestation bis zur ED aller NET betrug im Median 17 Tage. Das Vorhandensein von Fernmetastasen sowie Symptomen führte zu keiner signifikanten Kürzung der Phase und einer schnelleren ED des NET (Median 65,5 vs. 90 Tage, p = 0,4).
Large international airports were identified as sources of ultrafine particles (UFPs) (Hu et al., 2009; Yu et al., 2012; Hsu et al., 2013; Keuken et al., 2015; Hudda and Fruin, 2016). Since September 2017 UFP emissions originating from the Frankfurt International Airport, Germany are monitored by the Hessian Agency for Nature Conservation, Environment and Geology (HLNUG) showing elevated UFP concentrations during airport operating hours (05:00–23:00 CET) (Ditas et al., 2022). Referring to that, the organic chemical composition of aviation-related UFPs emerging from the Frankfurt Airport was analysed by performing a comprehensive non-target screening of UFP filter samples.
Aluminium-filter samples were collected at an air quality monitoring station 4 km north of the Frankfurt Airport, using a 13-stage impactor system (Nano-MOUDI). The chemical
characterization of UFPs in the size range of 10-18 nm, 18-32 nm and 32-56 nm was accomplished by ultra-high-performance liquid chromatography, heated electrospray ionisation and mass analysis using an Orbitrap high-resolution mass spectrometer. Non-target screening revealed that the majority of detected compounds belong to homologous series of two different types of organic esters, which are base stocks of aircraft lubrication oils.
In reference to five different jet engine lubrication oils of various manufacturers, the corresponding lubricant base stocks and their additives, two amines and one organophosphate, were identified in the UFPs by the use of matching retention time, exact mass and MS/MS fragmentation pattern of single organic molecules. The quantitative analysis of the jet engine oil constituents in the aviation-related UFPs with diameters < 56 nm was accomplished by standard addition. By characterizing the Nano-MOUDI, loss factors for each size stage were determined and used for correction accordingly. Particle-number size distribution measurements, conducted parallel to the filter sampling, enabled the determination of the jet engine oil contribution to the UFP mass.
Furthermore, the nucleation and particle formation potential of a commonly used synthetic jet engine lubrication oil was investigated in the laboratory. Thermodenuder experiments at 20 °C and 300 °C were carried out to monitor the gas-to-particle partitioning behaviour of jet engine oils. At 300 °C a significantly higher number of particles with a mean diameter of ~10 nm are formed, leading to a more than fivefold increase in total particle numbers compared to 20 °C. Particle diameters of the newly formed oil particles in the laboratory experiment appeared in the same size region as UFPs emerging from Frankfurt Airport. Particles originating from the Frankfurt city centre direction showed larger diameters.
Results indicate that aircraft emissions strongly influence the total mass of 10-18 nm particles. The jet oil fraction decreases for bigger particles (e.g., 18-56 nm), implying that these oils form new particles in the cooling exhaust gases of aircraft engines. In addition, non-target screening and in vitro bioassays on aviation-related PM2.5 filter samples were combined to provide indications for potential toxicologically relevant compounds in dependence of different wind directions and airport operations. Most recently, the applied non-target screening method was also used to identify seasonal variations in the organic aerosol composition in Beijing.
The production of ribosomes is a complicated multistep, that is susceptible to changes occurring within the cell and its environment. The process itself requires many proteins, known as ribosome biogenesis factors (RBFs) and many non-coding RNAs like the small nucleolar RNAs (snoRNAs). While RBFs are required for the accurate processing of the pre-rRNA into mature rRNAs, the snoRNAs act to coordinate and guide enzymes for post-transcriptional modifications, chiefly 2´-O-ribose methylation and pseudouridylation. While ribosome biogenesis is mostly described in human and yeast model eucaryotes, similar detailed studies in the model plant Arabidopsis thaliana are far less explored and understood. Furthermore, for many experimentally confirmed modification sites the according snoRNAs and for many pre-rRNA processing steps the responsible RBFs are missing. Therefore, it is expected that a high number of snoRNAs and RBFs are not identified till yet. For this reason, RNA-deep sequencing was performed in order to identify novel snoRNAs and MS analysis data of nucleoli and nuclei of A. thaliana from a former PhD student were used in order to find new proteins involved in pre-rRNA processing.
