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Phosphorylation of the sarcoplasmic reticulum Ca(2+)-ATPase (SERCA1a) was studied with time-resolved Fourier transform infrared spectroscopy. ATP and ATP analogs (ITP, 2'- and 3'-dATP) were used to study the effect of the adenine ring and the ribose hydroxyl groups on ATPase phosphorylation. All modifications of ATP altered conformational changes and phosphorylation kinetics. The differences compared with ATP increased in the following order: 3'-dATP > ITP > 2'-dATP. Enzyme phosphorylation with ITP results in larger absorbance changes in the amide I region, indicating larger conformational changes of the Ca(2+)-ATPase. The respective absorbance changes obtained with 3'-dATP are significantly different from the others with different band positions and amplitudes in the amide I region, indicating different conformational changes of the protein backbone. ATPase phosphorylation with 3'-dATP is also much ( approximately 30 times) slower than with ATP. Our results indicate that modifications to functional groups of ATP (the ribose 2'- and 3'-OH and the amino group in the adenine ring) affect gamma-phosphate transfer to the phosphorylation site of the Ca(2+)-ATPase by changing the extent of conformational change and the phosphorylation rate. ADP binding to the ADP-sensitive phosphoenzyme (Ca(2)E1P) stabilizes the closed conformation of Ca(2)E1P.
In high-energy nuclear collisions, heavy quark potential at finite temperature controls the quarkonium suppression. Including the relaxation of the medium induced by the relative velocity between quarkonia and the deconfined expanding matter, the Debye screening is reduced and the quarkonium dissociation takes place at a higher temperature. As a consequence of the velocity-dependent dissociation temperature, the quarkonium suppression at high transverse momentum is significantly weakened in high-energy nuclear collisions at RHIC and LHC.
The nuclear charge form factgr from the high-energy elastic electron scattering on 6Li has been calculated from the modified independent-particle shell model (IPSM) wave function. The usual harmonic oscillator type IPSM wave function has been modified by the inclusion of a nucleon-nucleon correlation function which involves extra-core nucleons only. The technique is extremely simple and provides an excellent agreement with the experimental data.
HADES is a multi-purpose charged-particle detector operated at the SIS18 synchrotron located at the GSI Helmholtz Center for Heavy Ion Research in Darmstadt, Germany. The provided ion beam energies of 1-2 A GeV are the lowest of all currently running heavy-ion experiments and result in the highest baryo-chemical potentials at freeze-out in case of Au+Au collisions. At this Quark Matter conference we presented results from Au+Au collisions at sNN=2.4GeV. The created system exhibits a very clear hierarchy in hadron yields, with about 100 protons, 10 pions, 10−2 kaons and 10−4 antikaons per event. The HADES program focuses on four main observables: (subthreshold) strangeness production, particle flow and its anisotropies, virtual photon emission and net-proton number fluctuations.
The High Acceptance DiElectron Spectrometer HADES [1] is installed at the Helmholtzzentrum für Schwerionenforschung (GSI) accelerator facility in Darmstadt. It investigates dielectron emission and strangeness production in the 1-3 AGeV regime. A recent experiment series focusses on medium-modifications of light vector mesons in cold nuclear matter. In two runs, p+p and p+Nb reactions were investigated at 3.5 GeV beam energy; about 9·109 events have been registered. In contrast to other experiments the high acceptance of the HADES allows for a detailed analysis of electron pairs with low momenta relative to nuclear matter, where modifications of the spectral functions of vector mesons are predicted to be most prominent. Comparing these low momentum electron pairs to the reference measurement in the elementary p+p reaction, we find in fact a strong modification of the spectral distribution in the whole vector meson region.
The knowledge of baryonic resonance properties and production cross sections plays an important role for the extraction and understanding of medium modifications of mesons in hot and/or dense nuclear matter. We present and discuss systematics on dielectron and strangeness production obtained with HADES on p+p, p+A and A+A collisions in the few GeV energy regime with respect to these resonances.
The properties of nuclear matter are studied in the framework of quantum hadrodynamics. Assuming an ω-meson field, periodic in space, a self-consistent set of equations is derived in the mean-field approximation for the description of nucleons interacting via σ-meson and ω-meson fields. Solutions of these self-consistent equations have been found: The baryon density is constant in space, however, the baryon current density is periodic. This high density phase of nuclear matter can be produced by anisotropic external pressure, occurring, e.g., in relativistic heavy ion reactions. The self-consistent fields developing beyond the instability limit have a special screw symmetry. In the presence of such an ω field, the energy spectrum of the relativistic nucleons exhibits allowed and forbidden bands, similar to the energy spectrum of the electrons in solids.
