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Using molecular tools to differentiate closely related blackfly species of the genus Simulium
(2008)
Biodiversity data are the foundation for conservation and managemet and taxonomy provides the reference system, skills and tools used to identify organisms. Species level data such as species richness, composition and diversity are common metrics. However, species level identification of organisms tends to be neglected within ecological work, especially within monitoring programmes, but also in conservation biology (Giangrande, 2003). This is because collection of species level data is time consuming, with identification of species-specific characteristics traditionally involving lengthy examination of samples using microscopy. In addition it is costly and species level data is almost impossible to collect if the taxa involved are species rich and difficult to identify (Báldi 1999). Other reasons why species level identification is neglected include the fact that sample collection can damage organisms, so diagnostic morphological features are lost, or that individuals may be in a life history stage or of a sex that does not have diagnostic morphological characteristics. Furthermore, the numbers of available expert taxonomists needed for species identification are in decline and have been for several decades. Species identification using molecular taxonomy where DNA is used as a marker is championed as a tool for resolving a range of morphological problems, such as the association of all life history stages, correlating male and female specimens to the same species and identifying partial specimens. Traditional taxonomy is built around morphological variations between species, with systematic inferences based upon shared physical characters. In molecular taxonomy on the other hand, proteins and genes are used to determine evolutionary relationships. ’DNA barcoding’ aims to provide an efficient method for species-level identification and it is thought that it will provide a powerful tool for taxonomic and biodiversity research (Hajibabaei et al. 2007). Cited strengths of a molecular based approach to species identification include the potential universality and objective nature of DNA data as taxonomic information, the usefulness of molecular data in animal groups characterized by morphological cryptic characters and the use of DNA sequence information to determine otherwise ‘unidentifiable’ biological material (such as incomplete specimens or immature specimens). Its aim is to increase the speed, precision and efficiency of field studies involving diverse and difficult to identify taxa and it has the potential to be automated to provide a rapid and consistently accurate supplementary identification system to traditional taxonomy. This project was a proof-of-concept study that investigated the feasibility of using DNA barcodes to differentiate closely related blackfly species of the genus Simulium. The longer term objective would be to apply such molecular approaches to organisms used in water quality monitoring and to biodiversity studies to provide a quick, robust but practical and cost effective tool for species identification. Great Britain is currently home to 33 morphospecies of blackfly many of which are morphologically close to other species and have been the cause of much systematic revision. In addition to evaluating the use of DNA barcodes in species identification, a non-destructive DNA extraction method was developed to preserve voucher pecimens that will allow a complete morphological classification to be carried after DNA extraction. Using molecular tools to differentiate closely related blackfly species of the genus Simulium v Finding an effective DNA barcode for an individual species involves accurate taxonomic identification and the retention of voucher specimens for future morphological studies. A rapid non-destructive method for DNA extraction from small insects was developed where no clean-up step was required prior to amplification and it was possible to extract DNA of sufficient quality in minutes retaining diagnostic morphological characteristics. For any molecular tool used for species discrimination, an important consideration is defining the specific genetic loci (e.g. the position of genes on a chromosome) to be monitored. All blackfly species in this study were successfully amplified with the standard barcoding coxI gene primer pair LCO1490 5'-GGT CAA CAA ATC ATA AAG ATA TTG G-3' and HCO2198 5'-TAA ACT TCA GGG TGA CCA AAA AAT CA-3' (Folmer et al. 1994) and we did not need to optimise or redesign the primer sequence.