In here, it is shown that with RNA deep-sequencing still new snoRNAs and snRNAs can be identified and that detection of predicted snoRNAs can be fulfilled with a) antisense oligonucleotides tagged with fluorescence dyes and b) with radioactive labeled antisense probes. Furthermore, a secondary structure map of the 60S and 40S subunit highlighting the predicted and moreover verified modification sites in 5.8S, 25S and 18S rRNA was created. Especially, the correlation between the modification sites and the guiding snoRNA is highlighted further shedding light on overview about current pre-rRNA modification sites and corresponding guiding snoRNAs. The next chapter reveals the complex and multi-layered existence of the 5.8S rRNA and its numerous precursors. The mutant prp24 (also known as seap1) encoding AtPRP24, is recognized as factor being important for splicing as it is promoting the recruitment of the U4 and U6 snRNAs to the spliceosome. In here, it was found that AtPRP24 is involved in processing of 5.8S rRNA precursors, recognizable by precursors that are over accumulating in the mutant. Moreover, it could be shown for the first time that the plant-specific precursor 5´-5.8S is exported to the cytoplasm, where final cleavage steps of 5.8S rRNA takes place. In the prp24.2 mutant, this precursor is exported at an increased rate to the cytoplasm, where it can be detected in the actively translating ribosomes (polysomes). A lower sensitivity of the mutant seeds to cycloheximide (CHX) suggests that due to the extension at the 5´-end of 5.8S, the structure of the 60S subunit has altered CHX binding. In conclusion, this work highlights the importance and complexity of 5.8S rRNA and its precursors for ribosome biogenesis and displays new insights into pre-rRNA processing in A. thaliana.
The formation of aliphatic α-amino acids by X-ray induced carboxylation of simple amines or amination of simple carboxylic acids is not favored over the formation of other amino acids. The new carboxylic and amino groups are more or less distributed statistically over the carbon atoms of the starting material. On radiationchemical formation of aliphatic hydrocarbons over C3, therefore, an increasing amount of unusual amino acids is produced. The results are influenced by various parameters such as temperature, pH, concentration, linear energy transfer and total dosis of radiation applied. Also peptides can be formed radiationchemically. However, the formation of greater molecules by radiationchemical processes under the conditions of a primitive earth seems to have only a low probability. The reaction mechanisms of radiationchemical carboxylation and amination are discussed.
Xylose, an abundant sugar fraction of lignocellulosic biomass, is a five-carbon skeleton molecule. Since decades, utilization of this sugar has gained much attention and has been in particular focus as a substrate for production of biofuels like ethanol by microbial hosts, including Saccharomyces cerevisiae. In this yeast, xylose is naturally not used as a carbon source, but its utilization could be achieved by metabolic engineering either via the oxidoreductive route or through the isomerase pathway. Both pathways share xylulose as a common intermediate that must be phosphorylated before entering the endogenous metabolism via the non-oxidative pentose phosphate pathway (noxPPP). Besides this, in some bacteria a non-phosphorylating oxidative pathway for xylose degradation exists, known as Weimberg pathway, where a molecule of xylose is converted by a series of enzymes - xylose dehydrogenase (XylB), xylonate dehydratase (XylD), 3-keto-2-deoxy-xylonate dehydratase (XylX) and α-ketoglutarate semialdehyde dehydrogenase (KsaD) - to form α-ketoglutarate (AKG). Besides having several useful properties as a product, AKG could also be used for cell growth as an intermediate of the tricarboxylic acid (TCA) cycle. One target of the present study is to establish a functional Weimberg pathway in S. cerevisiae. Previous studies have shown that this task is not trivial, for instance due to the toxicity of xylonate (the first metabolite of the pathway) and the involvement of an iron-sulfur cluster dependent enzyme, the D-xylonate dehydratase. The assembly of iron-sulfur clusters on a heterologous protein in yeast is known to be challenging.
