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Poster presentation: Background In the past years, once-daily (QD) dosing of antiretroviral combination therapy has become an increasingly available treatment option for HIV-1+ patients. Methods Open label study in which HIV-1+ patients treated with SAQ/RTV (1000/100 mg BID) and two NRTIs with HIV-RNA-PCR < 50 copies/ml were switched to SAQ/RTV(2000/100 mg QD) with unchanged NRTI-backbone. CD4-cells, HIV-RNA-PCR, SAQ and RTV drug-levels and metabolic parameters were compared. Summary of results 17 patients (15 male, 42 years), median CD4 456 ± 139/micro l were included so far. The median follow-up time is 4 months. The HIV-RNA-PCR remained <50 copies/ml for all patients. Fasting metabolic parameters remained unchanged. The SAQ AUC 0–12 h were significantly higher when given QD vs. BID (median 29,400 vs. 18,500 ng*h/ml; p = 0.009), whereas the Cmin, Cmax and AUC was lower for RTV when given QD vs. BID (7,400 vs. 11,700 ng*h/ml; p = 0.02). Conclusion In this ongoing study SAQ/RTV (2000/100 mg QD) was well tolerated and demonstrated higher SAQ and lower RTV drug levels as compared to the BID dosing schedule. (Table 1 and Figure 1.)
German linking elements are sometimes classified as inflectional affixes, sometimes as derivational affixes, and in any case as morphological units with at least seven realisations (e.g. -s-, -es-, -(e)n-, -e-). This article seeks to show that linking elements are hybrid elements situated between morphology and phonology. On the one hand, they have a clear morphological status since they occur only within compounds (and before a very small set of suffixes) and support the listener in decoding them. On the other hand, they also have to be analysed on the phonological level, as will be shown in this article. Thus, they are marginal morphological units on the pathway to phonology (including prosodics). Although some alloforms can sometimes be considered former inflectional endings and in some cases even continue to demonstrate some inflectional behaviour (such as relatedness to gender and inflection class), they are on their way to becoming markers of ill-formed phonological words. In fact, linking elements, above all the linking -s-, which is extremely productive, help the listener decode compounds containing a bad phonological word as their first constituent, such as Geburt+s+tag ‘birthday’ or Religion+s+unterricht ‘religious education’. By marking the end of a first constituent that differs from an unmarked monopedal phonological word, the linking element aids the listener in correctly decoding and analysing the compound. German compounds are known for their length and complexity, both of which have increased over time—along with the occurrence of linking elements, especially -s-. Thus, a profound instance of language change can be observed in contemporary German, one indicating its typological shift from syllable language to word language.
Much of the recent philosophical literature about distributive justice and equality in the domestic context has been dominated by a family of theories now often called ‘luck egalitarianism’, according to which it is unfair if some people are worse off than others through no choice or fault of their own. This principle has also found its way into the literature about global justice. This paper explores some difficulties that this principle faces: it is largely insensitive to the causes of global inequality, and it is so demanding that it can only give rise to weak moral claims. I go on to argue that a) understanding justice claims as merely weak claims rests on an implausible and impractical concept of justice, and b) using the global luck egalitarian argument in practical discourse is likely to lead to misunderstanding, and to be counterproductive if the aim is to tackle global inequality. While these considerations do not suffice to make a conclusive case against the luck egalitarian principle, they should be acknowledged by global luck egalitarians – as some similar problems have indeed been by domestic luck egalitarians – and need to be addressed.
Precursor protein translocation across the outer chloroplast membrane depends on the action of the Toc complex, containing GTPases as recognizing receptor components. The G domains of the GTPases are known to dimerize. In the dimeric conformation an arginine contacts the phosphate moieties of bound nucleotide in trans. Kinetic studies suggested that the arginine in itself does not act as an arginine finger of a reciprocal GTPase-activating protein (GAP). Here we investigate the specific function of the residue in two GTPase homologues. Arginine to alanine replacement variants have significantly reduced affinities for dimerization compared with wild-type GTPases. The amino acid exchange does not impact on the overall fold and nucleotide binding, as seen in the monomeric x-ray crystallographic structure of the Arabidopsis Toc33 arginine-alanine replacement variant at 2.0A. We probed the catalytic center with the transition state analogue GDP/AlF(x) using NMR and analytical ultracentrifugation. AlF(x) binding depends on the arginine, suggesting the residue can play a role in catalysis despite the non-GAP nature of the homodimer. Two non-exclusive functional models are discussed: 1) the coGAP hypothesis, in which an additional factor activates the GTPase in homodimeric form; and 2) the switch hypothesis, in which a protein, presumably the large Toc159 GTPase, exchanges with one of the homodimeric subunits, leading to activation.
In the late seventies, Bernard Comrie was one of the first linguists to explore the effects of the referential hierarchy (RH) on the distribution of grammatical relations (GRs). The referential hierarchy is also known in the literature as the animacy, empathy or indexibability hierarchy and ranks speech act participants (i.e. first and second person) above third persons, animates above inanimates, or more topical referents above less topical referents. Depending on the language, the hierarchy is sometimes extended by analogy to rankings of possessors above possessees, singulars above plurals, or other notions. In his 1981 textbook, Comrie analyzed RH effects as explaining (a) differential case (or adposition) marking of transitive subject ("A") noun phrases in low RH positions (e.g. inanimate or third person) and of object ("P") noun phrases in high RH positions (e.g. animate or first or second person), and (b) hierarchical verb agreement coupled with a direct vs. inverse distinction, as in Algonquian (Comrie 1981: Chapter 6).
The research presented in this thesis characterizes U2AF homology motifs (UHM) and their interactions with UHM ligand motifs (ULM) in the context of splicing regulation. UHM domains are a subgroup of RNA recognition motifs (RRM) originally discovered in the proteins U2AF65 and U2AF35. Whereas canonical RRMs are usually involved in binding of RNA, UHM domains bind tryptophan containing linear protein motifs (ULM) instead. In the first article, we analyze the complex network of interactions between splicing factors and RNA that initiate the assembly of the spliceosome at the 3´ splice site of an intron. The protein U2AF65 binds a pyrimidine-rich element in introns and recruits U2snRNP by binding its protein component SF3b155. My contribution was to define the binding site of the protein U2AF65 to the intrinsically unstructured N-terminus of the scaffolding protein SF3b155. I could show that the UHM domain of U2AF65 recognizes a ULM in SF3b155, and that this binding site is not overlapping with the binding sites of other splicing factors, like p14, to SF3b155. As the U2AF65-UHM:SF3b155-ULM interaction is mutually exclusive with an interaction between U2AF65-UHM and a ULM in the splicing factor SF1, which was reported to initially recognize the branch point sequence, my results provide the molecular details on how SF3b155 replaces SF1 during spliceosomal reorganizations. In the second article, we show that overexpression of the UHM domain of the splicing factor SPF45 induces exon 6 skipping in the pre-mRNA of Fas (CD95/APO-1). I provide evidence for in vitro binding of SPF45-UHM to ULM sequences in the splicing factors U2AF65, SF1, and SF3b155. I crystallized free and SF3b155-bound SPF45 UHM and solved both structures by X-ray crystallography. The analysis of the complex interface and sequence differences in the ULMs allowed me to design mutations of SPF45-UHM, which selectively inhibit binding to distinct ULMs. After assessing the ULM binding properties in vitro, we could show that the activity of SPF45-UHM in influencing the splicing pattern of Fas relies on interactions with SF3b155 and/or SF1, but that an interaction with U2AF65 is dispensable. A mechanism for the activity of SPF45-UHM could thus be engaging in ULM interactions and thus interfering with the network of interactions that initiate the assembly of the spliceosome at the 3´splice site, as described above. In the third article, we describe an unusual flexible homodimerization mode of the UHM in the splicing factor Puf60, which enables simultaneous interactions with ULM sequences on other splicing factors. I could show that the NMR relaxation properties of Puf60-UHM are inconsistent with a model of a rigid dimer, but rather indicate a dimerization via a flexible linker. I identified a flexible loop in the peptide backbone of Puf60-UHM, and showed that mutiation of acidic residues in this loop impairs the dimerization. To analyze the dimerization interface in further detail, I solved the structure of Puf60-UHM by X-ray crystallography. The acidic residues in the flexible loop of one UHM dimer subunit mediate the dimerization by contacting basic residues on the β-sheet surface of the other dimer subunit. Differences in the four dimer interfaces observed for the eight molecules in the asymmetric unit of the crystal support the model of an undescribed, flexible mode of dimerization, and thus complement the NMR relaxation data. Furthermore, I could show that the Puf60-UHM dimer and U2AF65-UHM contact different ULM sequences on the SF3b155 N-terminus in vitro, thus providing a possible explanation for the mutual cooperative activation of Puf60 and U2AF65 in splicing assays described in the literature. The fourth article is a review about recent research on the recognition of DNA double strand breaks (DSB) by covalent histone modifications. The p53 binding protein 1 (53BP1) is a DSB sensor and a checkpoint protein for mitosis. Recent crystallographic evidence indicates that 53BP1 recognizes DSB sites by binding histone H4 dimetylated at lysine 20 (H4-K20). We provide a comprehensive overview of the atomic resolution structures that revealed how proteins can specifically recognize histone tail modifications, especially methylated lysines, to read the information stored in what is called the histone code.
On the role of syntactic locality in morphological processes : the case of (Greek) derived nominals
(2008)
The paper is structured as follows. In section 2, I briefly summarize the facts on English and Greek nominalizations. In section 3, I discuss English nominal derivation in some detail. In section 4, I turn to the question of licensing of AS in nominals. In section 5, I turn to the issue of the optionality of licensing of AS in the nominal system.
This paper investigates the relation between TT-MCTAG, a formalism used in computational linguistics, and RCG. RCGs are known to describe exactly the class PTIME; simple RCG even have been shown to be equivalent to linear context-free rewriting systems, i.e., to be mildly context-sensitive. TT-MCTAG has been proposed to model free word order languages. In general, it is NP-complete. In this paper, we will put an additional limitation on the derivations licensed in TT-MCTAG. We show that TT-MCTAG with this additional limitation can be transformed into equivalent simple RCGs. This result is interesting for theoretical reasons (since it shows that TT-MCTAG in this limited form is mildly context-sensitive) and, furthermore, even for practical reasons: We use the proposed transformation from TT-MCTAG to RCG in an actual parser that we have implemented.
The Kaiserchronik is generically puzzling. In essence it is a spiritual world chronicle, but it lacks the usual historiographical systematisations of its theological content. However it does have three disputations, an unusual feature in a chronicle which has to date not been adequately explained. This essay argues, on the basis of comparisons with works in other literary forms, that these passages function as key expressions of the controlling idea of the entire work, namely the progress of the Gospel from the heathen to the Christian Empire, and that they are strategically located within the chronicle at the turning points in the success of Christian mission.
This paper deals with the variable position of adjectives in the Romanian DP. As all other Romance languages, Romanian allows for adjectives to appear in both prenominal and post-nominal position. In addition, however, Romanian has a third pattern: the so-called cel construction, in which the adjective in the post-nominal position is preceded by a determiner-like element, cel. This pattern is superficially similar to Determiner Spreading in Greek. In this paper we contrast the cel construction to Greek DS and discuss the similarities and differences between the two. We then present an analysis of cel as involving an appositive specification clause, building on de Vries (2002). We argue that the same structure is also involved in the context of nominal ellipsis, the second environment in which cel is found.
By translocating proteasomal degradation products into the endoplasmic reticulum (ER) for loading of major histocompatibility complex (MHC) class I molecules, the ATP binding cassette (ABC) transporter associated with antigen processing (TAP) plays a pivotal role in the adaptive immunity against infected or malignantly transformed cells. A key question regarding the transport mechanism is how the inter-domain communication and conformational dynamics of the TAP complex are connected during the peptide transport. To identify residues involved in this processes, we evolved a Trojan horse strategy in which a small artificial protease is inserted into antigenic epitopes. After binding, the TAP backbone in contact is cleaved, allowing the peptide sensor site to be mapped by mass spectrometry. Within this study, the peptide sensor and transmission interface have been identified. This region aligns with the cytosolic loop 1 (CL1) of Sav1866 and MsbA. Based on a number of experimental data and the homology to the bacterial ABC exporter Sav1866, we constructed a 3D structural model of the core TAP complex. According to this model, the CL1 and CL2 of TAP1 are extended cytosolic loops connecting the transmembrane helices (TMH) 2 and 3, and TMH4 and 5 respectively, and contact both nucleotide binding domains (NBDs) of the opposite subunit. In contrast to exporters, the cytosolic loop (named L-loop) of BtuCD importer is much shorter, and contacts only one NBD. The data confirm that the CL1 of TAP1 functions as signal transducer in ABC exporters, because it does not interfere with substrate binding but with substrate transport. The peptide contact site identified herein is restructured during the ATP hydrolysis cycle. Importantly, TAP showed a structural change trapped in the ATP hydrolysis transition state, because direct contact between peptide and CL1 is abolished. By cysteine scanning, the most conserved residues within CL1 were identified, which disrupted the tight coupling between peptide binding and transport. Together with Val-288, these residues are essential in sensing the bound peptide and inter-domain signal transmission. To characterize the molecular architecture of CL1, a convenient and minimally perturbing approach was used, which combined cysteine substitution in the CL1 region and determination of accessibility to thiol specific compounds with different properties. These studies revealed that the N-terminal region of CL1 has a good accessibility for hydrophilic (iodoacetamidofluorescein, IAF) and amphiphilic probes (BODIPY maleimide, BM), whereas the C-terminal region is accessible for hydrophobic probe (coumarin maleimide, CM). Kinetic studies of fluorescence labeling suggest that this region displayed a different accessibility to probes when the protein undergoes distinct conformations (e. g. nucleotide free state), thereby reflecting conformational transitions. Fluorescence labeling with BM induces a lost of peptide transport, whereas the peptide binding remains unaffected. These results indicate that covalent modifications of the CL1 residues influenced the inter-domain communication between transmembrane domain (TMD) and NBD. The X-loop is a recently discovered motif in the NBD of ABC exporters, which stays in close contact to the CLs. Moreover, because the X-loop precedes the ABC signature motif, it probably responds to ATP binding and hydrolysis and may transmit conformational changes to the CLs. By substitution of the highly conserved Glu-602 of TAP2 with residues that have different chemical properties, it was shown for the first time that the X-loop is a functional important element, which plays an key role in coupling substrate binding to downstream events in the transport cycle. We further verified domain swapping in the TAP complex by cysteine cross-linking. The TAP complex can be reversibly arrested either in a binding or translocation incompetent state by cross-linking of the X-loop to CL1 or CL2, respectively. These results resolve the structural arrangement of the transmission interface and point to different functions of the cytosolic loops in substrate recognition, signaling and transport.
