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The pathological skin phenotype caused by hyperglycemia is an important indicator for the progress of diabetes mellitus. An early detection of diabetes assures an early intervention to regulate the carbohydrate metabolism. In this publication a non-invasive detection principle based on the measurement of complex scattering parameters in the millimeter-wave frequency range is presented. The measurement principle provides evidence of the applicability for the identification of different glycemic states in animal models. The method proposed here can be used to predict diabetes status in animal models and is interesting for application on humans in view of safeness of millimeter-wave radiation. Furthermore the complex scattering parameters give important information about the anatomic varieties between the analyzed skin samples of the different mice strains. In contrast to other methods, our approach is less sensitive to skin variations between animals.
The toolbox for imaging molecules is well-equipped today. Some techniques visualize the geometrical structure, others the electron density or electron orbitals. Molecules are many-body systems for which the correlation between the constituents is decisive and the spatial and the momentum distribution of one electron depends on those of the other electrons and the nuclei. Such correlations have escaped direct observation by imaging techniques so far. Here, we implement an imaging scheme which visualizes correlations between electrons by coincident detection of the reaction fragments after high energy photofragmentation. With this technique, we examine the H2 two-electron wave function in which electron–electron correlation beyond the mean-field level is prominent. We visualize the dependence of the wave function on the internuclear distance. High energy photoelectrons are shown to be a powerful tool for molecular imaging. Our study paves the way for future time resolved correlation imaging at FELs and laser based X-ray sources.
Secretins form multimeric channels across the outer membrane of Gram-negative bacteria that mediate the import or export of substrates and/or extrusion of type IV pili. The secretin complex of Thermus thermophilus is an oligomer of the 757-residue PilQ protein, essential for DNA uptake and pilus extrusion. Here, we present the cryo-EM structure of this bifunctional complex at a resolution of ~7 Å using a new reconstruction protocol. Thirteen protomers form a large periplasmic domain of six stacked rings and a secretin domain in the outer membrane. A homology model of the PilQ protein was fitted into the cryo-EM map. A crown-like structure outside the outer membrane capping the secretin was found not to be part of PilQ. Mutations in the secretin domain disrupted the crown and abolished DNA uptake, suggesting a central role of the crown in natural transformation.
Die vorliegende Arbeit hat das Ziel, Plasmen koaxialer Beschleuniger in Hinblick auf die Erzeugung hoher Elektronendichten sowie als intensive UV/VUV-Backlighterquelle zu untersuchen. Hierzu wurde zunächst die Geometrie eines einzelnen Beschleunigers charakterisiert und optimiert, um die bestmöglichen Voraussetzungen für die anschließend durchgeführten Untersuchungen zur Kollision und Kompression der erzeugten Plasmen zu schaffen.
Das Funktionsprinzip des verwendeten Plasmabeschleunigers basiert auf einer Lorentzkraft, die aus dem Stromfluss zwischen zwei koaxial angeordneten Elektroden und dem damit verbundenen Magnetfeld resultiert. Da weder Stromdichte noch Magnetfeld homogen sind, wirkt auch die Lorentzkraft inhomogen auf die Plasmaschicht. Unter Einbeziehung von Simulationen wurde der Abstand zwischen den Elektroden auf 2,5 mm gesetzt, sodass die Ausprägung dieser Inhomogenität möglichst gering gehalten wird. Um ein Pinchen des Plasmas am Ende der Elektroden zu vermeiden haben die Elektroden im Gegensatz zu Plasma Focus Devices die gleiche Länge. Der mit 130 nH niederinduktive elektrische Aufbau ermöglicht die zur Ausbildung einer Plasmaschicht erforderlichen Stromanstiegsraten in der Größenordnung von 10^11 A/s.