To establish the Weimberg pathway in yeast, the genes xylB, xylD, and xylX were obtained from Caulobacter cresentus and ksaD was from Corynebacterium glutamicum. In a variant, the dehydratase xylD was replaced with orf41 from Arthrobacter nicotinovorans, which is believed to be independent of iron-sulfur clusters. Growth of yeast cells on xylose as a sole carbon source was expected as an indicator of a functional Weimberg pathway. However, the heterologous expression of the codon optimized genes was not sufficient to reach this goal. Due to the complexity of the interactions of the heterologous pathway with the endogenous cellular processes, it was assumed that potential limitations could be overcome by adaptive laboratory evolution, using xylose as a sole source of carbon. Increasing selection pressure was applied on a strain with Weimberg pathway genes integrated into the genome over several generations. As a variant of the evolutionary engineering approach, mutator strains were generated. For this, RAD27 and MSH2 genes were deleted, which are involved in nucleotide excision and mismatch repair mechanisms, respectively. Some of the resulting strains PRY24, PRY25, PRY27 and PRY28 were able grow in xylose as a sole carbon source after evolutionary engineering. As a control, a non-mutator strain PRY19 was also included. Strikingly, only the mutator strains were able to consume xylose as a sole carbon source, which shows the feasibility of the approach.
In addition to the mutator strain strategy, a further approach employed in the present study was the simultaneous expression of the Weimberg pathway in the cytosol and mitochondria. This was based on the reasoning that the iron-sulfur cluster biogenesis on XylD may be improved in the organelle and that the AKG is an intermediate of the TCA cycle. In the strain AHY02, all enzymes of the pathway were tagged with mitochondrial targeting signals in addition to a full cytosolically localized pathway. The localization of the mitochondrial variants was confirmed by fluorescence microscopy. Together with AHY02, CEN.PK2-1C wild type strain was also included as a control for evolution. When a selection pressure on xylose was applied, both strains - AHY02 and CEN.PK2-1C - were able to grow in the course of evolution. Deletion of the xylulokinase (XKS1) gene was found to be detrimental for both evolved strains in xylose-containing media. This suggests that the evolution of the endogenous oxidoreductive and noxPPP genes is responsible for growth of the evolved cells. For the evolved strain AHY02, it could also be possible that the Weimberg pathway genes supported to growth in addition to the oxidoreductive route. To elucidate the underlying molecular mechanisms, genome sequencing and reverse engineering approaches would be necessary in future.
In addition to screening for growth on xylose as a sole carbon source, a less stringent screening system was created to examine even a minor flux of xylose towards AKG. For this, all genes necessary for conversion of isocitrate to AKG where deleted, yielding a glutamate auxotrophic strain. In this system, the cells can grow on other carbon sources, whereas xylose is only provided as a source of AKG for the synthesis of glutamate...
This thesis deals with several aspects of non-perturbative calculations in low-dimensional quantum field theories. It is split into two main parts:
The first part focuses on method development and testing. Using exactly integrable QFTs in zero spacetime dimensions as toy models, the need for non-perturbative methods in QFT is demonstrated. In particular, we focus on the functional renormalization group (FRG) as a non-perturbative exact method and present a novel fluid-dynamic reformulation of certain FRG flow equations. This framework and the application of numerical schemes from the field of computational fluid dynamics (CFD) to the FRG is tested and benchmarked against exact results for correlation functions. We also draw several conclusions for the qualitative understanding and interpretation of renormalization group (RG) flows from this fluid-dynamic reformulation and discuss the generalization of our findings to realistic higher-dimensional QFTs.
The topics discussed in the second part are also manifold. In general, the second part of this thesis deals with the Gross-Neveu (GN) model, which is a prototype of a relativistic QFT. Even though being a model in two spacetime dimensions, it shares many features of realistic models and theories for high-energy particle physics, but also emerges as a limiting case from systems in solid state physics. Especially, it is interesting to study the model at non-vanishing temperatures and densities, thus, its thermodynamic properties and phase structure.