We argue for incorporating the financial economics of market microstructure into the financial econometrics of asset return volatility estimation. In particular, we use market microstructure theory to derive the cross-correlation function between latent returns and market microstructure noise, which feature prominently in the recent volatility literature. The cross-correlation at zero displacement is typically negative, and cross-correlations at nonzero displacements are positive and decay geometrically. If market makers are sufficiently risk averse, however, the cross-correlation pattern is inverted. Our results are useful for assessing the validity of the frequently-assumed independence of latent price and microstructure noise, for explaining observed cross-correlation patterns, for predicting as-yet undiscovered patterns, and for making informed conjectures as to improved volatility estimation methods.
In this paper it is argued that several typologically unrelated languages share the tendency to avoid voiced sibilant affricates. This tendency is explained by appealing to the phonetic properties of the sounds, and in particular to their aerodynamic characteristics. On the basis of experimental evidence it is shown that conflicting air pressure requirements for maintaining voicing and frication are responsible for the avoidance of voiced affricates. In particular, the air pressure released from the stop phase of the affricate is too high to maintain voicing which in consequence leads to a devoicing of the frication part.
In this paper it is argued that several typologically unrelated languages share the tendency to avoid voiced sibilant affricates. This tendency is explained by appealing to the phonetic properties of the sounds, and in particular to their aerodynamic characteristics. On the basis of experimental evidence it is shown that conflicting air pressure requirements for maintaining voicing and frication are responsible for the avoidance of voiced affricates. In particular, the air pressure released from the stop phase of the affricate is too high to maintain voicing which in consequence leads to a devoicing of the frication part.
Various concurrency primitives have been added to sequential programming languages, in order to turn them concurrent. Prominent examples are concurrent buffers for Haskell, channels in Concurrent ML, joins in JoCaml, and handled futures in Alice ML. Even though one might conjecture that all these primitives provide the same expressiveness, proving this equivalence is an open challenge in the area of program semantics. In this paper, we establish a first instance of this conjecture. We show that concurrent buffers can be encoded in the lambda calculus with futures underlying Alice ML. Our correctness proof results from a systematic method, based on observational semantics with respect to may and must convergence.
This paper proves several generic variants of context lemmas and thus contributes to improving the tools for observational semantics of deterministic and non-deterministic higher-order calculi that use a small-step reduction semantics. The generic (sharing) context lemmas are provided for may- as well as two variants of must-convergence, which hold in a broad class of extended process- and extended lambda calculi, if the calculi satisfy certain natural conditions. As a guide-line, the proofs of the context lemmas are valid in call-by-need calculi, in callby-value calculi if substitution is restricted to variable-by-variable and in process calculi like variants of the π-calculus. For calculi employing beta-reduction using a call-by-name or call-by-value strategy or similar reduction rules, some iu-variants of ciu-theorems are obtained from our context lemmas. Our results reestablish several context lemmas already proved in the literature, and also provide some new context lemmas as well as some new variants of the ciu-theorem. To make the results widely applicable, we use a higher-order abstract syntax that allows untyped calculi as well as certain simple typing schemes. The approach may lead to a unifying view of higher-order calculi, reduction, and observational equality.
We provide the first non-trivial result on dynamic breadth-first search (BFS) in external-memory: For general sparse undirected graphs of initially $n$ nodes and O(n) edges and monotone update sequences of either $\Theta(n)$ edge insertions or $\Theta(n)$ edge deletions, we prove an amortized high-probability bound of $O(n/B^{2/3}+\sort(n)\cdot \log B)$ I/Os per update. In contrast, the currently best approach for static BFS on sparse undirected graphs requires $\Omega(n/B^{1/2}+\sort(n))$ I/Os. 1998 ACM Subject Classification: F.2.2. Key words and phrases: External Memory, Dynamic Graph Algorithms, BFS, Randomization.
In the article, a travel sketch of Danish playwright Kaj Munk (1898 – 1944) is analytically considered. The analysis of this text allows drawing at least three conclusions: 1. Explicit motive of seasickness, figuring here as antithetic modification of implicite present free-standing posture motive, symbolizes idea of disintegrating personality. 2. Such a symbolism is deeply rooted in that of Danish identity. 3. From literary styles and trends history point of view, the sketch appears to be typical of that line in expressionism, which continues tradition of symbolism as artistic and literary trend of late 19th century.
Agglutinated foraminiferal assemblages from the Oligocene section of an exploration well drilled in the distal part of the Congo Fan are fully documented and interpreted for palaeoenvironment. A total of 65 ditch cutting samples were analysed at 10 m intervals, from 3630 to 4270 m below rotary table. An average of 170 specimens were extracted per sample, with over 100 species being documented and described using SEM and light photography. The results reveal the most taxonomically diverse deepsea Oligocene fauna yet described. Six assemblages have been defined and analysed with Correspondence and 'Morphogroup' Analysis. These are 1. Nothia robusta / Reticulophragmium Assemblage (4110-4270 m), 2. Nothia robusta / Scherochorella congoensis / Discammilloides sp. 1 Assemblage (4000-4100 m), 3. High diversity Reticulophragmium Assemblage (3870-3990 m), 4. Portatrochammina profunda Assemblage (3790-3860 m), 5. Nothia latissima Assemblage (3730-3780 m) and 6. Low abundance Assemblage (3630-3720 m). Palaeobathymetric estimates range from middle -lower bathyal based on comparison with living taxa and morphogroup distributions. These results extend the known stratigraphic range (last occurrences) of Reticulophragmium amp/eetens into the Oligocene in the Atlantic, and possibly also Paratrochamminoides gorayskii, Paratrochamminoides olszewskii, Trochamminoides aff. proteus, Trochamminoides subcoronatus, Haplophragmoides horridus and Haplophragmoides walteri, although reworking is documented with these species. Results also extend the known first occurrences of Recurvoides azuaensis, Spiropsammina primula, Cyclammina aff. orbicularis, Discamminoides sp. and Glaphyrammina americana into the Oligocene. Large scale variations within faunas are largely assigned to documente d variations in sand content, where higher proportions of sand generally coincide with reduced diversity and abundance along with a dominance of opportunistic species such as Nothia robusta, Nothia latissima and Ammodiscus latus. A major excursion in the infaunal morpho group, suspension-feeding morpho group and diversity and abundance within Assemblage 2 is termed the 'Scherochorella Event', and does not correlate with an increase in sand. This fauna is thought to be the result of lower oxygen conditions allowing the dominance of the low oxygen morphotype Scherochorella congoensis and the opportunistic species Nothia robusta. Deep-water circulation in the Atlantic at this time is generally thought to have been strong, and this event suggests that there may have been a temporary expansion of the oxygen minimum zone during the Late Oligocene, coinciding with increased benthic 8180 values, global cooling, and increased upwelling associated with a stronger polar front. The otherwise high diversity of the fauna in the well supports the interpretation of well-oxygenated conditions.
Aramaic is not among the oldest Semitic languages in a strictly chronological sense, but among those languages which are still spoken today, it has the longest continuous written tradition. The existing written documents span a period of three millennia and thus enable us to study language history in a long-term perspective. It is very important, in this respect, that the latest stage of development of Aramaic, Neo-Aramaic, still exists in a multitude of spoken varieties which can be studied in vivo. We can thus describe the phonetics and phonology of the modern varieties with more precision than is possible for the older language stages, which in turn enables us to draw conclusions on diachronic sound change. Likewise, we can study morphology and syntax not only from recorded texts, but we also have recourse to native speakers in order to clarify doubtful points. Thus the latest stage of Aramaic casts a strong light back into the past. It is therefore most unfortunate that many Aramaicists and Syrologists show so little interest in this living heritage.
Friedrich Schlegel's lasting contribution to linguistics is usually seen in the impact that his book "Über die Sprache und Weisheit der Indier" from 1808 left on comparative linguistics and on the study of Sanskrit. Schlegel was one of the first European scholars to have studied Sanskrit extensively and he made a number of translations of Sanskrit literature into German which make up one third of "Über die Sprache und Weisheit der Indier". Schlegel's book is widely regarded as a founding document both of comparative linguistics and of indology, a fact which is quite remarkable in light of the development of Schlegel's thought after this text. His interest in Indian studies ceased more or less directly with the publication of this work, while his thoughts on language became more and more suffused by transcendental philosophy.
Extracts of Boswellia serrata, also known as Indian frankincense, have been used to treat inflammatory diseases in the Indian ayurvedic medicine or Chinese traditional medicine (TCM) for over 3000 years, but the molecular mechanisms of the anti-inflammatory effects are still not well understood. It is obvious that the boswellic acids, the major compounds in the extracts, are responsible for the efficacy. This work employed a protein fishing technique to identify putative targets of boswellic acids at different stages within the inflammatory cascade. For fishing experiments, boswellic acids were immobilized to sepharose and incubated with cell lysates. After washing and boiling, fished proteins were separated by SDS-PAGE and analysed by MALDI-TOF-MS. CatG, DNA-PK and the protein kinase Akt were identified by protein pulldowns with immobilised BAs and characterised as selective and important targets for BAs with an IC50 in the range of physiologically achievable plasma levels up to 5 microM. In addition, the influence on several signal transductions by BAs was tested. Calcium influx, arachidonic acid release, platelet aggregation and TNFalpha-release were assayed to reveal further pharmacological effects of BAs. Celecoxib is a well-known selective COX-2 inhibitor that is in clinical use. In this work, it is demonstrated that celecoxib is also a highly potent direct 5-LO inhibitor. Celecoxib is used in arthritis and its gastro-intestinal side effects are reduced compared to non-selective NSAIDs. In patients with a familiar disposition to polyp forming, celecoxib reduced polyps and the incidence of colon cancer. Because of lowered leukotriene levels in patients under celecoxib therapy it was plausible to test whether celecoxib interferes with 5-LO. Here it is shown that the activity of 5-LO is inhibited in PMNL and cell-free assays with IC50 of 8 microM in intact cells, 20 microM with supplemented arachidonic acid and 30 microM in cell-free systems. Thus, celecoxib is a dual inhibitor of COX-2 and 5-LO. Since 2006, celecoxib has been approved as an orphan drug for the treatment of familial adenomatous polyposis. Aside from this indication, it could be useful for treatment of asthma and other diseases where 5-LO is implicated.
Jüdische Grabsteinepigraphik: R. Yosef Trani (1568-1639), R. Akiva Eger (d. 1837), R. David Hoffmann (d. 1921)
In the context of information theory, the term Mutual Information has first been formulated by Claude Elwood Shannon. Information theory is the consistent mathematical description of technical communication systems. To this day, it is the basis of numerous applications in modern communications engineering and yet became indispensable in this field. This work is concerned with the development of a concept for nonlinear feature selection from scalar, multivariate data on the basis of the mutual information. From the viewpoint of modelling, the successful construction of a realistic model depends highly on the quality of the employed data. In the ideal case, high quality data simply consists of the relevant features for deriving the model. In this context, it is important to possess a suitable method for measuring the degree of the, mostly nonlinear, dependencies between input- and output variables. By means of such a measure, the relevant features could be specifically selected. During the course of this work, it will become evident that the mutual information is a valuable and feasible measure for this task and hence the method of choice for practical applications. Basically and without the claim of being exhaustive, there are two possible constellations that recommend the application of feature selection. On the one hand, feature selection plays an important role, if the computability of a derived system model cannot be guaranteed, due to a multitude of available features. On the other hand, the existence of very few data points with a significant number of features also recommends the employment of feature selection. The latter constellation is closely related to the so called "Curse of Dimensionality". The actual statement behind this is the necessity to reduce the dimensionality to obtain an adequate coverage of the data space. In other word, it is important to reduce the dimensionality of the data, since the coverage of the data space exponentially decreases, for a constant number of data points, with the dimensionality of the available data. In the context of mapping between input- and output space, this goal is ideally reached by selecting only the relevant features from the available data set. The basic idea for this work has its origin in the rather practical field of automotive engineering. It was motivated by the goals of a complex research project in which the nonlinear, dynamic dependencies among a multitude of sensor signals should be identified. The final goal of such activities was to derive so called virtual sensors from identified dependencies among the installed automotive sensors. This enables the real-time computability of the required variable without the expenses of additional hardware. The prospect of doing without additional computing hardware is a strong motive force in particular in automotive engineering. In this context, the major problem was to find a feasible method to capture the linear- as well as the nonlinear dependencies. As mentioned before, the goal of this work is the development of a flexibly applicable system for nonlinear feature selection. The important point here is to guarantee the practicable computability of the developed method even for high dimensional data spaces, which are rather realistic in technical environments. The employed measure for the feature selection process is based on the sophisticated concept of mutual information. The property of the mutual information, regarding its high sensitivity and specificity to linear- and nonlinear statistical dependencies, makes it the method of choice for the development of a highly flexible, nonlinear feature selection framework. In addition to the mere selection of relevant features, the developed framework is also applicable for the nonlinear analysis of the temporal influences of the selected features. Hence, a subsequent dynamic modelling can be performed more efficiently, since the proposed feature selection algorithm additionally provides information about the temporal dependencies between input- and output variables. In contrast to feature extraction techniques, the developed feature selection algorithm in this work has another considerable advantage. In the case of cost intensive measurements, the variables with the highest information content can be selected in a prior feasibility study. Hence, the developed method can also be employed to avoid redundance in the acquired data and thus prevent for additional costs.
Given the simplicity of the method and how it can be applied, as well as proof that it lowers the mortality rate, fecal occult blood testing (FOBT) is currently the most commonly used screening method for colorectal cancer (CRC). However, the test suffers from poor sensitivity, particularly with respect to detecting early stages, as well as low acceptance among the population. Preliminary data on detecting calprotectin and tumour-M2-PK in the stool indicated that a better screening performance could be expected. But these tests also suffer from low sensitivity in detecting early stages and from poor specificity, thus limiting the usefulness of the tests as a result of high follow-up costs. Recently developed immunological tests (I-FOBT) demonstrate significantly increased sensitivity and specificity. I-FOBTs use antibodies specific to human hemoglobin and are therefore not affected by diet and drugs, leading to improved patient partipication. At present, I-FOBTs seem to be the most cost-effective approach for non-invasive screening. The detection of tumour-DNA in the stool opens up a new era in early diagnosis of colorectal cancer. Small trials have pointed to a very high sensitivity of these methods: 62–91% for colorectal cancer and between 26% and 73% for adenomas, with a very high level of specificity (93–100%). The major drawback of this type of testing, compared with other screening tests available today, is its high cost.