Die Messung der Geschwindigkeit der Plasmaschicht erfolgte mit einem Array aus sechs Dioden, die gleichzeitig die Geschwindigkeitsabnahme im Rezipienten dokumentieren. Zusätzlich wurden die Messungen mit Kameraaufnahmen verglichen. Bei einer Elektrodenlänge von 100 mm konnten mit dem verwendeten Heliumgas Schichtgeschwindigkeiten von bis zu (79,49 ± 7,98) km/s erreicht werden. Die Untersuchung von Elektroden mit 200 mm Länge verfolgte das Ziel, durch die größere Beschleunigungszeit höhere Geschwindigkeiten und kinetische Energien der austretenden Plasmaschicht zu erreichen. Es zeigte sich jedoch, dass es hierbei zur Ausbildung einer zweiten Entladung und einer damit verbundenen Abbremsung des Initialplasmas kommt. Die Untersuchungen ergaben, dass die optimale Elektrodenlänge dadurch gegeben ist, dass der Austritt des Plasmas aus dem Beschleuniger zum Zeitpunkt des ersten Stromnulldurchgangs erfolgt. Für die Berechnung der optimalen Elektrodenlänge wurde ein Skalierungsgesetz gefunden, die auf experimentellen Ergebnissen und Simulationen basiert.
Mit spektroskopische Messungen der Stark-Verbreiterung der Hβ-Linie konnte die Elektronendichte des Plasmas zeit- und ortsintegriert bestimmt werden. Die hierbei erzielte Maximaldichte von (6,83 ± 0,83) · 10^15 cm^-3 wurde bei 9 kV und 70 mbar gemessen. Die nach der Boltzmann-Methode zeit- und ortsintegriert bestimmten Elektronentemperaturen bewegt sich bei etwa 1 eV.
Nach ausreichender Charakterisierung des Einzelbeschleunigers wurde das Experiment um einen zweiten, baugleichen Plasmabeschleuniger erweitert, um die planare Kollision zweier Plasmen zu untersuchen. Die maximal gemessene Elektronendichte von n max e = (1,36 ± 0,21) · 10^16 cm^-3 bei 9 kV und 70 mbar stellt im Vergleich zum Einzelplasma eine Steigerung um einen Faktor von 2,48 dar und ist mit einer Temperaturerhöhung einhergehend. Diese Elektronendichteerhöhung lässt sich nicht durch einfaches Durchdringen der Schichten erklären. Vielmehr muss es in der Kollisionszone zu Wechselwirkungsprozesse in Form von Kompression, zur Erzeugung neuer Ladungsträger oder der Kombination aus beidem kommen.
Das Spektrum im UV/VUV-Bereich weist Linien von ab 85 nm auf. Dies stellt eine Verbesserung gegenüber dem Einzelbeschleuniger dar, bei dem die hochenergetischste Spektrallinie erst bei 97 nm gemessen wurde. In der Kollisionskonfiguration mit einem Beschleunigerabstand von 30 mm steigt die integrierte Gesamtintensität des Spektrums bis 300 nm zudem um einen Faktor von etwa 5,2.
Als Alternative zur Plasmakollision wurde die Kompression des Plasmas des Einzelbeschleunigers durch unterschiedliche Trichtergeometrien untersucht. Die untersuchten Trichter der ersten und zweiten Generation unterscheiden sich im Wesentlichen im Durchmesser der kleineren Öffnung. Dieser wurde basierend auf Simulationen von 5 mm auf 0,5 mm reduziert. Die Dichtediagnostik der ersten Trichtergeneration erfolgte hierbei über Hα-Linie, da die Verbreiterung der Hβ-Linie zu stark und daher nicht mehr anwendbar war. Die Auswertung der Halbwertsbreiten der Hα-Linie führt zu Elektronendichten in der Größenordnung von bis zu 1018 cm−3 bei Spannungen von 9 kV. Diese Steigerung um 1,5 bis 2,5 Größenordnungen im Vergleich zum Einzelbeschleuniger ist deutlich höher als das Verhältnis der Flächen des initialen Plasmas bzw. dem Ende des Trichters von etwa acht.