First, we use this model to test and apply our findings of the first part of this thesis in a realistic environment. We analyze how the fluid-dynamic aspects of the FRG realize themselves in the RG flow of a full-fledged QFT and how we profit from this numeric framework in actual calculations. Thereby, however, we also aim at answering a long-standing question: Is there still symmetry breaking and condensation at non-zero temperatures in the GN model, if one relaxes the commonly used approximation of an infinite number of fermion species and works with a finite number of fermions? In short: Is matter (in the GN model) in a single spatial dimension at non-zero temperature always gas-like?
In general, we also use the GN model to learn about the correct description of QFTs at non-zero temperatures and densities. This is of utmost relevance for model calculations in low-energy quan- tum chromodynamics (QCD) or other QFTs in medium and we draw several conclusions for the requirements for stable calculations at non-zero chemical potential.
Identification of new natural products from nematode-associated bacteria using mass spectrometry
(2023)
This work aims to find unknown natural products produced by bacteria, that live in close association with nematodes and to elucidate their structure by using mass spectrometry.
The first chapter of this work is dedicated to the detection of hitherto unknown natural products by using a metabolomics approach and subsequent structure elucidation of said compounds. This chapter includes metabolomics analysis of Xenorhabdus szentirmaii wild type and knockout mutants, overproduction of the target compound, identification of derivatives from other strains and MS based structure elucidation.
The second and third chapters are about natural products that protect C. elegans from B. thuringiensis infections.
The second chapter deals with natural products that protect the nematode host without killing the pathogen. I deployed molecular biology methods to generate deletion and overproduction strains of a target compound, identified it via LC-MS/MS analysis and used LC-MS/MS and lipidomics to analyse the chemical properties of the active compound.
The third chapter aims at finding natural products, which are produced by Pseudomonas strains MYb11 and MYb12, respectively. These natural products display the ability to protect C. elegans by killing B. thuringiensis. I identified said compounds via fractionation and subsequent bioactivity testing. After identification, I generated production strains of the target compounds and elucidated the structure of the bioactive derivative.
The last chapter deals with the structure elucidation of peptides produced by an unusual GameXPeptide synthetase in Xenorhabdus miraniensis. I analysed producer strains of GameXPeptides using LC-MS and elucidated the structural differences between the known GameXPeptides, produced by P. luminescens TT01, and the unusual ones produced by X. miraniensis.
Investigation of the kinematics involved in compton scattering and hard X-ray photoabsorption
(2023)
The present work investigates the kinematics of Compton scattering at gaseous, internally-cool helium and molecular nitrogen targets in the high- and the low-energy regime. Additionally, photoionization at molecular nitrogen with high-energy photons is investigated. These exeprimental regimes were previously inaccessible due to the extremely small cross sections involved. Nowadays, the third- and fourth-generation synchrotron machines produce sufficient photon flux, enabling the investiagtion of the above processes. The utilized cold-target recoil-ion momentum spectroscopy (COLTRIMS) technique further increases the detection efficiency of the observed processes, since it enables full-solid-angle detection by exploiting momentum conservation.
Compton scattering is investigated at both high (helium and N2) and low (helium) photon energies. In the high-energy regime, the impulse approximation is mostly valid, which is not the case for the low-energy regime. The impulse approximation assumes that the Compton-scattering process takes place at a free electron with a momentum distribution as if it was bound, thus ignoring the binding energy of the system. In the low-energy regime, the impulse approximation is not valid.
Photoionization is investigated at high photon energies, where the linear momentum of the photon cannot be neglected, as is the fashion of the commonly used dipole approximation.