Attempts to clarify the identity of obscure New Zealand spider taxa have lead to the conclusion that six species are best treated as nomina dubia [Philodromus rubrofrontus Urquhart 1891 (Philodromidae); Dictyna urquhartii Roewer 1951, (Dictynidae); Linyphia albiapiata Urquhart 1891, Linyphia cruenta Urquhart 1891, Linyphia multicolor Urquhart 1891, Linyphia pellos Urquhart 1891 (Linyphiidae)]. Four species currently listed in Araneus Clerck 1757 (Araneidae) are re-affirmed as synonyms [Araneus lineaacutus (Urquhart 1887) = Zealaranea crassa (Walckenaer 1842), Araneus powelli (Urquhart 1894) = Novaranea laevigata (Urquhart 1891), Araneus sublutius (Urquhart 1892b) = Zealaranea trinotata (Urquhart 1890), Araneus ventricosellus (Roewer 1942) = Eriophora heroine (L. Koch 1871)]. An old record of Araneus brisbanae (L. Koch 1867b) (Araneidae) from New Zealand is a misidentification of Eriophora decorosa Urquhart 1894. The family Philodromidae, the genera Dictyna Sundevall 1833 (Dictynidae) and Linyphia Latreille 1804 (Linyphiidae), as well as Tharpyna munda L. Koch 1875 (Thomisidae) and Araneus brisbanae (Araneidae) are absent from New Zealand.
No Love Lost
(2008)
No Love Lost is a tale of troubled times in which the storyteller strives to return to wholesomeness a society whose values have jumped the rail. Set in the 'No Man's Land' of Ongola, the novel unravels the corruption and influence-peddling endemic in this African country. Framed around the travails of an unemployed university graduate, the story is the gripping depiction of one man's vendetta against a society at odds with itself. Among others, the novel explores the themes of identity crisis, political gerrymandering, individual and collective greed, love and marriage, and class exploitation to weave an enduring tapestry of great human interest. Written against the backdrop of nascent neo-colonialism No Love Lost combines the traditional and the modern; the private and the public to demonstrate that the quest for truth and justice behooves all and sundry. The author infuses the narrative with oral traditions to capture the reader's attention in a compelling style. This is a refreshing work by a writer whose heart throbs for his people and their plight.
Antibiotic resistance of pathogenic bacteria is a major worldwide problem. Bacteria can resist antibiotics by active efflux due to multidrug efflux pumps. The focus of this study has been the mycobacterial multidrug transporter TBsmr because it belongs to the small multidrug resistance (SMR) family whose members are a paradigm to study multidrug efflux due to their small size. SMR proteins are typically 11-12 kDa in size and have a four-transmembrane helix topology. They bind cationic, lipophilic antibiotics such as ethidium bromide (EtBr) and TPP+, and transport them across the membrane in exchange for protons. To understand the molecular mechanism of multidrug resistance, we have to gain information about the structure and function of these proteins. The research described in this thesis aimed to deduce details about the topology, transport cycle and key residues of TBsmr using biophysical techniques. Solid-state NMR (ssNMR) can provide detailed insight into structural organization and dynamical properties of these systems. However, a major bottleneck is the preparation of mg amounts of isotope labeled protein. In case of proteoliposomes, the problem is compounded by the presence of lipids which have to fit into the small active volume of the ssNMR rotor. In Chapter 3, an enhanced protein preparation is described which yields large amounts of TBsmr reconstituted in a native lipid environment suitable for further functional and structual studies. The achieved high protein-to-lipid ratios made a further characterization by ssNMR feasible. The transport activity and oligomeric state of the reconstituted protein in different types of lipid was studied as shown in Chapter 4. The exact oligomeric state of native SMR proteins is still uncertain but a number of biochemical and biophysical studies in detergent suggest that the minimal functional unit capable of binding substrate is a dimer. However, binding assays are not ideal since a protein may bind substrate without completing the transport cycle which can only be shown for reconstituted protein in transport assays.By combining functional data of a TPP+ transport assay with information about theoligomeric state of reconstituted TBsmr obtained by freeze-fracture electron microscopy, it could be shown that lipids affect the function and the oligomeric state of the protein, and that the TBsmr dimer is the minimal functional unit necessary for transport. The transport cycle must involve various conformational states of the protein needed for substrate binding, translocation and release. A fluorescent substrate will therefore experience a significant change of environment while being transported, which influences its fluorescence properties. Thus the substrate itself can report intermediate states that form during the transport cycle. In Chapter 5, the existence of such a substrate-transporter complex for the TBsmr and its substrate EtBr could be shown. The pH gradient needed for antiport has been generated by co-reconstituting TBsmr with bacteriorhodopsin. The measurements have shown the formation of a pH-dependant, transient substrate-protein complex between binding and release of EtBr. This state was further characterized by determining the Kd, by inhibiting EtBr transport through titration with non-fluorescent substrate and by fluorescence anisotropy measurements. The findings support a model with a single occluded intermediate state in which the substrate is highly immobile. Liquid-state NMR is a useful tool to monitor protein-ligand interactions by chemical shift mapping and thus identify and characterize important residues in the protein which are involved in substrate binding. In agreement with previous studies (Krueger-Koplin et al., 2004), the detergent LPPG was found to be highly suitable for liquid-state NMR studies of the membrane protein TBsmr and 42% of the residues could be assigned, as reported in Chapter 6. However, no specific interactions with EtBr were found. This observation was confirmed by LILBID mass spectrometry which showed that TBsmr was predominantly in the non-functional monomeric state. Functional protein was prepared in proteoliposomes which can be investigated by solidstate NMR (Chapter 7). Besides the essential E13, the aromatic residues W63, Y40, and Y60 have been shown to be directly involved in drug binding and transport. Different isotope labeling strategies were evaluated to improve the quality of the NMR spectra to identify and characterize these key residues. In a single tryptophan mutant of reconstituted TBsmr W30A, the binding of ethidium bromide could be detected by 13C solid-state NMR. The measurements have revealed two populations of the conserved W63 residue with distinct backbone structures in the presence of substrate. There is a controversy about the parallel or anti-parallel arrangement of the protomers in the EmrE dimer (Schuldiner, 2007) but this structural asymmetry is consistent with both a parallel and anti-parallel topology.
In a combined NMR/MD study, the temperature-dependent changes in the conformation of two members of the RNA YNMG-tetraloop motif (cUUCGg and uCACGg) have been investigated at temperatures of 298, 317 and 325 K. The two members have considerable different thermal stability and biological functions. In order to address these differences, the combined NMR/MD study was performed. The large temperature range represents a challenge for both, NMR relaxation analysis (consistent choice of effective bond length and CSA parameter) and all-atom MD simulation with explicit solvent (necessity to rescale the temperature). A convincing agreement of experiment and theory is found. Employing a principle component analysis of the MD trajectories, the conformational distribution of both hairpins at various temperatures is investigated. The ground state conformation and dynamics of the two tetraloops are indeed found to be very similar. Furthermore, both systems are initially destabilized by a loss of the stacking interactions between the first and the third nucleobase in the loop region. While the global fold is still preserved, this initiation of unfolding is already observed at 317 K for the uCACGg hairpin but at a significantly higher temperature for the cUUCGg hairpin.
Newsletter No 36 Special Pesach edition, April 2008 / Australian Association of Jewish Studies
(2008)
Three new species of the albomarginatus species group of the genus Trachysphyrus (T. fidalgoi, T. riojanus, and T. tmetus) are described from the Subandean Desert (Monte) of Northwest Argentina. A key is given to these and to the five described species also known from Neotropic Argentina in the semiarid Prepuna, Subandino, and Chaco Serrano as well as in such wetter habitats as the Chaco Húmedo and Selva Tucumano-Boliviana (Yungas). Four additional species occur in Neantarctic Chile from Santiago south to Magallanes with overlap into the Nothofagus forests of southwest Argentina (Neuquén, Río Negro). Several species have been reared from cocoons of Lepidoptera (Megalopygidae, Psychidae) and others from mud nests of eumenid wasps (Hypodynerus Saussure, Pachymenes Saussure).
Six new genera are erected as follows: in the Issini, Argepara gen. n. (type species: Hysteropterum semipellucidum Melichar, 1906), Aztecus gen. n. (type species: Hysteropterum montezuma Kirkaldy, 1913), Incasa gen. n. (type species: Hysteropterum riobambae Schmidt, 1910), Bumaya gen. n. (type species: Bumaya knorozovi sp. n.); and in the Colpopterini, Caudibeccus, gen. n. (type species: Colpoptera carlota Myers, 1928) and Jamaha gen. n. (type species: Poeciloptera elevans Walker, 1858). Four new generic synomymies are proposed: Prothona Caldwell, 1945 and Plummerana Caldwell, 1945 are placed in synonymy under Proteinissus Fowler, 1904. Thionissa Metcalf, 1938 is placed in synonymy under Dracela Signoret, 1861. Hesperophara Kirkaldy, 1904 is placed in synonymy under Colpoptera Burmeister, 1835.
This third paper in the NSW Vegetation Classification and Assessment series covers the NSW South-western Slopes Bioregion of 8.192 million hectares being 10% of NSW. A total of 135 plant communities, comprising 97 new communities and 38 previously described communities, are classified. Their protected area and threat status is assessed. A full description of the 135 plant communities is provided in a 400 page report, generated from the NSWVCA database, on the CD accompanying this paper. Eucalyptus-dominated grassy or shrubby woodlands and open forests are the main types of vegetation in the bioregion. The CD also contains a read-only version of Version 2 of the NSWVCA database that includes updated information on the plant communities previously published in Version 1 of the NSWVCA covering the NSW Western Plains. Six new communities are added to the Western Plains. The vegetation classification and assessment is based on published and unpublished vegetation surveys and map unit descriptions that are listed in the NSWVCA Bibliography on the CD, expert advice and extensive field checking. Over 80% of the native vegetation in the NSW South-western Slopes Bioregion has been cleared making it the most cleared and fragmented of the 18 IBRA Bioregions in NSW. Exotic plant species dominate the ground cover outside conservation reserves, state forests, roadsides and travelling stock reserves. As of September 2008 about 1.9% of the Bioregion was in 105 protected areas and 28 of the 135 plant communities were assessed to be adequately protected in reserves. Using NSWVCA Threat Criteria, 18 plant communities were assessed as being Critically Endangered, 33 Endangered, 29 Vulnerable, 25 Near Threatened and 30 Least Concern. Current threats include over-grazing, especially during drought, exotic species dominance of the ground cover, impacts of fragmentation on species persistence and genetic diversity and impacts of lower rainfall due to climate change. To address these threats, linking and enlarging vegetation remnants through revegetation (including regenerating native ground cover) is required. Some progress is being made through re-vegetation schemes driven by the NSW 2003 Natural Resource reforms, however, more incentive funding for landholders would accelerate the re-vegetation program.
New Phycitiplex Porter (Hymenoptera, Ichneumonidae) from Subandean Desert in northwest Argentina
(2008)
Six new species of Phycitiplex (P. obscurior, P. tricinctus, P. unicinctus, P. peralta, P. trichroma, and P. lepidus) are described from material taken by Malaise trap in a humid ravine at Santa Vera Cruz in the Subandean Desert (Monte) of La Rioja Province (Argentina). These are keyed along with several closely related described species. Except for P. eremnus from central Chile, this genus is known only from the semiarid Chaco and Subandean biogeographic provinces in the northern half of Argentina. The only available host record is of Phycitiplex doddi (Cushman) reared from larvae of Cactoblastis cactorum (Berg), a phycitid moth that attacks prickly pear cacti.
Two species groups are proposed for Ommatius Wiedemann, normus and tibialis species groups, increasing the number to eight groups from the Americas. The normus group includes six species, two of which are new, O. nebulosus n. sp. and O. tepui n. sp., from Venezuela. This species group thus far extends from Venezuela southward into Paraguay and southern Brazil. Ommatius pulcher (Engel) is redescribed and a neotype designated. The tibialis group includes eight previously described species from eastern and southwestern United States. Ommatius gemma Brimley is transferred to the costatus group. Keys to the eight species groups and the species of the normus group with illustrations of diagnostic characters are provided. Notes and new distribution data are given for previously described species. The spelling of Ommatius norma Curran and O. ruficauda Curran are changed to agree in gender with the genus name, which is masculine.
A highly efficient method for chromosomal integration of cloned DNA into Methanosarcina spp. was developed utilizing the site-specific recombination system from the Streptomyces phage PhiC31. Host strains expressing the PhiC31 integrase gene and carrying an appropriate recombination site can be transformed with non-replicating plasmids carrying the complementary recombination site at efficiencies similar to those obtained with self-replicating vectors. We have also constructed a series of hybrid promoters that combine the highly expressed M. barkeri PmcrB promoter with binding sites for the tetracycline-responsive, bacterial TetR protein. These promoters are tightly regulated by the presence or absence of tetracycline in strains that express the tetRgene. The hybrid promoters can be used in genetic experiments to test gene essentiality by placing a gene of interest under their control. Thus, growth of strains with tetR-regulated essential genes becomes tetracycline-dependent. A series of plasmid vectors that utilize the site-specific recombination system for construction of reporter gene fusions and for tetracycline regulated expression of cloned genes are reported. These vectors were used to test the efficiency of translation at a variety of start codons. Fusions using an ATG start site were the most active, whereas those using GTG and TTG were approximately one half or one fourth as active, respectively. The CTG fusion was 95% less active than the ATG fusion.