The dissertation, ”Coping with emergent hearing loss”, is written in English and is based on the diversity of problems connected to hearing loss and the adaptation of hearing aids. The research was carried out in Denmark and involves adults with an emergent hearing loss, who have decided to become hearing aid users. The data is analyzed through methods of cultural anthropology with focus on the following topics: How do the new users cope with the status passage towards being hearing aid users, how do they integrate the hearing aids into their lives, and what are the involved learning processes. What are the consequences of the provision by the state of free hearing aids, their free adaptation as well as free batteries, and does the state take part in the construction of the social group of new hearing aid users? The method is based on qualitative field work. Two public hospitals were helpful in identifying 24 new users, who acquired a free hearing aid through the hearing health care system. Through ENTs and private dispensers 17 further respondents joined the study – these acquired their hearing aids with a considerable state subsidy but mostly they themselves contributed financially as well. The 41 respondents between the ages of 42 to 92 years of age came from a wide range of professions and were followed throughout 2003 und 2004. After an in-depth qualitative interview, the contact to the respondents was maintained in order to follow the process of integration into their lives. When possible, the respondents were accompanied to their appointments in the private or public clinics. Moreover, interviews with experts from the public hearing health care system, politicians and user organisations were carried out, and the general public debate on the hard of hearing and hearing loss was followed and recorded. The second chapter gives an overview of the position of audiology in Denmark, of epidemiological information on hearing loss in the Danish society and statistics to the use of hearing aids. Moreover, basic information is given about the functioning of the human ear, the auditive perception and diagnosis and classification of hearing loss as well as a short introduction to the hearing aid technology. The structure of the further thesis divides the material into three pillars that make the discussion of the interaction processes possible. (1) The user’s interaction with the lifeworld concerns the meaning of hearing in relation to social participation. For some of the users, a good sense of hearing was essential to communicate freely and uphold their position in relation to others, whereas other respondents paid less attention to the information they acquired through their sense of hearing. A number of the respondents were selective and only used their hearing aids in specific situations, whereas another group discontinued the use of their hearing aids for various reasons. Status passages that hold specific challenges like a new work place or a new marriage motivate the continued everyday use. On the whole, the thesis illustrates that hearing loss is a socially dividing factor that complicates the interaction with others. In comparison to other bodily impairments or diseases, the hearing loss is rarely used as occasion to unite with fellow sufferers, join patient organisations or form self help groups. (2) The users’ interaction with the institutions The medical anthropologist Arthur Kleinman conceptualises health care as a moral process in which essential issues are at stake for the users. Different factors interact in the process: the training of the experts, allocation of funds, the quality of the technology, the dispensing procedures and the motivation and individual characteristics of the new users. The integration of the hearing aid into the lifeworld can be compared to a learning process, for which reason the learning theory of the anthropologist Gregory Bateson is outlined. Susanne Bisgaard’s own theory lists the meaning creating elements that serve as motivation for the users to counteract contingency (occurrences that influence the adaptation negatively). In the interaction between individual and society, the individual can apply strategies in order to eliminate stumbling blocks. (3) The users’ interaction with the technology A number of theorists from Anthropology as well as Science and Technology Studies are discussed in order to question their validity with regard to human action autonomy vs. technological determination and test the theoretical models with regard to their usability for the thesis. Hearing aids have a supporting function in everyday life and have the capability of moderating the user’s perception of sound. The alienating experience of hearing one’s own voice amplified, of wearing a foreign body in the ear and the different strategies that emerge from the more or less successful handling of the technology is reported by way of case stories and quotes from the interviews.
We study the effect of randomness in the adversarial queueing model. All proofs of instability for deterministic queueing strategies exploit a finespun strategy of insertions by an adversary. If the local queueing decisions in the network are subject to randomness, it is far from obvious, that an adversary can still trick the network into instability. We show that uniform queueing is unstable even against an oblivious adversary. Consequently, randomizing the queueing decisions made to operate a network is not in itself a suitable fix for poor network performances due to packet pileups.
This work presents the study on the suitability of single-crystal CVD diamond for particle-detection systems in present and future hadron physics experiments. Different characterization methods of the electrical and the structural properties were applied to gain a deeper understanding of the crystal quality and the charge transport properties of this novel semiconductor material. First measurements regarding the radiation tolerance of diamond were performed with sensors heavily irradiated with protons and neutrons. Finally, detector prototypes were fabricated and successfully tested in various experiments as time detectors for minimum ionizing particles as well as for spectroscopy of heavy ions at the energy ranges available at the SIS and the UNILAC facilities of GSI. ...