Die vorliegende Dissertation mit dem Titel “Structural dynamics of eukaryotic H/ACA RNPs from Saccharomyces cerevisiae & Structural dynamics of the Guanidine-II riboswitch from Escherichia coli” besteht aus zwei Projekten. Das erste Projekt befasst sich mit den eukaryotischen H/ACA Ribonukleoproteinen (RNP) aus der Hefe. Diese können sequenzspezifisch in der RNA ein Uridin Nukleotid in das Rotationsisomer Pseudouridin (Ψ) umwandeln. Die H/ACA RNPs bestehen aus einer Leit-RNA und vier Proteinen, der katalytisch aktiven Pseudouridylase Cbf5, Nhp2, Gar1 und Nop10. Die Leit-RNA besteht in Eukaryoten konserviert aus zwei Haarnadelstrukturen, die von einem H-Box oder ACA-Box Sequenzmotiv gefolgt sind. In jeder dieser Haarnadeln befindet sich ein ungepaarter Bereich, die sogenannte Pseudouridylierungstasche, wo durch komplementäre Basenpaarung die Ziel-RNA gebunden wird. Fehlerhafte H/ACA RNPs können beim Menschen zu schweren Krankheiten wie verschiedenen Krebsarten oder dem Knochenmarksversagen Dyskeratosis congenita führen, aber sie bieten auch Möglichkeiten zum Einsatz als Therapiemethode. In dieser Arbeit wurde hauptsächlich der zweiteilige Aufbau der H/ACA RNPs untersucht.
Dafür wurden zunächst die einzelnen Komponenten hergestellt werden. Cbf5, Nop10 und Gar1 wurden zusammen heterolog in E. coli exprimiert und gereinigt. Außerdem wurden mehrere Deletionsvarianten von Gar1 hergestellt. Zusätzlich wurde die Leit-RNA unmarkiert über T7 Transkription synthetisiert, sowie sechs verschiedene FRET-Konstrukte mit verschiedenen Markierungschemas der Fluorophore Cy3 und Cy5 über DNA-geschiente Ligation. Anschließend wurde über Größenausschlusschromatographie und radioaktiven Aktivitätsassays geprüft, dass sich die aktiven H/ACA RNPs in vitro aus den einzelnen Komponenten rekonstituieren lassen.
In smFRET Experimenten wurden einzelne Haarnadelstrukturen mit dem zweiteiligen Komplexen verglichen. Dabei konnte gezeigt werden, dass die H3 Haarnadel durch die Anwesenheit von H5 dynamischer und heterogener wurde, während H5 überwiegend unbeeinflusst war. Außerdem konnte die dreidimensionale Orientierung der Haarnadelstrukturen in verschiedenen Assemblierungsschritten mittels smFRET untersucht werden. Hier deutete sich an, dass in Abwesenheit von Proteinen beide Haarnadeln eher entgegengesetzt stehen als in einer parallelen Konformation. Cbf5 scheint den Linker zwischen den Beiden auszustrecken bzw. zu orientieren und die Haarnadelstrukturen etwas gegeneinander zu neigen. Ein Zusammenspiel von Nhp2 und Gar1 war nötig um die oberen Bereiche der Haarnadeln zusammenzuziehen. Es konnte auch ein Modell für den vollen H/ACA RNP vorgeschlagen werden. Im kompletten Komplex könnte das Zusammenziehen der Haarnadelstrukturen durch Nhp2 und Gar1 mit dem Effekt von Cbf5 konkurrieren und könnte hauptsächlich den oberen Bereich von H3 betreffen. Zum Schluss wurde das Zusammenspiel von Gar1 und Nhp2 auf eine Abhängigkeit von den RGG Domänen von Gar1 hin untersucht. Hier besteht möglicherweise eine Hierarchie, die eine Kooperativität von den N- und C-terminalen Domänen benötigt.