Crohn´s disease (CD) and Ulcerative colitis (UC) are idiopathic inflammatory disorders. Environmental factors, infectious microbes, ethnic origin, genetic susceptibility, and a dysregulated immune system can result in mucosal inflammation. However, the etiology of both CD and UC still remains largely unclear. Inflammatory bowel diseaserelated animal models suggest that a combination of genetic susceptibility factors and altered immune response driven by microbial factors in the enteric environment may contribute to the initiation and chronification of the disease. The intestinal immune system represents a complex network of different lymphoid and non-lymphoid cell populations as well as humoral factors. In inflammatory bowel disease, the controlled balance of the intestinal immune system is disturbed at all levels. In CD, naïve T cells preferably differentiate into Th1 or Th17 producing cells, while in UC, these cells differentiate into aberrant Th2 cells. Overall, in active inflammatory bowel disease effector T cell activity (Th1, Th17, Th2) predominates over regulatory T cells. Animal models of intestinal inflammation are indispensable for our understanding of the pathogenesis of CD and UC. When chosen appropriately, these models proved to be a helpful tool to investigate pathophysiological mechanisms, as well as to test emerging therapeutic options in the preclinical phase. 2,4,6-Trinitrobenzene sulfonic acid (TNBS) and oxazolone are the two major chemicals applied to induce Th1- and Th2-skewed intestinal inflammation, respectively. Colitis can be induced in susceptible strains of mice by intrarectal instillation of the haptenating substances TNBS or oxazolone in ethanol, which is necessary for an initial desintegration of the epithelial barrier. TNBS or oxazolone are believed to haptenize colonic autologous or microbiotic proteins rendering them immunogenic to the host immune system. While TNBS administration in the presence of ethanol results in a transmural infiltrative disease in the entire colon based on an IL-12/IL-23 driven, Th1-or Th17 mediated response, oxazolone instillation finally leads to a colitis caused by a polarized Th2 IL-13-dominated lymphocyte response. Rectal oxazolone instillation in ethanol produces a more superficial inflammation that affects the distal half of the colon rather than the whole colon. Therapeutic modulation of the disturbed immune response in patients with inflammatory bowel disease still represents a complex challenge in the clinic. Currently, none of the therapeutic measure are disease specific and they generally target the pathophysiology downstream of the driving immunpathology. So, there is still the need to develop a tailored approach to prevention of the initiation and perpetuation of the inflammatory cascade before tissue injury occurs. One important aspect of this approach might involve the induction or re-establishment of immunological tolerance. FTY720 following rapid phosphorylation to FTY-P by endogenous sphingosine kinases acts as a sphingosine-1-phosphate (S1P) receptor agonist and represents the prototype of a new generation of S1P receptor modulators. While changing currently its proposed mode of action still focus on the fact, that FTY720 effectively inhibits the egress of T-cells from lymph nodes, thereby reducing the number of antigen-primed/restimulated cells that re-circulate to peripheral inflammatory tissues. However, recent studies indicate, that its immunomodulatory properties might be more complex and exerted not only via interactions with other S1P receptor subtypes but also via a direct modulation of the inflammatory capacity of dendritic cells (DC) resulting in a modified regulation of T cell effector functions as well as in an induction of regulatory T cells and function. 1,25(OH)2D3, the active form of vitamin D, is a secosteroid hormone that has in addition to its central function in calcium and bone metabolism pronounced immune regulatory properties. The biological effects of calcitriol are mediated by the vitamin D receptor (VDR), a member of the superfamily of nuclear hormone receptors. A number of studies identified calcitriol/VDR as prominent negative regulators of Th1-type immune responses, whereas Th2 responses are not affected or even augmented. These effects have been mainly explained by direct activities on lymphocytes, subsequent studies clearly supported a role of calcitriol in modulating monocyte differentiation or DC maturation. However, to translate the immunosuppressive capacities of calcitriol into an effective immunointervention, a great challenge was the design of structural analogs of calcitriol that are devoid of adverse effects related to hypercalcemic activity. The intense study of the 25-oxa series generated a large number of calcitriol analogs exhibiting substantial dissociation between possible immunomodulatory capacities and undesired hypercalcemia. Especially, the combination of the 22-ene modification with the 25-oxa element as realized in ZK156979 yielded a very promising set of new analogs for further characterization in animal models resembling human autoimmune diseases. So, the overall aim of the studies presented here was to evaluate strategies of enhancing regulatory immunity in mouse models of Th1- and Th2-mediated colitis as a new therapeutic approach. To this end we used FTY720, 22-ene-25-oxa vitamin D (ZK156979), as well as the combination of calcitriol and dexamethasone to evaluate the respective pro-tolerogenic potential in intestinal inflammation models in mice. First, to induce Th1-mediated colitis a rectal enema of TNBS was given to Balb/c mice. FTY720 was administered i.p. from day 0-3 or 3-5. FTY720 substantially reduced all clinical, histopathologic, macroscopic, and microscopic parameters of colitis analyzed. The therapeutic effects of FTY720 were associated with a down-regulation of IL-12p70 and subsequent Th1 cytokines. Importantly, FTY720 treatment resulted in a prominent up-regulation of FoxP3, IL-10, TGFβ and CTLA4. Moreover, we observed a significant increase of CD25 and FoxP3 expression in isolated lamina propria CD4+ T cells of FTY720-treated mice. The impact of FTY720 on regulatory T cell induction was further confirmed by concomitant in vivo blockade of CTLA4 or IL-10R which significantly abrogated its therapeutic activity. Thus, our data provide new and strong evidence that besides its well-established migratory properties FTY720 down-regulates proinflammatory signals while simultaneously inducing the functional activity of CD4+CD25+ regulatory T cells. In a second approach, the rectal instillation of oxazolone yielded a Th2-mediated colitis. Treatment with FTY720 prominently reduced the clinical and histopathologic severity of oxazolone-induced colitis, abrogating body weight loss, diarrhea, and macroscopic and microscopic intestinal inflammation. The therapeutic effects of FTY720 were associated with a prominent reduction of the key Th2 effector cytokines IL-13, IL-4 and IL-5. Moreover, FTY720 inhibited GATA3 and T1/ST2 expression, which represent distinct markers for Th2 differentiation and Th2 effector function. Thus, our data are supportive for the view that FTY720 exhibits beneficial prophylactic as well as therapeutic effects in Th2-mediated experimental colitis by directly affecting Th2 cytokine profiles, probably by reducing GATA3 and T1/ST2. Recently, we described 22-ene-25-oxa-vitamin D (ZK156979) as a representative of a novel class of low calcemic vitamin D analogs showing prominent immunomodulative capacities. Here, we used the Th1-mediated TNBS colitis to test its anti-inflammatory properties in vivo. We found that treatment with ZK156979 clearly inhibited the severity of TNBS-induced colitis without exhibiting calcemic effects. Both early and late treatment abrogated all the clinical macroscopic and microscopic parameters of colitis severity; in addition we observed a clear down-regulation of the relevant Th1 cytokine pattern including the T-box transcription factor, T-bet. On the other hand, application of ZK156979 increased local tissue IL-10 and IL-4. Finally, as a new approach we evaluated the pro-tolerogenic potential of calcitriol and dexamethasone in acute Th1-mediated colitis. Calcitriol and/or dexamethasone were administered i.p. from day 0-3 or from day 3-5 following the instillation of the haptenating agent. The combination of these steroids most effectively reduced the clinical and histopathologic severity of TNBS colitis. Th1-related parameters were down- while Th2 markers like IL-4 and GATA3 were up-regulated. Clearly distinguishable from known steroid effects calcitriol in particular promoted regulatory T cell profiles as indicated by a marked increase of IL-10, TGFß, FoxP3 and CTLA4. Furthermore, analysis of DC mediators responsible for a pro-inflammatory differentiation of T cells revealed a clear reduction of IL-12p70, and IL23p19 as well as IL-6 and IL-17. Thus, our data suggest the concept of a steroid-sparing application of calcitriol derivatives in inflammatory bowel disease. Furthermore, the data presented suggest that early markers of inflammatory DC and Th17 differentiation might qualify as new target molecules for both calcitriol as well as for selective immune modulating vitamin D analogs. In conclusion the data of these published investigations added to the substantial progress in understanding the biology of tolerogenic DC and regulatory T cells with respect to their roles in health and disease achieved in the past years. This has led to an increasing interest in the possibility of using DC and regulatory T cells as biological therapeutics to preserve and restore tolerance to self antigens and alloantigens. Especially DC may be helpful to exert their important roles in directing tolerance and immunity by modulation of subpopulations of effector T cells and regulatory T cells. The data demonstrated in the present studies may assist to define the divergent implications of new therapeutic concepts for the treatment of inflammatory bowel disease, especially with regard to a possible auspicious impact on pro-tolerogenic DC and regulatory T cell functions. However, further studies are needed to fulfil our understanding of the complex immunomodulatory profiles of FTY720 as well as of calcitriol and its low calcemic analog ZK156979, thus accelerating their entry into the clinic as new therapeutic options for the cure of inflammatory bowel disease.
New histone deacetylase inhibitors as potential therapeutic tools for advanced prostate carcinoma
(2008)
The anti-epileptic drug valproic acid is also under trial as an anti-cancer agent due to its histone deacetylase (HDAC) inhibitory properties. However, the effects of valproic acid (VPA) are limited and concentrations required for exerting anti-neoplastic effects in vitro may not be reached in tumour patients. In this study, we tested in vitro and in vivo effects of two VPA-derivatives (ACS2, ACS33) on pre-clinical prostate cancer models. PC3 and DU-145 prostate tumour cell lines were treated with various concentrations of ACS2 or ACS33 to perform in vitro cell proliferation 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assays and to evaluate tumour cell adhesion to endothelial cell monolayers. Analysis of acetylated histones H3 and H4 protein expression was performed by western blotting. In vivo tumour growth was conducted in subcutaneous xenograft mouse models. Tumour sections were assessed by immunohistochemistry for histone H3 acetylation and proliferation. ACS2 and ACS33 significantly up-regulated histone H3 and H4 acetylation in prostate cancer cell lines. In micromolar concentrations both compounds exerted growth arrest in PC3 and DU-145 cells and prevented tumour cell attachment to endothelium. In vivo, ACS33 inhibited the growth of PC3 in subcutaneous xenografts. Immunohistochemistry and western blotting confirmed increased histone H3 acetylation and reduced proliferation. ACS2 and ACS33 represent novel VPA derivatives with superior anti-tumoural activities, compared to the mother compound. This investigation lends support to the clinical testing of ACS2 or ACS33 for the treatment of prostate cancer.
An interior delta in the lower course of the Ntem River near the sub-prefecture Ma’an was identified after interpretation of satellite images, topographical maps of SW Cameroon and geological as well as hydrological references and a reconnaissance fieldtrip to the study area. Here neotectonic processes have initiated the establishment of a ‘sediment trap’ (step fault), which in combination with environmental changes strongly generated the fluvial morphology. It transitionally led to temporary lacustrine and palustrine conditions in parts of this river section. Inside the interior delta an anastomosing multi-branched river system has developed, which contains ‘stillwater locations', periodically inundated sections, islands and rapids. Following geomorphological, physiogeographical and sedimentological research approaches, the alluvial plain has been prospected and studied extensively. 91 hand-corings, including three NE–SW transects, were carried out on river benches, levees, cut-off and periodical branches, islands as well as terraces throughout the entire alluvial plain and have unveiled multi-layered, sandy to clayey alluvia reaching up to 440 cm depth. At many locations, fossil organic horizons and palaeosurfaces were discovered, containing valuable palaeoenvironmental proxy data. At these sites, through additional detailed stratigraphical analysis (close-meshed hand-coring and exposure digging) a comprehensive insight into the stratification (lamination) of the alluvia could be gained, clarifying processes and conditions that prevailed in the catchment area during the period of their deposition. 32 Radiocarbon data of macro-rests (leafs, wood), charcoal and organic sediment sampled from these horizons provided ages between 48.230 ± 6.411 and 217 ± 46 years BP (not calibrated). This constitutes the importance of the alluvia as an additional, innovative palaeoarchive for proxy data contributing to the reconstruction of palaeoenvironment and palaeoclimate in western Equatorial Africa. The further examination of the alluvia will not only provide additional information on the dynamics of vegetation, climate and hydrology (esp. fluvial morphology) in SW Cameroon since the ‘First Millennium BC Crisis’ (around 3.000 years BP), the main focus of the DFG-research project, but also on conditions prevailing since the Late Pleistocene, during the Last Glacial Maximum (~18.000 years BP), the Younger Dryas impact (~11.000 years BP) and the ‘Humid African Period’ (~9.000–6.000 years BP). Delta13C-values (–31,4 to –26,4‰) evidence that at the particular drilling sites rain forest has prevailed during the corresponding time period (rain forest refuge theory). The sampled macrorests all indicate rain forest dominated ecosystems, which were able to persist in fluvial habitats, even during arid periods.
Background: The combination of stavudine (d4T), 3TC and NVP was the WHO recommended first-line regimen for the treatment of naïve HIV-1 infected patients in resource-limited settings. But peripheral polyneuropathy, lipoatrophy and symptomatic hyperlactatemia are frequent and treatment-limiting adverse events associated with stavudine, especially when combined with antituberculous drugs. Tenofovir combined with lamivudine and efavirenz has proven excellent efficacy, but there is little experience when given with NVP.
Methods: Retrospective analysis of all patients receiving TDF, NVP and 3TC or FTC as first-line treatment in the Frankfurt HIV cohort.
Summary of results: 70 patients (15 female) with a median CD4 cell count of 210/μl (47–949) and HIV-RNA PCR of 140,000 copies/ml (2,500–2,000,000) at baseline received TDF, NVP and 3TC/FTC, and were treated for a median of 68 weeks (16–278). CD4 cells rose up to cells/μl 322 (119–1075) and 75% of the patients remained on treatment. All patients on treatment at week 48 were <50 c/ml, even those starting with CD4 cells of <200 cells/μl or a HIV-RNA PCR >100,000 c/m. Reasons for discontinuation (24%) were mainly adverse events (13%), with rash (7%) and liver toxicity (6%) being the two most common, whereas virologic failure, drug interaction and non-adherence were all relatively rare (each 3%).
Conclusion: The combination of NVP, TDF and 3TC or FTC is effective and well tolerated in previously naïve HIV-1 infected patients even when started with low CD4 cell counts (<200/ml) and high viral loads (>100,000 c/ml). In the latest amendment of the WHO guidelines TDF, instead of d4T, is the recommended first-line treatment in resource-limited settings.
Visual information is processed hierarchically in the human visual system. Early during processing basic features are analysed separately while at later stages of processing, they are integrated into a unified percept. By investigating a basic visual feature and following its integration at different levels of processing one can identify specific patterns. In certain visual impairments, these patterns can function defectively and their detailed study can clarify the cause of the visual deficit. Here we investigate orientation as a basic feature and use a property of the visual system called adaptation. Adaptation occurs as a decrease in the level of neural activity during repetitive presentation of the same stimulus. Psychophysical studies have shown that adaptation transfers interocularly, meaning that if only one eye is adapted the other eye shows also adaptation effects. Our aim was to investigate interocular transfer by means of functional magnetic resonance imaging (fMRI). Even though adaptation was demonstrated in the fMRI environment, the interocular transfer was never investigated in such a setup. First, we developed a method to measure interocular transfer of adaptation to gratings with fMRI. We then went further to test it in various groups of subjects. In normally sighted humans interocular transfer was present both in early (striate) as well as later visual areas (extrastriate). In subjects with impaired stereovision (with or without normal visual acuity) interocular transfer was absent in the investigated regions. Detailed analysis of the recorded differences between subjects with and subjects without stereovision was performed. The results of this analysis are presented in detail in this book. These results suggest that the neuronal mechanisms involved in the interocular transfer of pattern adaptation share, at least in part, the neural circuitry underlying binocular functions and stereopsis. We conclude that fMRI adaptation can be used for the assessment of cortical binocularity in humans with normal and impaired stereopsis. Further investigations are needed to address more subtle aspects of the lack of interocular transfer. Towards this purpose, through a fourth experiment we propose further directions that might shed more light on the issue of stereovision and its clinical implications. We show that carefully tuned variations in our experimental procedure might reveal other aspects of binocularity in the human visual system. We believe that the method we developed, apart from the interesting results shown here, has a high potential to be further used for other research questions. Following the above summarized ideas, the thesis comprises of three parts (chapters). The first chapter provides the main theoretical backgrounds of the visual system and of the MRI imaging technique, chapter two describes the experimental procedures while the results and their detailed discussion are detailed in chapter three.