Der Trichter mit verringerter Öffnung wurde bei 5 kV und 5 mbar vermessen, um die mechanische Belastung durch den hohen Druck gering zu halten. Die Bestimmung der Elektronendichte erfolgte durch die Verbreiterung der Kupferlinie bei 479,4 nm nach den quadratischen Stark-Effekt. Trotz der im Vergleich zur ersten Trichtergeneration reduzierten Entladungsenergie und verringertem Druck sind die gemessenen Elektronendichten ebenfalls bei bis zu 10^18 cm^-3.
Durch die Kompression des Plasmas weist das Spektrum im UV/VUV-Bereich bereits Linien ab Wellenlängen etwa 53 nm auf, wobei es unter Berücksichtigung der Transmissionsgrenze von Helium bei 50 nm denkbar ist, dass das Plasma noch niedrigere Wellenlängen emittiert.
Aufgrund der gesammelten Ergebnisse lässt sich festhalten, dass sich die Elektronendichte sowohl durch die Kollision zweier Plasmen als auch durch die Kompression in Trichtergeometrien steigern lässt. Der Verdichtungseffekt der Trichterkompression ist hierbei um ein vielfaches höher, als bei der Plasmakollision. Dies spiegelt sich auch im UV/VUV-Spektrum wider. Beide Versuchsanordnungen eignen sich als Linienstrahler, allerdings weist das Spektrum der Trichterkompression Linien deutlich höherer Anregungszustände auf.
Die Arbeit beschäftigt sich mit der Herstellung sowie der strukturellen und magnetischen Charakterisierung von zwei Materialklassen von kupferbasierten zweidimensionalen Quanten-Spin-Systemen: Quadratische Gitter von Dimeren sowie geometrisch frustrierte Kagomé Gitter. In beiden Systemen werden Substitutionen vorgestellt die zu verbesserten Eigenschaften führen.
Ion channel gating is essential for cellular homeostasis and is tightly controlled. In some eukaryotic and most bacterial ligand-gated K+ channels, RCK domains regulate ion fluxes. Until now, a single regulatory mechanism has been proposed for all RCK-regulated channels, involving signal transduction from the RCK domain to the gating area. Here, we present an inactive ADP-bound structure of KtrAB from Vibrio alginolyticus, determined by cryo-electron microscopy, which, combined with EPR spectroscopy and molecular dynamics simulations, uncovers a novel regulatory mechanism for ligand-induced action at a distance. Exchange of activating ATP to inactivating ADP triggers short helical segments in the K+-translocating KtrB dimer to organize into two long helices that penetrate deeply into the regulatory RCK domains, thus connecting nucleotide-binding sites and ion gates. As KtrAB and its homolog TrkAH have been implicated as bacterial pathogenicity factors, the discovery of this functionally relevant inactive conformation may advance structure-guided drug development.
Im Rahmen dieser Arbeit wird darauf eingegangen, welche Anpassungen erforderlich sind, um Protonendichten vergleichbar zu bereits erzeugten Elektronendichten in Gabor-Linsen zu erhalten. Zur Vorbereitung zukünftiger Experimente werden vergleichende Simulationen zum Einschluss der Ladungsträgerdichten durchgeführt und die Strahldynamik bei der Wechselwirkung eines positiven Ionenstrahls mit einem in einer Gabor-Linse eingeschlossenen Protonenplasma untersucht. Die Ergebnisse der Strahldynamiksimulationen werden mit theoretischen Berechnungen vertieft, in dem die Brennweite einer Gabor-Linse, die mit einer beliebigen Teilchensorte gefüllt ist, berechnet und die Drift-Masse eingeführt wird.
Eine weitere analytische Betrachtung ist die Erweiterung der Teilchendynamik in der Gabor-Linse auf beliebige Anfangsbedingungen, in dem die dazugehörige Differentialgleichung entkoppelt und ganz allgemein gelöst wird. Die daraus berechneten Trajektorien der Teilchen führen zu einem besseren Verständnis, das weitere Anwendungen erschließen könnte.