Das zweite Projekt befasst sich mit dem Guanidin-II Riboschalter aus E. coli. Der Riboschalter kann das toxische Molekül Guanidinium (Gdm+) spezifisch in seiner Aptamerdomäne binden und dadurch die Genexpression von Proteinen zur Detoxifizierung von Gdm+ aktivieren. Der Riboschalter besteht aus zwei Haarnadelstrukturen, mit einer Schleife, die aus der Sequenz ACGR besteht, wobei R ein Purin ist. In einem vorgeschlagenen Modell soll die Ribosomenbindestelle (Shine-Dalgarno Sequenz) in Abwesenheit von Ligand mit dem Linker komplementär Basenpaaren und so die Translation verhindern. Mit Ligand würde sich dann eine Schleifen-Schleifen Interaktion mit den beiden CG Basen ausbilden, wodurch die Anti-Shine-Dalgarno Sequenz nicht mehr zugänglich wäre. Bisherige Studien arbeiteten zumeist nur mit der Aptamerdomäne, den einzelnen Haarnadeln oder noch kleineren Elementen. In dieser Arbeit wurden die Strukturdynamiken von verschiedenen Längen, auch mit der Expressionsplatform, untersucht. Außerdem wurden verschiedene Mutationen analysiert und die Effekte auf den Riboschalter in seiner natürlichen Umgebung in E. coli.
Zunächst mussten insgesamt 24 FRET-Konstrukte hergestellt werden, die sich in Länge, Markierungsschema und Mutationen unterschieden. Hierfür wurde DNA-geschiente Ligation verwendet. Dank der verschiedenen Fluorophorpositionen konnte ein konformationelles Modell für die Aptamerdomäne vorgeschlagen werden. In diesem Modell könnte in Abwesenheit von Ionen das Aptamer offen vorliegen. Durch Mg2+ würde sich bereits eine lockere Schleifen-Schleifen Interaktion ausbilden. Zusätzlich deuten die Ergebnisse auf eine neue Konformation hin, der stabilisierten Schleifen-Schleifen Interaktion, bei der der Linker zusätzlich mit den Haarnadelstrukturen interagiert, beispielswese mit den Purinen an der vierten Schleifenposition...
Adhesion to host cells is the first and most crucial step in infections with pathogenic Gram negative bacteria and is often mediated by trimeric autotransporter adhesins (TAAs). TAA-producing bacteria are the causative agent of many human diseases and TAA targeted anti-adhesive compounds might counteract such bacterial infections. The modularly structured Bartonella adhesin A (BadA) is one of the best characterised TAAs and serves as an attractive adhesin to study the domain-function relationship of TAAs during infection. BadA is a major virulence factor of B. henselae and is essential for the initial attachment to host cells via adhesion to extracellular matrix proteins. B. henselae is the causative agent of cat scratch disease and adheres to fibronectin using its long BadA fibres. The life cycle of this pathogen, with alternating host conditions, drives evolutionary and host-specific adaptations.
Human, feline, and laboratory adapted B. henselae isolates display genomic and phenotypic differences. By analysing the genomes of eight B. henselae strains using long-read sequencing, a variable genomic badA island with a diversified and highly repetitive badA gene flanked by badA pseudogenes was identified. Moreover, numerous conserved flanking genes were characterised, however, their influence on the regulation of badA expression and modification remains to be explored. It seems that B. henselae G 5436 is the evolutionary ancestor of the other B. henselae strains analysed in this work. The diversity of the badA island among the B. henselae strains indicates that the downstream badA-like domain region might be used as a ‘toolbox’ for rearrangements in the badA gene. Overall, it is suggested that badA-domain duplications, insertions, and/or deletions are the result of active phase variation via site-specific recombination and contribute to rapid host adaptation in the scope of pathogenicity, immune evasion, and/or enhanced long-term colonisation.
The model strain B. henselae Marseille expresses a badA gene that includes 30 repetitive neck/stalk domains, each consisting of several predicted structural motifs. To further elucidate the motif sequences that mediate fibronectin binding, various modified badA constructs were generated. Their ability to bind fibronectin was assessed via whole-cell ELISA and fluorescence microscopy. In conclusion, it is suggested that BadA adheres to fibronectin in a cumulative fashion with quick saturation via unpaired β-strands appearing in structural motifs present in BadA neck/stalk domains 19, 27, and other homologous domains. Furthermore, antibodies targeting a 15-mer amino acid sequence in the DALL motif of BadA neck/stalk domain 27 were able to reduce fibronectin binding of the B. henselae mutant strain S27. Moreover, this DALL motif sequence is conserved in the genome of all analysed B. henselae strains. The identification of common binding motifs between BadA and fibronectin supports the development of new anti-adhesive compounds that might inhibit the initial adherence of B. henselae and other TAA-producing pathogens during infection.