In this work we outline the general analytic characteristics satisfied by scalar correlation functions at finite temperature in local quantum field theory. We demonstrate that the locality of the fields in particular imposes significant constraints on the spectral structure of the theory, and that this enables the nonperturbative effects experienced by thermal particle states to be directly calculated from Euclidean correlation functions, avoiding the inverse problem.
Spectral functions encode a wealth of information about the dynamics of any given system, and the determination of their non-perturbative characteristics is a long-standing problem in quantum field theory. Whilst numerical simulations of lattice QCD provide ample data for various Euclidean correlation functions, the inversion required to extract spectral functions is an ill-posed problem. In this work, we pursue previously established constraints imposed by field locality at finite temperature T, namely that spectral functions possess a non-perturbative representation which generalises the well-known Källén-Lehmann spectral form to T > 0. Using this representation, we analyse lattice QCD data of the spatial pseudo-scalar correlator in the temperature range 220–960 MeV, and obtain an analytic expression for the corresponding spectral function, with parameters fixed by the data. From the structure of this spectral function we find evidence for the existence of a distinct pion state above the chiral pseudo-critical temperature Tpc, and contributions from its first excitation, which gradually melt as the temperature increases. As a non-trivial test, we find that the extracted spectral function reproduces the corresponding temporal lattice correlator data for T = 220 MeV.
In quantum field theories at finite temperature spectral functions describe how particle systems behave in the presence of a thermal medium. Although data from lattice simulations can in principle be used to determine spectral function characteristics, existing methods rely on the extraction of these quantities from temporal correlators, which requires one to circumvent an illposed inverse problem. In these proceedings we report on a recent approach that instead utilises the non-perturbative constraints imposed by field locality to extract spectral function information directly from spatial correlators. In particular, we focus on the application of this approach to lattice QCD data of the spatial pseudo-scalar meson correlator in the temperature range 220−960 MeV, and outline why this data supports the conclusion that there exists a distinct pion state above the chiral pseudo-critical temperature Tpc.
A well-known difficulty of perturbative approaches to quantum field theory at finite temperature is the necessity to address theoretical constraints that are not present in the vacuum theory. In this work, we use lattice simulations of scalar correlation functions in massive ϕ4 theory to analyse the extent to which these constraints affect the perturbative predictions. We find that the standard perturbative predictions deteriorate even in the absence of infrared divergences at relatively low temperatures, and that this is directly connected to the analytic structure of the propagators used in the expansion. This suggests that the incorporation of non-perturbative thermal effects in the propagators is essential for a consistent perturbative formulation of scalar quantum field theories at finite temperature. By utilising the spectral constraints imposed on finite-temperature correlation functions, we explore how these effects manifest themselves in the lattice data, and discuss why the presence of distinct thermoparticle excitations provides a potential resolution to these issues.
In this work we apply a local quantum field theory (QFT) approach in order to analyze the connection between real-time observables and Euclidean thermal correlation functions. In particular, using data generated from the functional renormalization group (FRG) in the quark-meson model, we demonstrate that in-medium effects can be directly extracted from the spatial momentum dependence of the Euclidean propagators, in contrast to conventional approaches, which rely on the reconstruction from different Matsubara frequencies. As an application, we determine the analytic features that arise from the discrete spectral contribution to the pion correlation function, and calculate the nonperturbative shear viscosity arising from these states.
In local scalar quantum field theories at finite temperature correlation functions are known to satisfy certain nonperturbative constraints, which for two-point functions in particular implies the existence of a generalization of the standard Källén-Lehmann representation. In this work, we use these constraints in order to derive a spectral representation for the shear viscosity arising from the thermal asymptotic states, η0. As an example, we calculate η0 in ϕ4 theory, establishing its leading behavior in the small and large coupling regimes.
We present a systematic study on the influence of spatial correlations between the proton constituents, in our case gluonic hot spots, their size and their number on the symmetric cumulant SC(2,3), at the eccentricity level, within a Monte Carlo Glauber framework [J.L. Albacete, H. Petersen, A. Soto-Ontoso, Symmetric cumulants as a probe of the proton substructure at LHC energies, Phys. Lett. B778 (2018) 128–136. arXiv:1707.05592, doi:10.1016/j.physletb.2018.01.011]. When modeling the proton as composed by 3 gluonic hot spots, the most common assumption in the literature, we find that the inclusion of spatial correlations is indispensable to reproduce the negative sign of SC(2,3) in the highest centrality bins as dictated by data. Further, the subtle interplay between the different scales of the problem is discussed. To conclude, the possibility of feeding a 2+1D viscous hydrodynamic simulation with our entropy profiles is exposed.