5-LO is the key enzyme in the biosynthesis of proinflammatory leukotrienes. It catalyses the conversion of arachidonic acid to the hydroperoxy intermediate 5(S)-hydroperoxy-6- trans-8,11,14-cis-eicosatetraenoic acid (5-HpETE). In a second step 5-LO catalyses a dehydration reaction forming the unstable epoxide intermediate 5(S)-trans-5,6-oxido-7,9- trans-11,14-cis-eicosatetraenoic acid (leukotriene A4 , LTA4). The 5-LO gene is subjected to versatile regulation mechanisms. Apart from regulation by DNA-methylation and histone acetylation / deacetylation 5-LO gene expression can be regulated by the differentiation inducers calcitriol (1,25-dihydroxyvitamin D3) and transforming growth factor beta (TGFβ) 5-LO gene expression. In the myeloid cell lines Mono Mac 6 (MM6) and HL-60, differentiation with both agents caused a prominent upregulation of 5-LO mRNA level, of 5-LO protein expression and of 5-LO activity. Treatment with calcitriol alone already has an impact on 5-LO gene expression which is additionally potentiated by TGFβ treatment. Previous nuclear run-off analysis and reporter gene analysis could not associate the 5-LO promoter with the induction of 5-LO mRNA expression mediated by calcitriol and TGFβ. Inclusion of the 5-LO coding sequence (cds) and inclusion of the 5-LO cds plus the last four introns of the gene (J to M) in the 5-LO promoter construct pN10 led to an enhanced reporter gene activity. The inductions were dependent on vitamin D receptor (VDR) and retinoid x receptor (RXR) cotransfection. Therefore the work was concentrated on identifying elements outside the 5-LO promoter region which contribute to the calcitriol / TGFβ effect on 5-LO mRNA expression. Insertion of the LTA4 hydrolase coding sequence – a coding sequence of similar size - instead of the 5-LO cds led to a loss of the calcitriol / TGFβ effect (pN10LTA4Hcds 1-fold induction). Therewith, it was proven that the presence of the 5-LO cds is crucial for the upregulating effect of calcitriol / TGFβ on 5-LO mRNA level. Cloning of the SV40 promoter instead of pN10 upstream of the 5-LO cds still showed inducibility by treatment with the inducers which argues for a promoter unspecific effect. Insertion of the 5-LO cds in a promoterless basic vector (pGL3cds) displayed same inductions by calcitriol / TGFβ treatment as the 5-LO promoter 5-LO cds construct (pN10cds). Thus, the effect of the inducers is not dependent on the 5-LO promoter under the in vitro conditions of the reporter gene assay. Hence, further cloning was done with promoterless constructs. Through 5-LO cds deletion constructs a positive regulating region in exon 10 to 14 was discovered. To adapt the natural gene context the last four introns (J-M) of the 5-LO gene were inserted in a promoterless construct containing exon 10 to 14 (pGL3cdsΔABInJM). 5end deletion constructs of it revealed putative vitamin D responsive elements (VDREs) in exon 12 and intron M. Mutation of the putative VDREs led to a reduced calcitriol effect –more prominent when the putative VDRE in intron M was mutated (reduction of 40%). Moreover another putative VDRE in exon 10 with an adjacent SMAD binding element (SBE) was detected. SMAD proteins are effector proteins of TGFβ signalling. Gelshift experiments demonstrated in vitro binding of the VDR-RXR heterodimer to those three putative VDREs. By chromatin immunoprecipitation (ChIP) assay in vivo binding of VDR and RXR was shown to the VDRE in the region of exon 10, exon 12 and intron M. 8h and 24h incubation with calcitriol / TGFβ resulted in enhanced expression of VDR in each of the examined regions. The VDR is able to bind to the VDRE without its ligand, whereas this goes along with corepressor recruitment and thus the VDR has a repressive effect on transcription. Histone H4 acetylation was increased when MM6 cells were treated for 8h or 24h with calcitriol or the combination of calcitriol / TGFβ. This finding implies that at that point of time corepressors associated with the VDR are replaced by coactivators. It seems convincing that 5-LO transcription is mainly promoted by calcitriol alone which leads to a more accessible chromatin structure. Previous data indicated that calcitriol and TGFβ upregulate 5-LO RNA maturation and 5- LO transcript elongation. Thus several elongation markers were investigated by ChIP analysis: Histone H3 lysine 36 (H3K36) trimethylation and H4K20 monomethylation were detected in the analysed regions in exon 10, exon 12 and intron M. In region exon 10 the H3K36 trimethylation status was enhanced after 24h calcitriol or calcitriol / TGFβ treatment. An increased H4K20 monomethylation status in all regions was observed when MM6 cells were treated for 24h with calcitriol / TGFβ. 24h treatment with both agents also enhanced the recruitment of the elongation form of RNA polymerase II, which is phosphorylated at serine 2 of the carboxyterminal domain, to the investigated regions. These findings prove the positive regulating role for calcitriol and TGFβ on 5-LO transcript elongation. A putative mechanism of the effect of calcitriol and TGFβ on 5-LO RNA maturation might be the elevated phosphorylation of serine 2 of the RNA Polymerase II which is known to be followed by recruiting polyadenylating factors.