Whether minorities such as the Māori in Aotearoa New Zealand, the San across Southern Africa and the Métis in Canada, or native majority peoples such as the Aymara and Quechua in South America: indigenous peoples" lifeworlds have been transfigured by the difficulties originating from a history of conquest, settlement and suppression. The imperialist strife of European empires and the atrocities committed by their gang of "explorers" – including "this person Cook" in the South Pacific, Columbus in North America, Cortéz in Mexico, Gomes in West Africa, or van Riebeeck in South Africa – was aimed at enforcing European values and institutions, destroying, silencing or marginalizing indigenous cultures and societies as inferior "others." Unsurprisingly, the disruption of formal colonialism in the second half of the 20th century held no inherent improvement for the concerns of formerly colonized peoples. ...
Investigations of the micro- and nanostructures and chemical composition of the sponge skeletons as examples for natural structural biocomposites are of fundamental scientific relevance. Recently, we show that some demosponges (Verongula gigantea, Aplysina sp.) and glass sponges (Farrea occa, Euplectella aspergillum) possess chitin as a component of their skeletons. The main practical approach we used for chitin isolation was based on alkali treatment of corresponding external layers of spicules sponge material with the aim of obtaining alkali-resistant compounds for detailed analysis. Here, we present a detailed study of the structural and physicochemical properties of spicules of the glass sponge Rossella fibulata. The structural similarity of chitin derived from this sponge to invertebrate alpha chitin has been confirmed by us unambiguously using physicochemical and biochemical methods. This is the first report of a silica-chitin composite biomaterial found in Rossella species. Finally, the present work includes a discussion related to strategies for the practical application of silica-chitin-based composites as biomaterials.
This thesis deals with the analysis of “presolar” silicates and oxides by high resolution mass spectrometry and electron microscopy techniques. This “stardust” was identified by its extreme oxygen isotopic anomalies, which point to nucleosynthetic reactions in stellar interiors, in the carbonaceous chondrite Acfer 094. Isotopic, chemical and mineralogical studies on these stardust grains therefore allow the testing of astrophysical questions on Earth, which are otherwise only accessible by spectroscopy and theoretical models. The class of presolar silicates has been identified only six years ago in 2002, although it was known already from spectroscopic observations that silicates represent the most abundant type of dust in the galaxy. The development of the “NanoSIMS” was a crucial step in this respect, because this ion probe with its superior spatial resolution of only 50 nm allowed the detection of the typically 300 nm sized presolar silicates. A total of 142 presolar silicates and 20 presolar oxides were identified within Acfer 094, whose matrix therefore contains 163 ± 14 ppm presolar silicates and 26 ± 6 ppm presolar oxides. This is among the highest amounts reported so far for any primitive solar system material. The majority of detected stardust grains derive from asymptotic giant branch stars of 1 – 2.5 Msun and close-to-solar or slightly lower-than-solar metallicity. However, by measuring the Si isotopic compositions of some enigmatic grains, it could be shown that there is a sub-class of presolar silicates characterized by an extreme enrichment of 17O and a moderate enhancement of 30Si relative to solar, whose origins might be explained by formation in binary stellar systems. About 10% of all grains exhibit an enrichment in 18O and some of them also of 28Si relative to solar, which most likely point to an origin in type II supernova explosions. The Si isotopic measurements also allowed to quantify the effect of the s-process on the Si isotopes in low-mass asymptotic giant branch stars. The results agree well with theoretical predictions. The grains were furthermore characterized by SEM and the chemistries of about half of the grains were determined by Auger electron spectroscopy. The majority of grain morphologies are consistent with what is expected from condensation experiments. However, a lot of grains are altered by Fe-rich minerals, which are either of primary condensation or of secondary ISM or solar nebula origin. Furthermore, complex presolar grains consisting of refractory Al-rich grains attached to silicate material could be identified, which have been predicted by condensation theory and observational evidence. Nine presolar silicates were analyzed by combined NanoSIMS/TEM studies. The majority of grains are Mg-rich and amorphous, which is in contrast to astrophysical evidence, which mainly postulate crystalline Mg-rich and amorphous Fe-rich circumstellar condensates. However, the grains might have been rendered amorphous by secondary processes in the ISM or could have condensed under non-equilibrium, low-temperature conditions in the circumstellar outflow. The grains are more likely characterized by a variable, pyroxene-like chemistry, which could be a result of sputtering in the ISM, which preferentially removes Mg. The detected crystalline presolar silicates in this study and in other work are all olivines, whereas grains with a pyroxene stoichiometry are all amorphous except one. This supports astrophysical models which point to different formation pathways for these two types of grains and therefore different crystallinity. However, the relatively high Fe content of three detected presolar olivines in this study and in other work is in contrast to astrophysical evidence and theoretical considerations, which predict essentially Fe-free crystalline grains. It is therefore possible that the infrared spectra might also be compatible with less Mg-rich olivines. The only crystalline presolar silicate with a pyroxene-like stoichiometry is the unusual grain 1_07: although it is chemically enstatite, the electron diffraction pattern could only be indexed to silicate perovskite, which is stable above ~23 GPa. The discovery of a high-pressure phase of presolar origin shows that dust grains encountering interstellar shocks might not necessarily be completely destroyed. In astrophysical models it is in principle also possible that a fraction of larger grains might survive such a shock wave encounter as a high-pressure modification, which is supported by this discovery.
Many highly active antitumour agents are currently not employable for the systemic chemotherapy of brain tumours since their entrance into the brain is blocked by the BBB. Obviously, the development of a strategy allowing effective delivery of these agents across the BBB would enormously extend the potential of the systemic chemotherapy. Chemotherapy of rat glioblastoma using nanoparticle-bound doxorubicin Doxorubicin bound to polysorbate-coated nanoparticles had been previously shown to significantly enhance survival in the orthotopic rat 101/8 glioblastoma model. The objective of this study was to investigate the therapeutic effects of this formulation by morphometric, histological and immunohistological methods. The 101/8 glioblastoma was implanted intracranially into the male Wistar rats. The animals were randomly divided into 3 groups; one group served as untreated control (n = 20). The second group received doxorubicin in solution (Dox-sol, n = 18), and the third group received doxorubicin bound to PBCA nanoparticles coated with PS 80 (Dox-NP + PS 80, n = 18). The treatment regimen was 3 × 1.5 mg/kg on days 2, 5, and 8 after tumor implantation. The formulations were injected into the tail vein. The untreated control animals were sacrificed on days 6, 8, 10, 12, and 14 after the implantation. The animals that had received chemotherapy were sacrificed on day 10, 14 and 18 after the implantation. The brains were investigated by morphometrical, histochemical, and immunohistochemical methods such as the measurement of the tumor size, proliferation of tumor cells, vessel density, expression of glial fibrillary acidic protein (GFAP), expression of vascular endothelial growth factor (VEGF), incidence and dimension of necrosis, and microvascular proliferation. Tumours showed signs of malignancy including invasion to brain tissue and brisk mitotic activity. The tumor proliferation remained stable at high levels throughout the host survival time. Overall, the tumor showed a reproducible growth pattern and temporal development that is comparable to human glioblastoma. Furthermore, the 101/8 glioblastoma had infiltrated diffusely the surrounding host brain at the edge of the solid tumor mass showed no signs of encapsulation. Thus the 101/8 glioblastoma fulfills the most criteria for an adequate glioma model and can be qualified as a reliable model. ...
The title compound, C15H14N2O4, is an important intermediate for the synthesis of thermotropic liquid crystals. The dihedral angle between the two aromatic rings is 84.29 (4)°. An N-H...O hydrogen bond connects the molecules into chains running along the b axis. In addition, the crystal packing is stabilized by weak C-H...O hydrogen bonds. Key indicators: single-crystal X-ray study; T = 173 K; mean σ(C–C) = 0.002 Å; R factor = 0.036; wR factor = 0.096; data-to-parameter ratio = 14.3.
In the title compound, C13H10N2O2, a Schiff base derivative, the dihedral angle between the two aromatic rings is 31.58 (3)°. The C=N double bond is essentially coplanar with the nitrophenyl ring. The torsion angle of the imine double bond is 175.97 (13)°, indicating that the C=N double bond is in a trans configuration. The crystal structure is stabilized by C-H...O contacts and [pi]-[pi] interactions (centroid-centroid distances of 3.807 and 3.808 Å). Key indicators: single-crystal X-ray study; T = 173 K; mean σ(C–C) = 0.002 Å; R factor = 0.034; wR factor = 0.093; data-to-parameter ratio = 10.3.
In the title compound, C14H12N2O3, the dihedral angle between the two aromatic rings is 41.48 (5)°. The nitro group is twisted by 24.7 (3)° out of the plane of the aromatic ring to which it is attached. The molecules are connected by N-H...O hydrogen bonds into chains running along the alpha axis. Key indicators: single-crystal X-ray study; T = 273 K; mean σ(C–C) = 0.003 Å; R factor = 0.031; wR factor = 0.078; data-to-parameter ratio = 7.7.
Geometric parameters of the title compound, C14H12N2O4, are in the usual ranges. The dihedral angle between the two aromatic rings is 28.9 (1)°. The nitro group is twisted by 40.2 (1)° out of the plane of the aromatic ring to which it is attached. The crystal structure is stabilized by an N-H...O hydrogen bond. Key indicators: single-crystal X-ray study; T = 173 K; mean σ(C–C) = 0.004 Å; R factor = 0.045; wR factor = 0.111; data-to-parameter ratio = 7.3.
We develop a multivariate generalization of the Markov–switching GARCH model introduced by Haas, Mittnik, and Paolella (2004b) and derive its fourth–moment structure. An application to international stock markets illustrates the relevance of accounting for volatility regimes from both a statistical and economic perspective, including out–of–sample portfolio selection and computation of Value–at–Risk.
Poster presentation: Introduction The brain is a highly interconnected network of constantly interacting units. Understanding the collective behavior of these units requires a multi-dimensional approach. The results of such analyses are hard to visualize and interpret. Hence tools capable of dealing with such tasks become imperative. ....
The µ-opioid receptor is the primary target structure of most opioid analgesics and thus responsible for the predominant part of their wanted and unwanted effects. Carriers of the frequent genetic µ-opioid receptor variant N40D (allelic frequency 8.2 - 17 %), coded by the single nucleotide polymorphism A>G at position 118 of the µ-opioid receptor coding gene OPRM1 (OPRM1 118A>G SNP), suffer from a decreased opioid potency and from a higher need of opioid analgesics to reach adequate analgesia. The aim of the present work was to identify the mechanism by which the OPRM1 118A>G SNP decreases the opioid potency and to quantify its effects on the analgesic potency and therapeutic range of opioid analgesics.
To elucidate the consequences of the OPRM1 118A>G SNP for the effects of opioid analgesics, brain regions of healthy homozygous carriers of the OPRM1 118A>G SNP were identified by means of functional magnetic resonace imaging (fMRI), where the variant alters the response to opioid analgesics after painful stimulation. Afterwards, the µ-opioid receptor function was analyzed on a molecular level in post mortem samples of these brain regions. Finally, the consequences of the OPRM1 118A>G SNP for the analgesic and respiratory depressive effects of opioids were quantified in healthy carriers and non-carriers of OPRM1 118A>G SNP by means of experimental pain- and respiratory depression-models.
To identify pain processing brain regions, where the variant alters the response to opioid analgesics after painful stimulation, we investigated the effects of different alfentanil concentration levels (0, 25, 50 and 75 ng/ml) on pain-related brain activation achieved by short pulses (300 msec) of gaseous CO2 (66% v/v) delivered to the nasal mucosa using a 3.0 T magnetic head scanner in 16 non-carriers and nine homozygous carriers of the µ-opioid receptor gene variant OPRM1 118A>G. In brain regions associated with the processing of the sensory dimension of pain (pain intensity), such as the primary and secondary somatosensory cortices and the posterior insular cortex, the activation decreased linearly in relation to alfentanil concentrations, which was significantly less pronounced in OPRM1 118G carriers. In contrast, in brain regions known to process the affective dimension of pain (emotional dimension), such as the parahippocampal gyrus, amygdala and anterior insula, the pain-related activation disappeared already at the lowest alfentanil dose, without genotype differences.
Subsequently, we investigated the µ-opioid receptor-expression ([3H]-DAMGO saturation experiments, OPRM1 mRNA analysis by means of RT-PCR), the µ-opioid receptor affinity ([3H]-DAMGO saturation and competition experiments) and µ-opioid receptor signaling ([35S]- GTPγS binding experiments) in post mortem samples of the human SII-region, as a cortical projection region coding for pain intensity, and lateral thalamus, as an important region for nociceptive transmission. Samples of 22 non-carriers, 21 heterozygous and three homozygous carriers of OPRM1 118A>G SNP were included into the analysis. The receptor expression and receptor affinity of both brain regions did not differ between non-carriers and carriers of the variant N40D. In non-carriers, the µ-opioid receptors of the SII-region activated the receptor bound G-protein more efficiently than those of the thalamus (factor 1.55-2.27). This regional difference was missing in heterozygous (factor 0.78-1.66) and homozygous (factor 0.66-1.15) carriers of the N40D variant indicating a reduced receptor-G-protein-coupling in the SII-region.
Finally, the consequences of the alteration of µ-opioid receptor function in carriers and noncarriers of the genetic variant was investigated using pain- and respiratory depression-models. Therefore, 10 healthy non-carriers, four heterozygous and six homozygous carriers of the µ- opioid receptor variant N40D received an infusion of four different concentrations of alfentanil (0, 33.33, 66.66 and 100 ng/ml). At each concentration level, analgesia was assessed by means of electrically (5 Hz sinus 0 to 20 mA) and chemically (200 ms gaseous CO2 pulses applied to the nasal mucosa) induced pain, and respiratory depression was quantified by means of hypercapnic challenge according to Read and recording of the breathing frequency. The results showed that depending on the used pain model, both heterozygous and homozygous carriers of the variant N40D needed 2 – 4 times higher alfentanil concentrations to achieve the same analgesia as non-carriers. This increase seems to be at least for homozygous carriers unproblematic, because to reach a comparable respiratory depression as non-carriers, they needed 10-12 times higher alfentanil concentrations.