This thesis is focusing on the impact of Paratethys and Mediterranean water bodies over the Eurasian climate and the interplay between climate, tectonics and biosphere during the late Miocene. This target was the interval between 12.7 and 7.65 Ma for Paratethys, following the Eastern Paratethys restriction and isolation, and 7.2−6.5 Ma (the early Messinian) in Mediterranean, zooming on the effects of gateway restrictions over the eastern Mediterranean and the new born Aegean domain. In both cases restriction is overlapping with large scale climatic changes and tectonic reconfiguration, leading a sort of symbiotic relationship.
Paratethys was a giant epicontinental sea that covered a large part of Eurasia since Paleogene. Due to the Eurasia-Afro-Arabia collision and formation of the Alpine-Himalayan belt (Rögl, 1999; Popov et al., 2006), the Paratethys was divided during the late Miocene in smaller basins that in time were isolated of each other. The protracted isolation and intense continentalisation of paratethyan realm led to changes in humidity distribution, basin connectivity, sediment sources and salinity. These changes had in turn major consequences over water circulation, water availability, vegetation cover and biota. These changes are more intense after 11.6 Ma, when the Eastern Paratethys lost any sustained marine connection, evolving into an enclosed system with endemic fauna (Harzhauser and Piller, 2007).
Mediterranean Sea is a Mezozoic oceanic relic squeezed between Africa, Europe, Anatolia and Arabia, as Africa continued to subduct beneath the European plate. As opposed to Paratethys, it maintained the open connection with the ocean until Messinian, when the two Atlantic gateways (Betic and Rifian corridors) closed for a short time, isolating the basin. The cut off resulted in a dramatic drop down and onset of evaporitic precipitation in marginal basins, the event receiving the name of Messinian Salinity Crisis (5.97−5.55). The restriction affected all marine ecosystems, due to changes in salinity and stratification of water column.
The main objectives of this thesis were:
(1) build valid paleo-temperatures records for both basins based on biomarkers;
(2) reconstruct the hydrology for the late Miocene time interval;
(3) identify vegetation composition and changes;
(4) identify paleo-fires in the late Miocene sediment records;
(5) identify the biotic response to the overall climate and tectonic changes.
All the above objectives were attained with results published in specific journals (Chapters 5−7).
Based on Panagia section (Taman Peninsula, Russia) the longest Paratethys temperature record was completed (~5 Myr), covering the interval between 12.7 and 7.65 Ma. A comprehensive SST and MAT records was obtained, as well as soil pH and carbon (δ13C) and hydrogen (δ2H) stable isotopic compositions on n-alkanes and alkenones. The main findings are concentrated around three prolonged periods with severe droughts affecting the late Miocene circum-Paratethys region peaking at 9.65, 9.4 and 7.9 Ma, associated with a transition towards open land vegetation, intensification of fire activity and enhanced evaporation and aridity.
The time intervals with dryer conditions recorded in Panagia coincide with periods of mammal turnover and dispersal in Eurasia indicating that major environmental changes occurred in the circum-Paratethys region and Paratethys fragmentation had a great impact on the terrestrial ecosystems, when periods of prolonged droughts generated biotic crises and animal displacements across the Eurasian continent. The δ13CC29n-alkane values and charcoal morphologies from Panagia indicate an increased contribution of C4 plants adapted to drier conditions at 9.66 Ma. Similarly high δ13CC29n-alkane values continue until 9.4 Ma, when in Western Europe increased seasonality accelerated the demise of the evergreen subtropical woodlands and expansion of grasslands from Anatolia and Middle East to Europe.
As a result of basin fragmentation and climatic stress, the Eastern Paratethys sub-basins progressively lost their marine properties and turned into brackish-fresh water bodies fed primarily by riverine input. The shallower areas became in time emerged, obstructing connections and isolating the biota, inducing rapid adjusting or extinctions. Thus, the Paratethys harbored a highly endemic fauna (Rögl, 1999), such as dwarf whales, dolphins, seals (among mammals), as well as fish and other taxa (mollusks, ostracods, diatoms, foraminifera, algae, etc.).