Owing to higher performance on the Raven’s Progressive Matrices (RPM) than on the Wechsler Intelligence Scales (WIS), it has recently been argued that intelligence is underestimated in autism. This study examined RPM and WIS IQs in 48 individuals with autism, a mixed clinical (n = 28) and a neurotypical (n = 25) control group. Average RPM IQ was higher than WIS IQ only in the autism group, albeit to a much lesser degree than previously reported and only for individuals with WIS IQs <85. Consequently, and given the importance of reliable multidimensional IQ estimates in autism, the WIS are recommended as first choice IQ measure in high functioning individuals. Additional testing with the RPM might be required in the lower end of the spectrum.
Purim and parodies
(2008)
The Chanukah omission
(2008)
We highlight the implications of combining underwriting services and lending for the choice of underwriters and for competition in the underwriting business. We show that cross-selling can increase underwriters’ incentives, and we explain three phenomena: first, that cross-selling is important for universal banks to enter the investment banking business; second, that cross-selling is particularly attractive for highly leveraged borrowers; third, that less-than-market rates are no prerequisite for cross-selling to benefit a bank’s clients. In our model, cross-selling reduces rents in the underwriting business.
Several regions in human temporal and frontal cortex are known to integrate visual and auditory object features. The processing of audio–visual (AV) associations in these regions has been found to be modulated by object familiarity. The aim of the present study was to explore training-induced plasticity in human cortical AV integration. We used functional magnetic resonance imaging to analyze the neural correlates of AV integration for unfamiliar artificial object sounds and images in naïve subjects (PRE training) and after a behavioral training session in which subjects acquired associations between some of these sounds and images (POST-training). In the PRE-training session, unfamiliar artificial object sounds and images were mainly integrated in right inferior frontal cortex (IFC). The POST-training results showed extended integration-related IFC activations bilaterally, and a recruitment of additional regions in bilateral superior temporal gyrus/sulcus and intraparietal sulcus. Furthermore, training-induced differential response patterns to mismatching compared with matching (i.e., associated) artificial AV stimuli were most pronounced in left IFC. These effects were accompanied by complementary training-induced congruency effects in right posterior middle temporal gyrus and fusiform gyrus. Together, these findings demonstrate that short-term cross-modal association learning was sufficient to induce plastic changes of both AV integration of object stimuli and mechanisms of AV congruency processing.
The dissertation deals with the general problem of how the brain can establish correspondences between neural patterns stored in different cortical areas. Although an important capability in many cognitive areas like language understanding, abstract reasoning, or motor control, this thesis concentrates on invariant object recognition as application of correspondence finding. One part of the work presents a correspondence-based, neurally plausible system for face recognition. Other parts address the question of visual information routing over several stages by proposing optimal architectures for such routing ('switchyards') and deriving ontogenetic mechanisms for the growth of switchyards. Finally, the idea of multi-stage routing is united with the object recognition system introduced before, making suggestions of how the so far distinct feature-based and correspondence-based approaches to object recognition could be reconciled.