The results of this work demonstrate that the µ-opioid receptor variant N40D causes a regionally limited reduction of the signal transduction efficiency of µ-opioid receptors in brain regions involved in pain processing. Thus, the painful activation of sensory brain regions coding for pain intensity is not sufficiently suppressed by opioid analgesics in carriers of the variant N40D. Due to the insufficient suppression in hetero- and homozygous carriers of the variant N40D, the concentration of opioids has to be increased by a factor 2 - 4, in order to achieve the same analgesia as in non-carriers. At the same time, the respiratory depressive effects are decreased to a greater extent in homozygous carriers of the N40D variant as they need a 10 - 12 times higher opioid concentration to suffer from the same degree of respiratory depression as non-carriers. Due to the increased therapeutic range of opioid analgesics, an increase of the opioid dose seems to be harmless, at least for homozygous carriers of the N40D variant.
The claim of this paper is that embedded definites can, despite the appearances, be accounted for on the uniqueness approach. Far from being a surprise, we argue that the behavior of embedded definites is actually expected once two independent facts are taken into account: the ability of noun phrases to take scope, i.e., to be interpreted in a different place from their syntactic position, and the interaction of presuppositions and scope-taking elements. Specifically, we analyze embedded definites as a case of inverse linking (Gabbay and Moravscik, 1974; May, 1977): the embedded definite takes scope over the embedding one. The presupposition of the embedded definite is weakened as a result of the independently motivated process of intermediate accommodation (Kratzer, 1989; Berman, 1991). In our case, this process transfers the presupposition of the embedding definite into the restrictor of the embedded one.
Like other scope-taking processes, inverse linking is generally taken to be subject to locality constraints: if a syntactic island, such as a finite clause boundary, intervenes in the path of a scope-taking element, then the resulting reading is unavailable or degraded (Rodman, 1976). Since our account views embedded definites as cases of inverse linking, we predict that inserting an island into an embedded definite, all else being equal, should lead to a similar degradation. We report results from an online survey with 800 participants that confirm this prediction.
Several articulatory strategies are available during the production of /u/, all resulting in a similar acoustic output. /u/ has two main constrictions, at the velum and at the lips. A perturbation of either constriction can be compensated at the other one, e.g wider constriction at the velum by more lip protrusion, wider lip opening by more tongue retraction. This study investigates whether speakers use this relation under perturbation. Six speakers were provided with palatal prostheses which were worn for two weeks. Speakers were instructed to make a serious attempt to produce normal speech. Their speech was recorded via EMA and acoustics several times over the adaptation period. Formant values of /u/-productions were measured. Velar constriction width and lip protrusion were estimated. For four speakers a correlation between constriction width and lip protrusion was found. A negative correlation between lip protrusion and F1 or F2 could sometimes be observed, but no correlation occurred between constriction size and either of the formants. The results show that under perturbation speakers use motor equivalent strategies in order to adapt. The correlation between constriction size and lip protrusion is stronger than in studies investigating unperturbed speech. This could be because under perturbation speakers are inclined to try out several strategies in order to reach the acoustic target and the co-variability might thus be greater.
During the APE-THESEO mission in the Indian Ocean the Myasishchev Design Bureau stratospheric research aircraft M55 Geophysica performed a flight over and within the inner core region of tropical cyclone Davina. Measurements of total water, water vapour, temperature, aerosol backscattering, ozone and tracers were made and are discussed here in comparison with the averages of those quantities acquired during the campaign time frame. Temperature anomalies in the tropical tropopause layer (TTL), warmer than average in the lower part and colder than average in the upper TTL were observed. Ozone was strongly reduced compared to its average value, and thick cirrus decks were present up to the cold point, sometimes topped by a layer of very dry air. Evidence for meridional transport of trace gases in the stratosphere above the cyclone was observed and perturbed water distribution in the TTL was documented. The paper discuss possible processes of dehydration induced by the cirrus forming above the cyclone, and change in the chemical tracer and water distribution in the lower stratosphere 400–430 K due to meridional transport from the mid-latitudes and link with Davina. Moreover it compares the data prior and after the cyclone passage to discuss its actual impact on the atmospheric chemistry and thermodynamics.
The vegetation of montane lagoons of the New England Tablelands Bioregion, New South Wales is examined using flexible UPGMA analysis of frequency scores on all vascular plant taxa, charophytes and one liverworts. Seven communities are described: 1. Hydrocotyle tripartita – Isotoma fluviatilis – Ranunculus inundatus – Lilaeopsis polyantha herbfield; 2. Eleocharis sphacelata – Potamogeton tricarinatus sedgeland; 3. Eleocharis sphacelata – Utricularia australis – Isolepis fluitans, herbfield; 4. Utricularia australis – Nitella sonderi herbfield; 5. Eleocharis sphacelata – Utricularia australis – Ricciocarpus natans sedgeland; 6. Carex gaudichaudiana – Holcus lanatus – Stellaria angustifolia sedgeland; 7. Cyperus sphaeroides – Eleocharis gracilis – Schoenus apogon – Carex gaudichaudiana sedgeland. 58 lagoons were located and identified, only 28% of which are considered to be intact and in good condition. Two threatened species (Aldovandra vesiculosa and Arthaxon hispidus) and three RoTAP-listed taxa were encountered during the survey.
When a spot market monopolist participates in a derivatives market, she has an incentive to deviate from the spot market monopoly optimum to make her derivatives market position more profitable. When contracts can only be written contingent on the spot price, a risk-averse monopolist chooses to participate in the derivatives market to hedge her risk, and she reduces expected profits by doing so. However, eliminating all risk is impossible. These results are independent of the shape of the demand function, the distribution of demand shocks, the nature of preferences or the set of derivatives contracts.
Recently, the Bank of Japan outlined a “two perspectives” approach to the conduct of monetary policy that focuses on risks to price stability over different time horizons. Interpreting this as pertaining to different frequency bands, we use band spectrum regression to study the determination of inflation in Japan. We find that inflation is related to money growth and real output growth at low frequencies and the output gap at higher frequencies. Moreover, this relationship reflects Granger causality from money growth and the output gap to inflation in the relevant frequency bands. Keywords: spectral regression, frequency domain, Phillips curve, quantity theory. JEL Numbers: C22, E3, E5
Pulsed electron-electron double resonance (PELDOR) is a well established method concerning nanometer distance measurements involving two nitroxide spin-labels. In this thesis the applicability of this method to count the number of spins is tested. Furthermore, this work explored the limits, up to which PELDOR data obtained on copper(II)-nitroxide complexes can be quantitatively interpreted. Spin counting provides access to oligomerization studies – monitoring the assembly of homo- or hetero-oligomers from singly labeled compounds. The experimental calibration was performed using model systems, which contain one to four nitroxide radicals. The results show that monomers, dimers, trimers, and tetramers can be distinguished within an error of 5% in the number of spins. Moreover, a detailed analysis of the distance distributions in model complexes revealed that more than one distance can be extracted from complexes bearing several spins, as for example three different distances were resolved in a model tetramer – the other three possible distances being symmetry related. Furthermore, systems exhibiting mixtures of oligomeric states complicate the analysis of the data, because the average number of spin centers contributes nonlinearly to the signal and different relaxation behavior of the oligomers has to be treated explicitly. Experiments solving these problems are proposed in the thesis. Thus, for the first time spin counting has been experimentally calibrated using fully characterized test systems bearing up to four spins. Moreover, the behavior of mixtures was quantitatively interpreted. In addition, it has been shown that several spin-spin distances within a molecule can be extracted from a single dataset. In the second part of the thesis PELDOR experiments on a spin-labeled copper(II)-porphyrin have been quantitatively analyzed. Metal-nitroxide distance measurements are a valuable tool for the triangulation of paramagnetic metal ions. Therefore, X-band PELDOR experiments at different frequencies have been performed. The data exhibits only weak orientation selection, but a fast damping of the oscillation. The experimental data has been interpreted based upon quantitative simulations. The influence of orientation selection, conformational flexibility, spin-density distribution, exchange interaction J, as well as anisotropy and strains of the g-tensor has been examined. An estimate of the spin-density delocalization has been obtained by density functional theory calculations. The dipolar interaction tensor was calculated from the point-charge model, the extension of the point-dipole approximation to several spin bearing centers. Even assuming asymmetric spin distributions induced by an ensemble of asymmetrically distorted porphyrins the effect of delocalization on the PELDOR time trace is weak. The observed damping of dipolar oscillations has been only reproduced by simulations, if a small distribution in J was assumed. It has been shown that the experimental damping of dipolar modulations is not solely due to conformational heterogeneity. In conclusion the quantitative interpretation of PELDOR data is extended to copper-nitroxide- and multi-spin-systems. The influence of the mean distance, of the number of coupled spins, of the conformational flexibility, of spin-density distribution and of the electronic structure of the spin centers has been analyzed using model systems. The insights on model compounds mimicking spin-labeled biomacromolecules – in oligomeric or metal bound states – calibrate the method with respect to the information that can be deduced from the experimental data. The resulting in-depth understanding allows correlating experimental results (from for example biological systems) with models of structure and dynamics. It also opens new fields for PELDOR as for example triangulation of metal centers and oligomerization studies. In general, this thesis has demonstrated that modern pulsed electron paramagnetic resonance techniques in combination with quantitative data analysis can contribute to a detailed insight into molecular structure and dynamics.
Poster presentation In pharmaceutical research and drug development, machine learning methods play an important role in virtual screening and ADME/Tox prediction. For the application of such methods, a formal measure of similarity between molecules is essential. Such a measure, in turn, depends on the underlying molecular representation. Input samples have traditionally been modeled as vectors. Consequently, molecules are represented to machine learning algorithms in a vectorized form using molecular descriptors. While this approach is straightforward, it has its shortcomings. Amongst others, the interpretation of the learned model can be difficult, e.g. when using fingerprints or hashing. Structured representations of the input constitute an alternative to vector based representations, a trend in machine learning over the last years. For molecules, there is a rich choice of such representations. Popular examples include the molecular graph, molecular shape and the electrostatic field. We have developed a molecular similarity measure defined directly on the (annotated) molecular graph, a long-standing established topological model for molecules. It is based on the concepts of optimal atom assignments and iterative graph similarity. In the latter, two atoms are considered similar if their neighbors are similar. This recursive definition leads to a non-linear system of equations. We show how to iteratively solve these equations and give bounds on the computational complexity of the procedure. Advantages of our similarity measure include interpretability (atoms of two molecules are assigned to each other, each pair with a score expressing local similarity; this can be visualized to show similar regions of two molecules and the degree of their similarity) and the possibility to introduce knowledge about the target where available. We retrospectively tested our similarity measure using support vector machines for virtual screening on several pharmaceutical and toxicological datasets, with encouraging results. Prospective studies are under way.
Interleukin (IL)-18, formerly known as interferon (IFN)-γ-inducing factor, is a crucial mediator of host defence and inflammation. Control of IL-18 bioactivity by its endogenous antagonist IL-18 binding protein (IL-18BP) is a major objective of immunoregulation. IL-18BP is strongly up-regulated by IFN-γ, thereby establishing a negative feedback mechanism detectable in cell culture and in vivo. Here we sought to investigate in D.L. Dexter (DLD) colon carcinoma cells molecular mechanisms of IL-18BP induction under the influence of IFN-γ. Mutational analysis revealed that a proximal γ-activated sequence (GAS) at the IL-18BP promoter is of pivotal importance for expression by IFN-γ-activated cells. Use of siRNA underscored the essential role of the signal transducer and activator of transcription (STAT)-1 in this process. Indeed, electrophoretic mobility shift assay and chromatin immunoprecipitation analysis proved STAT1 binding to this particular GAS site. Maximal expression of IL-18BP was dependent on de novo protein synthesis but unaffected by silencing of interferon regulatory factor-1. Altogether, data presented herein indicate that direct action of STAT1 on the IL-18BP promoter at the proximal GAS element is key to IL-18BP expression by IFN-γ-stimulated DLD-1 colon carcinoma cells.
Background The inhibitor telaprevir (VX-950) of the hepatitis C virus (HCV) protease NS3-4A has been tested in a recent phase 1b clinical trial in patients infected with HCV genotype 1. This trial revealed residue mutations that confer varying degrees of drug resistance. In particular, two protease positions with the mutations V36A/G/L/M and T54A/S were associated with low to medium levels of drug resistance during viral breakthrough, together with only an intermediate reduction of viral replication fitness. These mutations are located in the protein interior and far away from the ligand binding pocket. Results Based on the available experimental structures of NS3-4A, we analyze the binding mode of different ligands. We also investigate the binding mode of VX-950 by protein-ligand docking. A network of non-covalent interactions between amino acids of the protease structure and the interacting ligands is analyzed to discover possible mechanisms of drug resistance. We describe the potential impact of V36 and T54 mutants on the side chain and backbone conformations and on the non-covalent residue interactions. We propose possible explanations for their effects on the antiviral efficacy of drugs and viral fitness. Molecular dynamics simulations of T54A/S mutants and rotamer analysis of V36A/G/L/M side chains support our interpretations. Experimental data using an HCV V36G replicon assay corroborate our findings. Conclusion T54 mutants are expected to interfere with the catalytic triad and with the ligand binding site of the protease. Thus, the T54 mutants are assumed to affect the viral replication efficacy to a larger degree than V36 mutants. Mutations at V36 and/or T54 result in impaired interaction of the protease residues with the VX-950 cyclopropyl group, which explains the development of viral breakthrough variants.
We present a measurement of e+e− pair production in central PbAu collisions at 158A GeV/c. As reported earlier, a significant excess of the e+e− pair yield over the expectation from hadron decays is observed. The improved mass resolution of the present data set, recorded with the upgraded CERES experiment at the CERN-SPS, allows for a comparison of the data with different theoretical approaches. The data clearly favor a substantial in-medium broadening of the ρ spectral function over a density-dependent shift of the ρ pole mass. The in-medium broadening model implies that baryon induced interactions are the key mechanism to the observed modifications of the ρ meson at SPS energy.
This work presents a contribution to the literature on methods in search of lowdimensional models that yield insight into the equilibrium and kinetic behavior of peptides and small proteins. A deep understanding of various methods for projecting the sampled configurations of molecular dynamics simulations to obtain a low-dimensional free energy landscape is acquired. Furthermore low-dimensional dynamic models for the conformational dynamics of biomolecules in reduced dimensionality are presented. As exemplary systems, mainly short alanine chains are studied. Due to their size they allow for performing long simulations. They are simple, yet nontrivial systems, as due to their flexibility they are rapidly interconverting conformers. Understanding these polypeptide chains in great detail is of considerable interest for getting insight in the process of protein folding. For example, K. Dill et al. conclude in their review [28] about the protein folding problem that "the once intractable Levinthal puzzle now seems to have a very simple answer: a protein can fold quickly and solve its large global optimization puzzle simply through piecewise solutions of smaller component puzzles".