We present a systematic study of the normalized symmetric cumulants, NSC(n,m), at the eccentricity level in proton-proton interactions at within a wounded hot spot approach. We focus our attention on the influence of spatial correlations between the proton constituents, in our case gluonic hot spots, on this observable. We notice that the presence of short-range repulsive correlations between the hot spots systematically decreases the values of and in mid- to ultra-central collisions while increases them in peripheral interactions. In the case of we find that, as suggested by data, an anti-correlation of and in ultra-central collisions, i.e. , is possible within the correlated scenario while it never occurs without correlations when the number of gluonic hot spots is set to three. We attribute this fact to the decisive role of correlations on enlarging the probability of interaction topologies that reduce the value of and, eventually, make it negative. Further, we explore the dependence of our conclusions on the number of hot spots, the values of the hot spot radius and the repulsive core distance. Our results add evidence to the idea that considering spatial correlations between the subnucleonic degrees of freedom of the proton may have a strong impact on the initial state properties of proton-proton interactions [1].
In this work, largely based on [J. L. Albacete, A. Soto-Ontoso, Hot spots and the hollowness of proton-proton interactions at high energies, arXiv:1605.09176; J. L. Albacete, H. Petersen, A. Soto-Ontoso, Correlated wounded hot spots in proton-proton interactions, arXiv:1612.06274], we present a novel initial state geometry for proton-proton interactions. We rely on gluonic hot spots as effective degrees of freedom whose transverse positions inside the proton are correlated. We explore the impact of these non-trivial spatial correlations on the eccentricity and triangularity of the system following a Monte Carlo Glauber approach.
Substantial progress in the field of neuroscience has been made from anaesthetized preparations. Ketamine is one of the most used drugs in electrophysiology studies, but how ketamine affects neuronal responses is poorly understood. Here, we used in vivo electrophysiology and computational modelling to study how the auditory cortex of bats responds to vocalisations under anaesthesia and in wakefulness. In wakefulness, acoustic context increases neuronal discrimination of natural sounds. Neuron models predicted that ketamine affects the contextual discrimination of sounds regardless of the type of context heard by the animals (echolocation or communication sounds). However, empirical evidence showed that the predicted effect of ketamine occurs only if the acoustic context consists of low-pitched sounds (e.g., communication calls in bats). Using the empirical data, we updated the naïve models to show that differential effects of ketamine on cortical responses can be mediated by unbalanced changes in the firing rate of feedforward inputs to cortex, and changes in the depression of thalamo-cortical synaptic receptors. Combined, our findings obtained in vivo and in silico reveal the effects and mechanisms by which ketamine affects cortical responses to vocalisations.
Vibrational energy transfer (VET) is emerging as key mechanism for protein functions, possibly playing an important role for energy dissipation, allosteric regulation, and enzyme catalysis. A deep understanding of VET is required to elucidate its role in such processes. Ultrafast VIS-pump/IR-probe spectroscopy can detect pathways of VET in proteins. However, the requirement of having a VET donor and a VET sensor installed simultaneously limits the possible target proteins and sites; to increase their number we compare six IR labels regarding their utility as VET sensors. We compare these labels in terms of their FTIR, and VET signature in VET donor-sensor dipeptides in different solvents. Furthermore, we incorporated four of these labels in PDZ3 to assess their capabilities in more complex systems. Our results show that different IR labels can be used interchangeably, allowing for free choice of the right label depending on the system under investigation and the methods available.
The decay properties of the Pygmy Dipole Resonance (PDR) have been investigated in the semi-magic N=82 nucleus 140Ce using a novel combination of nuclear resonance fluorescence and γ–γ coincidence techniques. Branching ratios for transitions to low-lying excited states are determined in a direct and model-independent way both for individual excited states and for excitation energy intervals. Comparison of the experimental results to microscopic calculations in the quasi-particle phonon model exhibits an excellent agreement, supporting the observation that the Pygmy Dipole Resonance couples to the ground state as well as to low-lying excited states. A 10% mixing of the PDR and the [21+ x PDR] is extracted.