Background Brain-computer interface methodology based on self-regulation of slow-cortical potentials (SCPs) of the EEG (electroencephalogram) was used to assess conditional associative learning in one severely paralyzed, late-stage ALS patient. After having been taught arbitrary stimulus relations, he was evaluated for formation of equivalence classes among the trained stimuli. Methods A monitor presented visual information in two targets. The method of teaching was matching to sample. Three types of stimuli were presented: signs (A), colored disks (B), and geometrical shapes (C). The sample was one type, and the choice was between two stimuli from another type. The patient used his SCP to steer a cursor to one of the targets. A smiley was presented as a reward when he hit the correct target. The patient was taught A-B and B-C (sample – comparison) matching with three stimuli of each type. Tests for stimulus equivalence involved the untaught B-A, C-B, A-C, and C-A relations. An additional test was discrimination between all three stimuli of one equivalence class presented together versus three unrelated stimuli. The patient also had sessions with identity matching using the same stimuli. Results The patient showed high accuracy, close to 100%, on identity matching and could therefore discriminate the stimuli and control the cursor correctly. Acquisition of A-B matching took 11 sessions (of 70 trials each) and had to be broken into simpler units before he could learn it. Acquisition of B-C matching took two sessions. The patient passed all equivalence class tests at 90% or higher. Conclusion The patient may have had a deficit in acquisition of the first conditional association of signs and colored disks. In contrast, the patient showed clear evidence that A-B and B-C training had resulted in formation of equivalence classes. The brain-computer interface technology combined with the matching to sample method is a useful way to assess various cognitive abilities of severely paralyzed patients, who are without reliable motor control.
The epithelial absorbing cells of the small intestinal villi, the enterocytes, are the main protagonists for the transport of nutrients from the intestinal lumen to the interstitial fluids. The oriented flow of nutrients is carried out by different and complementary transport systems present in the apical and the basolateral domains of the enterocyte’s plasma membrane. One of the distinctive characteristics of those intestinal cells is the presence of numerous structurally distinct protrusions (referred as microvilli) on the apical surface of the plasma membrane. They confer the brush-like appearance of the microvillus border (commonly referred to as the "brush border") typically observed in the light microscope. Over the years, there has been considerable interest to study the molecular mechanisms driving the transport of molecules across the intestinal brush border membrane (BBM). Defects have been described to cause a variety of pathological conditions, such as disorders in the metabolism of saccharides (glucose and galactose malabsorption, lactose intolerance), amino acids (Hartnup disease, aminoacidurias), ions (sodium and potassium in the case of familiar diarrhea), metals (zinc in acrodermatitis enteropathica) and cholesterol lipids (cardiovascular diseases). In particular, the essential role of the BBM in regulating the delicate balance between cholesterol influx and efflux from the lumen to the enterocyte has been recently highlighted through the genetic analysis of individuals suffering of cholesterol disorders as well as in several clinical studies involving the use of dietary plant sterols (phytostrerols) or specific protein inhibitors blocking essential components of the cholesterol absorption/resorption pathway. ...
Background Titanium and titanium alloys are widely used for fabrication of dental implants. Since the material composition and the surface topography of a biomaterial play a fundamental role in osseointegration, various chemical and physical surface modifications have been developed to improve osseous healing. Zirconia-based implants were introduced into dental implantology as an altenative to titanium implants. Zirconia seems to be a suitable implant material because of its tooth-like colour, its mechanical properties and its biocompatibility. As the osseointegration of zirconia implants has not been extensively investigated, the aim of this study was to compare the osseous healing of zirconia implants with titanium implants which have a roughened surface but otherwise similar implant geometries. Methods Forty-eight zirconia and titanium implants were introduced into the tibia of 12 minipigs. After 1, 4 or 12 weeks, animals were sacrificed and specimens containing the implants were examined in terms of histological and ultrastructural techniques. Results Histological results showed direct bone contact on the zirconia and titanium surfaces. Bone implant contact as measured by histomorphometry was slightly better on titanium than on zirconia surfaces. However, a statistically significant difference between the two groups was not observed. Conclusion The results demonstrated that zirconia implants with modified surfaces result in an osseointegration which is comparable with that of titanium implants.