Many new gene copies emerged by gene duplication in hominoids, but little is known with respect to their functional evolution. Glutamate dehydrogenase (GLUD) is an enzyme central to the glutamate and energy metabolism of the cell. In addition to the single, GLUD-encoding gene present in all mammals (GLUD1), humans and apes acquired a second GLUD gene (GLUD2) through retroduplication of GLUD1, which codes for an enzyme with unique, potentially brain-adapted properties. Here we show that whereas the GLUD1 parental protein localizes to mitochondria and the cytoplasm, GLUD2 is specifically targeted to mitochondria. Using evolutionary analysis and resurrected ancestral protein variants, we demonstrate that the enhanced mitochondrial targeting specificity of GLUD2 is due to a single positively selected glutamic acid-to-lysine substitution, which was fixed in the N-terminal mitochondrial targeting sequence (MTS) of GLUD2 soon after the duplication event in the hominoid ancestor ~18–25 million years ago. This MTS substitution arose in parallel with two crucial adaptive amino acid changes in the enzyme and likely contributed to the functional adaptation of GLUD2 to the glutamate metabolism of the hominoid brain and other tissues. We suggest that rapid, selectively driven subcellular adaptation, as exemplified by GLUD2, represents a common route underlying the emergence of new gene functions.
Comparative studies suggest that at least some bird species have evolved mental skills similar to those found in humans and apes. This is indicated by feats such as tool use, episodic-like memory, and the ability to use one´s own experience in predicting the behavior of conspecifics. It is, however, not yet clear whether these skills are accompanied by an understanding of the self. In apes, self-directed behavior in response to a mirror has been taken as evidence of self-recognition. We investigated mirror-induced behavior in the magpie, a songbird species from the crow family. As in apes, some individuals behaved in front of the mirror as if they were testing behavioral contingencies. When provided with a mark, magpies showed spontaneous mark-directed behavior. Our findings provide the first evidence of mirror self-recognition in a non-mammalian species. They suggest that essential components of human self-recognition have evolved independently in different vertebrate classes with a separate evolutionary history.
Since the late 1990s, the oak processionary moth, Thaumetopoea processionea (L.), has been occurring at high population densities in eastern Austria. Particularly, infestations in areas of human settlement have created increasing interest in this insect due to health problems caused by the urticating hairs of the larvae. New methods for biological control are desirable. Like essentially all forest Lepidoptera, T. processionea is host for entomopathogenic microsporidia. These obligatory parasitic protists have been evaluated as biocontrol agents against an other oak pest, Lymantria dispar (Weiser & Novotny, 1987; Jeffords & al., 1988). Life history traits of T. processionea make this insect an even more promising target for the use of microsporidia. The larvae are highly gregarious and stay together in nests made of larval silk for resting periods and molting. Microsporidia utilize several pathways for horizontal transmission that would be aided by these features: spores can be released after host death from cadavers as well as from living larvae via silk or feces. Additionally, many microsporidia are vertically transmitted (summarized in Maddox & al., 1998). In this project, T. processionea larvae from various regions in eastern Austria were screened for the natural occurrence of microsporidia. One isolate, Endoreticulatus sp., was further studied and mass produced in a laboratory host, L. dispar, that is easy to rear and does not pose a health hazard for people working with the insects. An inoculative release was attempted on isolated trees infested with T. processionea.
This paper discusses the so-called commercial approach to microfinance under economic and ethical aspects. It first shows how microfinance has developed from a purely welfare-oriented activity to a commercially relevant line of banking business. The background of this stunning success is the – almost universal – adoption of the so-called commercial approach to microfinance in the course of the last decade. As the author argues, this commercial approach is the only sound approach to adopt if one wanted microfinance to have any social and developmental impact, and therefore the wide-spread “moralistic” criticism of the commercial approach, which has again and again been expressed in the 1990s, is ill-placed from an economic and an ethical perspective. However, some recent events in microfinance raise doubts as to whether the commercial approach has not, in a number of cases, gone too far. The evident example for such a development is the Mexican microfinance institution Compartamos, which recently undertook a financially extremely successful IPO. As it seems, some microfinance institutions have by now become so radically commercial that all of those social and development considerations, which have traditionally motivated work in the field of microfinance, seem to have lost their importance. Thus there is a conflict between commercial and developmental aspirations. However, this conflict is not inevitable. The paper concludes by showing that, and how, a microfinance institution can try to combine using the strengths of the capital market and at the same time maintaining its developmental focus and importance.
Metaphorization and selected translation techniques : the case study of "National Geographic"
(2008)
Far greater liberties can be taken by animation than by live-action films The possibilities of the narratives are enriched by unrestricted visual images that offer unique means of exploring and portraying states of desire, conscious and unconscious realities, as well as different layers of relationships and experiences. This leads to a fusion of the traditional and modern roles of representation. Anime from acclaimed Japanese director Hayao Miyazaki, particularly the Academy Award winner Spirited Away (Sen to Chihiro no Kamikakushi, 2003) and Oscar-nominated Howl’s Moving Castle (Hauru no Ugoku Shiro, 2004), which in recent years have acquired a global cult status, offer new perspectives on human subjectivity. Through their playful use of the motif of transformation, striking similarities in the development of the plots and ambiguous dénouements, the movies problematize the fundamental question of identity, representing a close illustration of some of the core psychoanalytical concepts found in Lacanian theory.
The problem of vocalization, or diacritization, is essential to many tasks in Arabic NLP. Arabic is generally written without the short vowels, which leads to one written form having several pronunciations with each pronunciation carrying its own meaning(s). In the experiments reported here, we define vocalization as a classification problem in which we decide for each character in the unvocalized word whether it is followed by a short vowel. We investigate the importance of different types of context. Our results show that the combination of using memory-based learning with only a word internal context leads to a word error rate of 6.64%. If a lexical context is added, the results deteriorate slowly.
The epithelial absorbing cells of the small intestinal villi, the enterocytes, are the main protagonists for the transport of nutrients from the intestinal lumen to the interstitial fluids. The oriented flow of nutrients is carried out by different and complementary transport systems present in the apical and the basolateral domains of the enterocyte’s plasma membrane. One of the distinctive characteristics of those intestinal cells is the presence of numerous structurally distinct protrusions (referred as microvilli) on the apical surface of the plasma membrane. They confer the brush-like appearance of the microvillus border (commonly referred to as the "brush border") typically observed in the light microscope. Over the years, there has been considerable interest to study the molecular mechanisms driving the transport of molecules across the intestinal brush border membrane (BBM). Defects have been described to cause a variety of pathological conditions, such as disorders in the metabolism of saccharides (glucose and galactose malabsorption, lactose intolerance), amino acids (Hartnup disease, aminoacidurias), ions (sodium and potassium in the case of familiar diarrhea), metals (zinc in acrodermatitis enteropathica) and cholesterol lipids (cardiovascular diseases). In particular, the essential role of the BBM in regulating the delicate balance between cholesterol influx and efflux from the lumen to the enterocyte has been recently highlighted through the genetic analysis of individuals suffering of cholesterol disorders as well as in several clinical studies involving the use of dietary plant sterols (phytostrerols) or specific protein inhibitors blocking essential components of the cholesterol absorption/resorption pathway. ...
Arthropods use fluid medium motion-sensing filiform hairs on their exoskeleton to detect aerodynamic or hydrodynamic stimuli in their surroundings that affect their behaviour. The hairs, often of different lengths and organized in groups or arrays, respond to particular fluid motion amplitudes and frequencies produced by prey, predators, or conspecifics, even in the presence of background noise peculiar to the environment. While long known to biologists and experimentally investigated by them, it is only relatively recently that comprehensive physical-mathematical models have emerged offering an alternative methodology for investigating the biomechanics of filiform hair motion. These models have been developed and applied to quantitatively predict the performance characteristics of filiform hairs in air and water as a function of the relevant parameters that affect their physical behaviour. They even allow the exploration of possible biological evolutionary paths for filiform hair changes resulting from physical selection pressures. In this chapter we review the state of knowledge of filiform hair biomechanics and discuss two physical-mathematical models to predict hair dynamical behaviour. One modelling approach is analytically exact, serving for quantitative purposes, while the other, derived from it, is approximate, serving for qualitative guidance concerning the parameter dependencies of hair motion. Using these models we look in turn at the influence of these parameters and the fluid media physical properties on hair motion, including the possibility of medium-facilitated viscous coupling between hairs. The models point to areas where data is currently lacking and future research could be focused. In addition, new results are presented pertaining to transient tlows. We qualitatively explore the possibility of an overlapping water-air niches adaptation potential that may explain how, over many generations, the filiform hairs of an arthropod living in water could have evolved to function in air. Because flow-sensing hairs have served to inspire corresponding artificial medium motion microsensors, we discuss recent advances in this area. Significant challenges remain to be overcome, especially with respect to the materials and fabrication techniques used. In spite of the impressive technological advances made, nature still remains unrivalled.
Communication in the Web 2.0 context mainly works through images. The online video platform YouTube uses this form of visual communication and makes art forms of Western societies visible through their online videos. YouTube, as cultural reservoir and visual archive of moving images, accommodates the whole range of visualising creative processes – from artistic finger exercises to fine arts. A general characteristic of YouTube is the publishing of small everyday gestures of the ‘big ones’ (politicians, stars), like small incidents and their clumsiness in everyday actions, e.g. Beyonce´s fall from the stage or Tom Cruise’s demonic pro-scientology interview. Through their viral distribution on different platforms, these incidents will never be covered up or disappear from the public view. At the same time big gestures and star images are replicated and sometimes reinterpreted by the ‘small people’ who present themselves in the poses and attitudes of the stars. Generally, a coexistence of different perspectives is possible. YouTube allows polysemic and polyvalent views on the everyday and media phenomena. This article relies on YouTube research 2 that started in 2006 at the New Media Department of the Goethe University of Frankfurt. The results of the research have already presented representative forms and basic patterns, that is to say, categories for the clips appearing here. These kinds of clips, recurring in the observation period, have an impact on the basic representation of art or artistic expression within moving images on this platform. Methodologically the focus leads to the investigation (which has to be adequate to the specifics of the medium, or ‘media adequate’) of new visual structures and forms which can create – consciously or unconsciously – an art form. After focusing on the media structures, it will be discussed whether any and, if so, which ‘authentic’ new forms were developed solely on YouTube and whether these forms are innovative and can be characterised as avant-garde. This article first takes a small step in evaluating how to get from a general communication through means of visuality in web 2.0, an often endless chatty cheesy visual noise 3 – to the special quality of a consciously created aesthetic. From where do innovative aesthetic forms emerge, related to their media structures? 4 Are they the products of ‘media amateurs’ 5 or do we have to find new specifications and descriptions for the producers? The definition of a ‘media amateur’ describes technically interested private individuals who acquire and develop technology before commercial use of the technology is even recognisable. Just as artists are developing their own techniques, according to Dieter Daniels, media amateurs are autodidacts who invent techniques, rather than just acquire knowledge about them (see for example the demo scene, the machinima, brickfilm producers as well as many areas of computer gaming in general 6). The media amateur directly intervenes in the production processes of the medium and does not just simply use the medium. What is fascinating is the media amateur’s process of self education – not the result – and the direct impact on the internal structure and the control of the medium. 7 Media amateurs open a previously culturally unformed space of experience. This only partially applies to most of the YouTube clips in the realms of the visual arts; it is here most important to look at the visual content. This article discusses all these concepts and introduces new descriptions for the different forms of production: the technically oriented media master, the do-it-yourselfer, the tinkerer, the amateur handicraftsman and the inventor. It outlines a basic research project on ‘visual media culture’ (a triangulation of research on media structure and iconography) of the presented online video platform. It is a product of the analysis of clips focusing on the media structure, analyzing the creative handling of images and the deviations and differences of pre-set media formats and stereotypes.
Measuring financial asset return and volatilty spillovers, with application to global equity markets
(2008)
We provide a simple and intuitive measure of interdependence of asset returns and/or volatilities. In particular, we formulate and examine precise and separate measures of return spillovers and volatility spillovers. Our framework facilitates study of both non-crisis and crisis episodes, including trends and bursts in spillovers, and both turn out to be empirically important. In particular, in an analysis of nineteen global equity markets from the early 1990s to the present, we find striking evidence of divergent behavior in the dynamics of return spillovers vs. volatility spillovers: Return spillovers display a gently increasing trend but no bursts, whereas volatility spillovers display no trend but clear bursts.
The production of quarkonia, the bound state of an heavy quark with its anti-particle, has for a long time been seen as a key process to understand the properties of nuclear matter in a relativistic heavy-ion collision. This thesis presents studies on the production of quarkonia in heavy-ion collisions at the new Large Hadron collider (LHC). The focus is set on the decay of J/Psi and Upsilon-states into their di-electronic decay channel, measured within the central detectors of the ALICE detector.
Chlamydia are obligate intracellular bacteria that cause variety of human diseases. Host cells infected with Chlamydia are protected against many different apoptotic stimuli. The induction of apoptosis resistance is thought to be an important immune escape mechanism allowing Chlamydia to replicate inside the host cell. Infection with C. trachomatis activates the Raf/MEK/ERK pathway and the PI3K/AKT pathway. Here we show that inhibition of these two pathways by chemical inhibitors sensitized C. trachomatis infected cells to granzyme B-mediated cell death. Infection leads to the Raf/MEK/ERK-mediated up-regulation and PI3K-dependent stabilization of the anti-apoptotic Bcl-2 family member Mcl-1. Consistently, interfering with Mcl-1 up-regulation sensitized infected cells for apoptosis induced via the TNF receptor, DNA damage, granzyme B and stress. Our data suggest that Mcl-1 up-regulation is primarily required to maintain apoptosis resistance in C. trachomatis-infected cells.
Although gender and non-gender scholars have studied men, such an academic exercise requires a critical and focused study of masculine subjects in particular social contexts, which is what this book attempts to do. This empirically rich collection of essays, the seventh of the CODESRIA Gender Series, deals with critical examinations of various shades and ramifications of Africa's masculinities and what these portend for the peoples of Africa and for gender relations in the continent. So much has changed in terms of notions and expressions of masculinities in Africa since ancient times, but many aspects of contemporary masculinities were fashioned during and since the colonial period. The papers in this volume were initially discussed at the 2005 month-long CODESRIA Gender Institute in Dakar. The contributors are gender scholars drawn from various disciplines in the wide fields of the humanities and the social sciences with research interests in the critical study of men and masculinities in Africa. The CODESRIA Gender Series aims at keeping alive and nourishing the African social science knowledge base with insightful research and debates that challenge conventional wisdom, structures and ideologies that are narrowly informed by caricatures of gender realities. The series strives to showcase the best in African gender research and provide a platform for emerging new talents to flower.