Recently the Universal Linear Accelerator (UNILAC) serves as a powerful high duty factor (25%) heavy ion beam accelerator for the ambitious experiment program at GSI. Beam time availability for SHE (Super Heavy Element)-research will be decreased due to the limitation of the UNILAC providing Uranium beams with an extremely high peak current for FAIR simultaneously. To keep the GSI-SHE program competitive on a high level and even beyond, a standalone superconducting continuous wave (100% duty factor) LINAC in combination with the upgraded GSI High Charge State injector is envisaged. In preparation for this, the first LINAC section (financed by HIM and GSI) will be tested with beam in 2017, demonstrating the future experimental capabilities. Further on the construction of an extended cryo module comprising two shorter Crossbar-H cavities is foreseen to test until end of 2017. As a final R&D step towards an entire LINAC three advanced cryo modules, each comprising two CH cavities, should be built until 2019, serving for first user experiments at the Coulomb barrier.
The study of lattice gauge theories with Monte Carlo simulations is hindered by the infamous sign problem that appears under certain circumstances, in particular at non-zero chemical potential. So far, there is no universal method to overcome this problem. However, recent years brought a new class of non-perturbative Hamiltonian techniques named tensor networks, where the sign problem is absent. In previous work, we have demonstrated that this approach, in particular matrix product states in 1+1 dimensions, can be used to perform precise calculations in a lattice gauge theory, the massless and massive Schwinger model. We have computed the mass spectrum of this theory, its thermal properties and real-time dynamics. In this work, we review these results and we extend our calculations to the case of two flavours and non-zero chemical potential. We are able to reliably reproduce known analytical results for this model, thus demonstrating that tensor networks can tackle the sign problem of a lattice gauge theory at finite density
The detailed biophysical mechanisms through which transcranial magnetic stimulation (TMS) activates cortical circuits are still not fully understood. Here we present a multi-scale computational model to describe and explain the activation of different pyramidal cell types in motor cortex due to TMS. Our model determines precise electric fields based on an individual head model derived from magnetic resonance imaging and calculates how these electric fields activate morphologically detailed models of different neuron types. We predict neural activation patterns for different coil orientations consistent with experimental findings. Beyond this, our model allows us to calculate activation thresholds for individual neurons and precise initiation sites of individual action potentials on the neurons’ complex morphologies. Specifically, our model predicts that cortical layer 3 pyramidal neurons are generally easier to stimulate than layer 5 pyramidal neurons, thereby explaining the lower stimulation thresholds observed for I-waves compared to D-waves. It also shows differences in the regions of activated cortical layer 5 and layer 3 pyramidal cells depending on coil orientation. Finally, it predicts that under standard stimulation conditions, action potentials are mostly generated at the axon initial segment of cortical pyramidal cells, with a much less important activation site being the part of a layer 5 pyramidal cell axon where it crosses the boundary between grey matter and white matter. In conclusion, our computational model offers a detailed account of the mechanisms through which TMS activates different cortical pyramidal cell types, paving the way for more targeted application of TMS based on individual brain morphology in clinical and basic research settings.
Motivated by the necessary replacement of the GSI UNILAC poststripper linac, a compact and efficient linac design based on IH-type cavities has been developed. Using KONUS beam dynamics, it was possible to design a linac consisting of only five cavities that can be operated by the existing UNILAC RF amplifier structure. The transversal focusing scheme is based on magnetic quadrupole triplet lenses. The optimized design provides full transmission and low emittance growth for the design current of 15 emA U28+, accelerating the beam from 1.4 MeV/u to 11.4 MeV/u. Extensive error studies were performed to define tolerances and verify the stability of the design with respect to misalignment and injection parameters. The design provides a compact and cost effective alternative to a new Alvarez linac. With a total length of just 22.8 meters it will leave room for future energy upgrades in the UNILAC tunnel.
Relativistic jets from active galactic nuclei (AGN) often display a non-uniform structure and are, under certain conditions, susceptible to a number of instabilities. An interesting example is the development of non-axisymmetric, Rayleigh-Taylor type instabilities in the case of differentially rotating two-component jets, with the toroidal component of the magnetic field playing a key role in the development or suppression of these instabilities. We have shown that higher magnetization leads to stability against these non-axisymmetric instabilities. Using ray-casting on data from relativistic MHD simulations of two-component jets, we now investigate the effect of these instabilities on the synchrotron emission pattern from the jets. We recover many well known trends from actual observations, e.g., regarding the polarization fraction and the distribution of the position angle of the electric field, in addition to a different emitting region, depending on the stability of the jet.