The respiratory chain is composed of protein complexes residing in the inner mitochondrial membrane of eukaryotes or in the cytoplasmic membrane of prokaryotes. This cellular energy converter transforms a redox potential stored in low potential substrates into an electrochemical potential across the respective membrane. Typical respiratory chains contain the complexes I, II, III and IV named according to their sequence in the respiratory chain reaction. Electrons of low potential substrates enter at complex I or II and are passed via complex III to complex IV where they are transferred to oxygen. The transport of electrons between the complexes is mediated by small electron shuttles like quinol or cytochrome c. Two different models describe their exchange either by (1) random collision of freely diffusible electron shuttles and membrane protein complexes or (2) arrangement of the complexes in supercomplexes enabling direct channeling of electron shuttles. In the Gram positive bacterium Corynebacterium glutamicum, the complex III to complex IV electron shuttle cytochrome c is not diffusible but a covalently bound part of the diheme cytochrome subunit QcrC of complex III. Therefore, the complexes III and IV have to form a supercomplex for electron transduction. The aim of this thesis was to purify and characterise this obligatory supercomplex III/IV of C. glutamicum. To gain sufficient biomass of C. glutamicum as starting material for purification, a phosphate buffered minimal medium was developed that enabled yield of total 120 g wet cell mass (38 g dry mass) in 12 L (6×2 L) shaking cultures. The determined conversion factor of glucose into biomass was 0.46 g/g indicating an intact respiratory chain. The yield was increased by bioreactor cultivation to ~690 g wet cell mass (~220 g dry mass) in ~10 L culture volume. A previously described homologous expression system was applied that produces the complex IV subunit CtaD with a fused Strep-tag II to facilitate purification. Affinity purifications using the Strep-tag II affinity to Strep-Tactin resin yielded a mixture of complexes and supercomplexes. Two supercomplex III/IV versions named supercomplex A and B and free complex IV were identified in this mixture by size exclusion chromatography, redox difference spectroscopy and two dimensional polyacrylamide gel electrophoresis including blue native polyacrylamide electrophoresis. The here presented downscaled blue native polyacrylamide electrophoresis method with analysis times of ~1 h enabled efficient screening of factors influencing the stability of supercomplex III/IV. The screening resulted that the integrity of supercomplex III/IV is preserved by using neutral detergents at minimal detergent to protein ratios for solubilisation and low detergent concentrations for purification and storage slightly above the required critical micellar concentration. Furthermore, pH <=7.5 is required for stability of supercomplex III/IV. Large biomass yields enabled upscaling of supercomplex III/IV affinity purification. Application of the identified stability conditions resulted in affinity purified samples free of supercomplex B. The major component supercomplex A was efficiently separated from residual free complex IV by preparative size exclusion chromatography. Concentration of purified supercomplex A by ultracentrifugation resulted in integrity of the supercomplex for several days at 4 °C. Purified supercomplex A contains ten different previously described subunits. The heme content of supercomplex A relative to the protein mass is heme A: 6.0 μmol/g, heme B: 6.5 μmol/g, and heme C: 5.8 μmol/g determined by redox difference spectroscopy and biochemical protein quantification. This indicates an equimolar ratio of complex III and complex IV in supercomplex A. Supercomplex A has quinol oxidase activity that is inhibited by stigmatellin or sodium azide. The turnover number of transferred electrons per complex III monomer is 148 s−1 at 25° C. The homogeneity and stability of the prepared supercomplex A enabled the growth of threedimensional crystals of up to 0.1 mm in length. Their composition of supercomplex A was verified by redox difference spectroscopy of intact crystals and blue native polyacrylamide electrophoresis of dissolved crystals. The crystals diffracted X-rays corresponding to a resolution of ~10 Å. Electron microscopy of negative stained samples revealed the uniform shape of purified supercomplex A particles with dimensions of 22 × 9 nm in the view plane. Combined heme quantification, size determination, determined activity, symmetry considerations, and particle shape indicate that supercomplex A has a central dimer of complex III and two monomers of complex IV on opposite sides. This conformation is functionally reasonable because it provides each complex III monomer with one complex IV monomer as electron acceptor. Therefore, the stoichiometry of supercomplex A is most likely III2IV2. The sensitivity of supercomplex A to detergents indicated a role of phospholipids in its stability. Therefore, a method for phospholipid identification and