Married But Available
(2008)
Married But Available ventures into a theme about which people say as much as they withhold. It explores intersections between sex, money and power, challenging orthodoxies, revealing complexities and providing insights into the politics and economics of relationships. During six months of fieldwork in Mimboland, Lilly Loveless, a Muzungulander doctoral student in Social Geography, researches how sex shapes and is shaped by power and consumerism in Africa. The bulk of her research takes place on the outskirts of the University of Mimbo, an institution where nothing is what it seems. Through her astounding harvest of encounters, interviews, conversations and observations, the reader gets a captivating glimpse into the frailty and resilience of human beings and society. Lilly Loveless comes out of it all well and truly baptized. And so does the reader!
Market uptake of pegylated interferons for the treatment of hepatitis C in Europe : meeting abstract
(2008)
Introduction and Objectives Hepatitis C virus (HCV) infection is a leading cause of chronic liver disease with life threatening sequelae such as end-stage liver cirrhosis and liver cancer. It is estimated that the infection annually causes about 86,000 deaths, 1.2 million disability adjusted life years (DALYs), and ¼ of the liver transplants in the WHO European region. Presently, only antiviral drugs can prevent the progression to severe liver disease. Pegylated interferons combined with ribavirin are considered as current state-of-the-art treatment. Objective of this investigation was to assess the market uptake of these drugs across Europe in order to find out whether there is unequal access to optimised therapy. Material and Methods We used IMS launch and sales data (April 2000 to December 2005) for peginterferons and ribavirin for 21 countries of the WHO European region. Market uptake was investigated by comparing the development of country-specific sales rates. For market access analysis, we converted sales figures into numbers of treated patients and related those to country-specific hepatitis C prevalence. To convert sales figures into patient figures, the amount of active pharmaceutical ingredients (API) sold was divided by average total patient doses (ATPD), derived by a probability tree-based calculation algorithm accounting for genotype distribution, early stopping rules, body weight, unscheduled treatment stops and dose reductions Ntotal=APIPegIFNalpha-2a/ATPDPegIFNalpha-2a+APIPegIFN&alpha-2b/ATPDPegIFNalpha-2b For more concise result presentation the 21 included countries were aggregated into four categories: 1. EU founding members (1957): Belgium, France, Germany, Italy and Netherlands; 2. Countries joining EU before 2000: Austria (1995), Denmark (1973), Finland (1995), Greece (1981), Republic of Ireland (1973), Spain (1986), Sweden and UK (1973) 3. Countries joining EU after 2000: Czech Republic (2004), Hungary (2004), Poland (2004) and Romania (2007); 4. EU non-member states: Norway, Russia, Switzerland and Turkey. Results Market launch and market uptake of the investigated drugs differed considerably across countries. The earliest, most rapid and highest increases in sales rates were observed in the EU founding member states, followed by countries that joined the EU before 2000, countries that joined the EU after 2000, and EU non-member states. Most new EU member states showed a noticeable increase in sales after joining the EU. Market access analysis yielded that until end of 2005, about 308 000 patients were treated with peginterferon in the 21 countries. Treatment rates differed across Europe. The number of patients ever treated with peginterferon per 100 prevalent cases ranged from 16 in France to less than one in Romania, Poland, Greece and Russia. Discussion Peginterferon market uptake and prevalence adjusted treatment rates were found to vary considerably across 21 countries in the WHO European region suggesting unequal access to optimised therapy. Poor market access was especially common in low-resource countries. Besides budget restrictions, national surveillance and prevention policy should be considered as explanations for market access variation. Although our results allowed for the ranking of countries in order of market access, no final conclusions on over- or undertreatment can be drawn, because the number of patients who really require antiviral treatment is unknown. Further research based on pan-European decision models is recommended to determine the fraction of not yet successfully treated but treatable patients among those ever diagnosed with HCV. ...
This paper discusses the effect of capital regulation on the risk taking behavior of commercial banks. We first theoretically show that capital regulation works differently in different market structures of banking sectors. In lowly concentrated markets, capital regulation is effective in mitigating risk taking behavior because banks' franchise values are low and banks have incentives to pursue risky strategies in order to increase their franchise values. If franchise values are high, on the other hand, the effect of capital regulation on bank risk taking is ambiguous as banks lack those incentives. We then test the model predictions on a cross-country sample including 421 commercial banks from 61 countries. We find that capital regulation is effective in mitigating risk taking only in markets with a low degree of concentration. The results remain robust after accounting for financial sector development, legal system effciency, and for other country and bank-specific characteristics. Keywords: Banks, market structure, risk shifting, franchise value, capital regulation
Gender studies in Zimbabwe have tended to focus on women and their comparative disadvantages and under-privilege. Assuming a broader perspective is necessary at a time when society has grown used to arguments rooted in binaries: colonised and coloniser, race and class, sex and gender, poverty and wealth, patriotism and terrorism, etc. The editors of Manning the Nation recognise that concepts of manhood can be used to repress or liberate, and will depend on historical and political imperatives; they seek to introduce a more nuanced perspective to the interconnectivity of patriarchy, masculinity, the nation, and its image. The essays in this volume come from well-respected academics working in a variety of fields. The ideals and concepts of manhood are examined as they are reflected in important Zimbabwean literary texts. However, if literature provides a rich vein for the analysis of masculinities, what makes this collection so interesting is the interplay of literary analysis with chapters that provide a critical examination of the ways in which ideals of manhood have been employed in, for example, leadership and the nation, as a justification for violent engagement, in the field of AIDS and HIV, etc. Manning the Nation: Father figures in Zimbabwean literature and society sets the stage for a fresh and engaging discourse essential at a time when new paradigms are needed.
Infliximab is a monoclonal antibody directed against TNF-alpha. It has been approved for use in rheumatoid arthritis, ankylosing spondylitis, inflammatory bowel disease, psoriatic arthritis and plaque-type psoriasis. In case reports, positive effects on pustular variants of psoriasis have also been reported. However, paradoxically, manifestation of pustular psoriasis and plaque-type psoriasis has been reported in patients treated with TNF antagonists including infliximab for other indications. Here, we report on 5 patients with chronic plaque-type psoriasis who developed palmoplantar pustulosis during or after discontinuation of infliximab therapy. In two of the five cases, manifestation of palmoplantar pustulosis was not accompanied by worsening of plaque-type psoriasis. Possibly, site-specific factors or a differential contribution of immunological processes modulated by TNF inhibitors to palmoplantar pustulosis and plaque-type psoriasis may have played a role.
Pidgin English is the chief medium of communication for the great majority of Cameroonians. It sustains a world view, culture and way of life. Pidgin embodies concepts that would at best be partially expressed in formal English. A critical understanding of Pidgin English requires not only a thorough grasp of the socio-cultural matrix from which the words and expressions originate but also an immersion in an Afro-centric worldview. Majunga Tok: Poems in Pidgin English is the poet's attempt at capturing these speech patterns of ordinary Cameroonians in written form. Pidgin English, also called broken English, is a lingua franca spoken not only in Cameroon but also in many West African countries, including Nigeria, Ghana, Sierra Leone and Liberia amonst others. This poetry anthology is inspired by the poet's desire to salvage a language that has been subjected to multiple forms of denigration because it is oral. In Cameroon, for instance, Pidgin English has been the target of myriad attacks from self-styled linguistic purists who claim that Pidgin is a bastardized variant of Standard English and, therefore, should not be allowed to thrive. The controversy and denigration directed at Amos Tutuola and his Pidgin English creative genius are vivid examples. This condescending attitude of speakers of Standard English stems from the fact that Pidgin is often associated with illiteracy.
This work is devoted to the description of mechanisms that might be responsible for avian magnetoreception. Two possible theoretical concepts underlying this phenomenon are formulated and their functionality is proven in realistic geomagnetic fields. It has been suggested that the "magnetic sense" in birds may be mediated by the blue light receptor protein- cryptochrome- which is known to be localized in the retinas of migratory birds. Cryptochromes are a class of photoreceptor signaling proteins that are found in a wide variety of organisms and which primarily perform regulatory functions, such as the entrainment of circadian rhythm in mammals and the inhibition of hypocotyl growth in plants. Recent experiments have shown that the activity of cryptochrome-1 in Arabidopsis thaliana is enhanced by the presence of a weak external magnetic field, confirming the ability of cryptochrome to mediate magnetic field responses. Cryptochrome's signaling is tied to the photoreduction of an internally bound chromophore, flavin adenine dinucleotide (FAD). The spin chemistry of this photoreduction process, which involves electron transfer from a chain of three tryptophans, is modulated by the presence of a magnetic field in an effect known as the radical pair mechanism. Cryptochrome was suggested as a possible magnetoreceptor for the first time in 2000. However, no realistic calculations of the magnetic field effect in cryptochrome were performed. One of the goals of the present thesis is computationally to study the electron spin dynamics in cryptochrome and to show the feasibility of a cryptochrome-based compass in birds. In particular, the activation yield of cryptochrome was studied as a function of an external magnetic field and it was shown that the activation of the protein can be influenced by the geomagnetic field. In the work it has also been proven that cryptochrome provides an inclination compass, which is necessary for bird orientation. The evolution of spin densities as a function of time is also discussed. An alternative mechanism of avian magnetoreception discussed in the thesis is based on the interaction of two iron minerals (magnetite and maghemite) which were only recently found in subcellular compartments within the sensory dendrites of the upper beak of several bird species. The iron minerals in the beak form platelets of crystalline maghemite and assemblies of magnetite nanoparticles (magnetite clusters). The interaction between these particles can be manipulated by an external magnetic field inducing a primary receptor potential via strain-sensitive membrane channels that lead to a certain bird orientation effect. Various properties of the magnetite/maghemite magnetoreceptor system have been considered: the potential energy surface of the magnetite cluster has been calculated and analyzed as a function of the orientation of an external magnetic field; the forces acting on the magnetite cluster were calculated and analyzed; the force differences caused by the change of the direction of external magnetic field were established; the probability of opening the mechanosensitive ion channel was calculated. Finally it has been demonstrated that the iron-mineral based magnetoreceptor provides a polarity magnetic compass. Various conditions at which the magnetoreception process is violated are outlined.
Dilepton production in pp and Au+Au nucleus–nucleus collisions at s=200GeV as well as in In+In and Pb+Au at 158AGeV is studied within the microscopic HSD transport approach. A comparison to the data from the PHENIX Collaboration at RHIC shows that standard in-medium effects of the ρ,ω vector mesons—compatible with the NA60 data for In+In at 158AGeV and the CERES data for Pb+Au at 158AGeV—do not explain the large enhancement observed in the invariant mass regime from 0.2 to 0.5 GeV in Au+Au collisions at s=200 GeV relative to pp collisions.
The Peak Range (22˚ 28’ S; 147˚ 53’ E) is an archipelago of rocky peaks set in grassy basalt rolling-plains, east of Clermont in central Queensland. This report describes the flora and vegetation based on surveys of 26 peaks. The survey recorded all plant species encountered on traverses of distinct habitat zones, which included the ‘matrix’ adjacent to each peak. The method involved effort comparable to a general flora survey but provided sufficient information to also describe floristic association among peaks, broad habitat types, and contrast vegetation on the peaks with the surrounding landscape matrix. The flora of the Peak Range includes at least 507 native vascular plant species, representing 84 plant families. Exotic species are relatively few, with 36 species recorded, but can be quite prominent in some situations. The most abundant exotic plants are the grass Melinis repens and the forb Bidens bipinnata. Plant distribution patterns among peaks suggest three primary groups related to position within the range and geology. The Peak Range makes a substantial contribution to the botanical diversity of its region and harbours several endemic plants among a flora clearly distinct from that of the surrounding terrain. The distinctiveness of the range’s flora is due to two habitat components: dry rainforest patches reliant upon fire protection afforded by cliffs and scree, and; rocky summits and hillsides supporting xeric shrublands. Plants endemic to the Peak Range are mainly associated with the latter of these habitats.
Long Time Coming brings together short stories and poems from thirty-three writers that provide snapshots of this turbulent period in Zimbabwe's history. Snapshots of living in a country where basic services have crumbled: where shops have no food, taps no water, banks no money, hospitals no drugs, bars no beer. Snapshots of characters surviving against seemingly insurmountable odds. Horrific snapshots of the abuse of power, of violence and oppression, of the destruction of dreams. But this is Zimbabwe and there are lighter moments and moments of hope: in some of life's simple pleasures, in the coming of the rains, in the wink and the smile of a stranger, in a challenge to patriarchy, in the inner strength of the people, in fighting back. The writers are Raisedon Baya, Wim Boswinkel, Diana Charsley, Brian Chikwava, Julius Chingono, Mathew Chokuwenga, Bhekilizwe Dube, John Eppel, Peter Finch, Petina Gappah, David Goodwin, Anne Simone Hutton, Monireh Jassat, Ignatius Mabasa, Fungai Rufaro Machirori, Judy Maposa, Deon Marcus, Christopher Mlalazi, Gothataone Moeng, Wame Molefhe, Linda Msebele, Mzana Mthimkhulu, Peter Ncube, Thabisani Ndlovu, Pathisa Nyathi, Andrew Pocock, John S. Read, Bryony Rheam, Lloyd Robson, Ian Rowlands, Owen Sheers, Chaltone Tshabangu and Sandisile Tshuma.
Location and orientation of serotonin receptor 1a agonists in model and complex lipid membranes
(2008)
Magic angle spinning (MAS) NMR has been used to investigate the location and orientation of five serotonin receptor 1a agonists (serotonin, buspirone, quipazine, 8-OH-DPAT, and LY-163,165) in single component model lipid and brain lipid membranes. The agonist locations are probed by monitoring changes in the lipid proton chemical shifts and by MAS-assisted nuclear Overhauser enhancement spectroscopy, which indicates the orientation of the agonists with respect to the 1,2-dioleoyl-sn-glycero-3-phosphocholine lipids. In the single component bilayer, the membrane agonists are found predominantly in the top of the hydrophobic chain or in the glycerol region of the membrane. Most of the agonists orient approximately parallel to the membrane plane, with the exception of quipazine, whose piperazine ring is found in the glycerol region, whereas its benzene ring is located within the lipid hydrophobic chain. The location of the agonist in brain lipid membranes is similar to the 1,2-dioleoyl-sn-glycero-3-phosphocholine lipid bilayers; however, many of the agonists appear to locate close to the cholesterol in the membrane in preference to the phospholipids.