Collectively the data structured and analyzed in chapter five support a model in which the Eastern Paratethys evolved as a largely (en)closed system, registering paleoenvironmental signals that are governed by interbasinal connectivity (or lack of it) and regional climate changes in the basin catchment. Acting as an important source of humidity for Western and Central Asia, the size and areal extent of the Paratethys water body is likely to have had a major impact on hydroclimate patterns in the Eurasian interior, with the cumulative fluctuations in both hydrology and surface temperature enhancing the aridity and seasonality, with different partition of moisture over the year. Our combined data suggests a decoupling of Paratethys from the global system as isolation advanced, dominated by regional tectonics and ultimately the Paratethys volume and areal extent reduction.
Sowohl die Lebenserwartung als auch die Prävalenz HIV-infizierter Patient*innen ist stetig ansteigend,aufgrund der HAART und durch verbesserte diagnostische Methoden. Nicht-AIDS-definierenden Erkrankungen sind heutzutage die führenden Todesursachen. Durch verzögerte Diagnosestellung und zurückhaltenden Therapien gynäkologischer Malignome ist die Prognose im Vergleich zur Normalbevölkerung schlechter.
In dieser retrospektiven Fall-Kontroll-Studie des Universitätsklinikums Frankfurt am Mains wurden die Therapie und das Outcome gynäkologischer Malignome von 23 HIV-infizierten Patientinnen aus den Jahren 2009-2019 mit einer Kontrollgruppe aus dem gynäkologischen Krebszentrum der Klinik Essen Mitte verglichen, um herauszufinden, inwiefern eine HIV-Infektion das Outcome der Patientinnen beeinflusst.
Das gynäkologische Malignom, dominierend das Zervixkarzinom, trat durchschnittlich ein Jahrzehnt nach der HIV-Diagnose auf. Im Unterschied zu anderen Studien, ist unser Kollektiv überwiegend hellhäutig. Ein bekannter Drogenabusus ist häufig und zusammenhängend mit weiteren Koinfektionen.
Die HIV-Erkrankung ist bei mehr als der Hälfte der Patientinnen bereits fortgeschritten, jedoch ließ sich kein Zusammenhang zwischen dem Auftreten gynäkologischer Malignome und einer CD4-Zellzahl <500 CD4-Zellen/µl nachweisen. Die antiretrovirale Therapie entsprach größtenteils nicht den aktuellen Leitlinien.
Bis auf fünf Frauen wurden alle Frauen leitliniengerecht therapiert. Eine Korrelation zwischen der Therapie und der Tumorentität, der CD4-Zellzahl, dem Alter oder dem Stadium des Malignoms konnte nicht gezeigt werden.
Insgesamt liegt die 5-Jahresüberlebensrate der Kohorte bei 74.8%. Eine nicht leitliniengerechte Therapie ist nicht direkt mit einem schlechteren Outcome verbunden, jedoch mit einem weitaus kürzeren Follow-Up-Zeitraum von durchschnittlich 0.22 Jahren im Vergleich zu 4.85 Jahren bei leitlinienkonform therapierten Patientinnen. Es liegt ein statistisch signifikanter Unterschied zwischen der Kontrollgruppe und unserer Kohorte vor, sodass angenommen werden kann, dass bei Vorliegen einer HIV-Infektion die Therapie des gynäkologischen Malignoms häufiger nicht leitliniengerecht ist.
Bislang existieren nur wenige Studien, die die Therapie und das Outcome gynäkologischer Malignome bei HIV-infizierten Patientinnen untersuchen. Die Interaktion einer ART mit antineoplastischen Medikamenten und die Anwendung von Checkpointinhibitoren und einer „targeted therapy“ sollten Gegenstand weiterer Untersuchungen sein. Dafür sollten HIV-Patientinnen in Therapiestudien inkludiert werden, sodass geeignete Leitlinien erarbeitet werden können.