Autophagy is a physiological process for the recycling and degradation of cellular materials. Forming the autophagosome from the phagophore, a cup-shaped double-membrane vesicle, is a critical step in autophagy. The origin of the cup shape of the phagophore is poorly understood. In yeast, fusion of a small number of Atg9-containing vesicles is considered a key step in autophagosome biogenesis, aided by Atg1 complexes (ULK1 in mammals) localized at the preautophagosomal structure (PAS). In particular, the S-shaped Atg17-Atg31-Atg29 subcomplex of Atg1 is critical for phagophore nucleation at the PAS. To study this process, we simulated membrane remodeling processes in the presence and absence of membrane associated Atg17. We show that at least three vesicles need to fuse to induce the phagophore shape, consistent with experimental observations. However, fusion alone is not sufficient. Interactions with 34-nm long, S-shaped Atg17 complexes are required to overcome a substantial kinetic barrier in the transition to the cup-shaped phagophore. Our finding rationalizes the recruitment of Atg17 complexes to the yeast PAS, and their unusual shape. In control simulations without Atg17, with weakly binding Atg17, or with straight instead of S-shaped Atg17, the membrane shape transition did not occur. We confirm the critical role of Atg17-membrane interactions experimentally by showing that mutations of putative membrane interaction sites result in reduction or loss of autophagic activity in yeast. Fusion of a small number of vesicles followed by Atg17-guided membrane shape-remodeling thus emerges as a viable route to phagophore formation.
The phenomenon of jet quenching provides essential information about the properties of hot and dense matter created in ultra-relativistic heavy-ion collisions. Recent results from experiments at the Large Hadron Collider (LHC) show evidence for an unexpectedly similar suppression of both light and heavy flavor jets. Furthermore, the role of radiative energy loss of heavy quarks is still under active discussion within the theoretical community. By employing the parton cascade Boltzmann Approach to Multi-Parton Scatterings (BAMPS), which numerically solves the 3+1 D Boltzmann equation both for light and heavy flavor partons, we calculate the nuclear modification factor of inclusive and b-tagged reconstructed jets in 0–10% central sLHC=2.76ATeV Pb + Pb collisions. Based on perturbative QCD cross sections we find a suppression of both light and heavy flavor jets. While the inclusive jets are slightly too strong suppressed within Bamps in comparison with data, both elastic + radiative and only elastic interactions lead to a realistic b-tagged jet suppression. To further investigate light and heavy flavor energy loss we predict the R dependence of inclusive and b-tagged jet suppression. Furthermore, we propose the medium modification of b-tagged jet shapes as an observable for discriminating between different heavy quark energy loss scenarios.
In its weak field limit, Scalar-tensor-vector gravity theory introduces a Yukawa-correction to the gravitational potential. Such a correction depends on the two parameters, α which accounts for the modification of the gravitational constant, and μ∗−1 wwhich represents the scale length on which the scalar field propagates. These parameters were found to be universal when the modified gravitational potential was used to fit the galaxy rotation curves and the mass profiles of galaxy clusters, both without Dark Matter. We test the universality of these parameters using the temperature anisotropies due to the thermal Sunyaev–Zeldovich effect. In our model the intra-cluster gas is in hydrostatic equilibrium within the modified gravitational potential well and it is described by a polytropic equation of state. We predict the thermal Sunyaev–Zeldovich temperature anisotropies produced by Coma cluster, and we compare them with those obtained using the Planck 2013 Nominal maps. In our analysis, we find α and the scale length, respectively, to be consistent and to depart from their universal values. Our analysis points out that the assumption of the universality of the Yukawa-correction to the gravitational potential is ruled out at more than 3.5σ at galaxy clusters scale, while demonstrating that such a theory of gravity is capable to fit the cluster profile if the scale dependence of the gravitational potential is restored.
The goal of heavy ion reactions at low beam energies is to explore the QCD phase diagram at high net baryon chemical potential. To relate experimental observations with a first order phase transition or a critical endpoint, dynamical approaches for the theoretical description have to be developed. In this summary of the corresponding plenary talk, the status of the dynamical modeling including the most recent advances is presented. The remaining challenges are highlighted and promising experimental measurements are pointed out.
We present a method that enables the identification and analysis of conformational Markovian transition states from atomistic or coarse-grained molecular dynamics (MD) trajectories. Our algorithm is presented by using both analytical models and examples from MD simulations of the benchmark system helix-forming peptide Ala5, and of larger, biomedically important systems: the 15-lipoxygenase-2 enzyme (15-LOX-2), the epidermal growth factor receptor (EGFR) protein, and the Mga2 fungal transcription factor. The analysis of 15-LOX-2 uses data generated exclusively from biased umbrella sampling simulations carried out at the hybrid ab initio density functional theory (DFT) quantum mechanics/molecular mechanics (QM/MM) level of theory. In all cases, our method automatically identifies the corresponding transition states and metastable conformations in a variationally optimal way, with the input of a set of relevant coordinates, by accurately reproducing the intrinsic slowest relaxation rate of each system. Our approach offers a general yet easy-to-implement analysis method that provides unique insight into the molecular mechanism and the rare but crucial (i.e., rate-limiting) transition states occurring along conformational transition paths in complex dynamical systems such as molecular trajectories.
Walter Greiner: in memoriam
(2017)
Walter Greiner (29 October 1935 - 6 October 2016) was a German theoretical physicist. His scientific research interests include the thematic areas of atomic physics, heavy ion physics, nuclear physics, elementary particle physics (particularly quantum electrodynamics and quantum chromodynamics). He is most known in Germany for his series of books in theoretical physics, but he is also well known around the world. Greiner was born on October 29, 1935, in Neuenbau, Sonnenberg, Germany. He studied physics at the University of Frankfurt (Goethe University in Frankfurt Am Main), receiving in this institution a BSci in physics and a Master’s degree in 1960 with a thesis on plasma-reactors, and a PhD in 1961 at the University of Freiburg under Hans Marshal, with a thesis on the nuclear polarization in μμ-mesic atoms. During the period of 1962 to 1964 he was assistant professor at the University of Maryland, followed by a position as research associate at the University of Freiburg, in 1964. Starting in 1965, he became a full professor at the Institute for Theoretical Physics at Goethe University until 2003. Greiner has been a visiting professor to many universities and laboratories, including Florida State University, the University of Virginia, the University of California, the University of Melbourne, Vanderbilt University, Yale University, Oak Ridge National Laboratory and Los Alamos National Laboratory. In 2003, with Wolf Singer, he was the founding Director of the Frankfurt Institute for Advanced Studies (FIAS), and gave lectures and seminars in elementary particle physics. He died on October 6, 2016 at the age of 80.
Walter Greiner was an excellent teacher, researcher, friend. And he was a great supporter of the series of events known by the acronyms IWARA - International Workshop on Astronomy and Relativistic Astrophysics, STARS - Caribbean Symposium on Cosmology, Gravitation, Nuclear and Astroparticle Physics, and SMFNS - International Symposium on Strong Electromagnetic Fields and Neutron Stars. Walter Greiner left us. But his memory will remain always alive among us who have had the privilege of knowing him and enjoy his wisdom and joy of living.
The KER for electron capture of vibrational cooled HeH+ and H3 + ions at 20 keV from residual gas atoms has been measured in the Frankfurt Low Energy Storage Ring (FLSR). At a vacuum in the order of few 10-11 mbar, this residual gas consists to 99% of H2 molecules. For the identification of the recoil products of this reaction, a recoil spectrometer (with an MCP-detector with position and time sensitive read out) was installed at one of the focus points (IP) in the FLSR. The planned extension of this set up by a gas target to a full COLTRIMS reaction microscope will be discussed.