quantification was developed that is suitable for detergent solubilised crude and purified membrane protein samples. The analysis combines separation of phospholipid classes according to their head group by normal phase high performance liquid chromatography with evaporative light scattering detection. Calibration with external standard allows quantification of phospholipid amount in the range of 0.25-12 μg. The method is verified by analysing the phospholipid content of the well characterised complex III of Saccharomyces cerevisiae. The reduction of its phospholipid content during its purification steps is monitored. The complex III sample purified to crystallisation quality contains the phospholipid content that was also observed in previously reported structures determined by X-ray crystallography. Purified stable supercomplex A from C. glutamicum revealed a large content of bound phospholipids. The main differences between intact supercomplex A and a mixture of potentially disintegrated smaller complexes is that intact supercomplex A has a doubled phosphatidic acid content and an increased phosphatidyl glycerol content. The importance of the small anionic phosphatidic acid for mediation of contacts between complexes in a supercomplex is discussed. The total phospholipid content of stable supercomplex A is sufficient for a complete belt surrounding the supercomplex in the membrane plane. This indicates that also all essential internal phospholipid binding positions are occupied and potentially stabilise supercomplex A.
Background Osseointegration is crucial for the long-term success of dental implants and depends on the tissue reaction at the tissue-implant interface. Mechanical properties and biocompatibility make zirconia a suitable material for dental implants, although surface processings are still problematic. The aim of the present study was to compare osteoblast behavior on structured zirconia and titanium surfaces under standardized conditions. Methods The surface characteristics were determined by scanning electron microscopy (SEM). In primary bovine osteoblasts attachment kinetics, proliferation rate and synthesis of bone-associated proteins were tested on different surfaces. Results The results demonstrated that the proliferation rate of cells was significantly higher on zirconia surfaces than on titanium surfaces (p < 0.05; Student's t-test). In contrast, attachment and adhesion strength of the primary cells was significant higher on titanium surfaces (p < 0.05; U test). No significant differences were found in the synthesis of bone-specific proteins. Ultrastructural analysis revealed phenotypic features of osteoblast-like cells on both zirconia and titanium surfaces. Conclusion The study demonstrates distinct effects of the surface composition on osteoblasts in culture. Zirconia improves cell proliferation significantly during the first days of culture, but it does not improve attachment and adhesion strength. Both materials do not differ with respect to protein synthesis or ultrastructural appearance of osteoblasts. Zirconium oxide may therefore be a suitable material for dental implants.
We calculate low-energymeson decay processes and pion-pion scattering lengths in a two-flavour linear sigma model with global chiral symmetry, exploring the scenario in which the scalar mesons f0(600) and a0(980) are assumed to be ¯qq states.
We argue that Clustering in heavy ion collisions could be the missing element in resolving the socalled HBT puzzle, and briefly discuss the different physical situations where clustering could be present. We then propose a method by which clustering in heavy ion collisions could be detectedin a model-independent way.
This paper addresses a set of issues related to language documentation that are not often explicitly dealt with in academic publications, yet are highly important for the development and success of this new discipline. These issues include embedding language documentation in the socio-political context not only at the community level but also at the national level, the ethical and technical challenges of digital language archives, and the importance of regional and international cooperation among documentation activities. These issues play a major role in the initiative to set up a network of regional language archives in three South American countries, which this paper reports on. Local archives for data on endangered languages have recently been set up in Iquitos (Peru), Buenos Aires (Argentina), and in various locations in Brazil. An important feature of these is that they provide fast and secure access to linguistic and cultural data for local researchers and the language communities. They also make data safer by allowing for regular update procedures within the network.
Our understanding of the impact of recombination, mutation, genetic drift and selection on the evolution of a single gene is still limited. Here we investigate the impact of all of these evolutionary forces at the complementary sex determiner (csd) gene which evolves under a balancing mode of selection. Females are heterozygous at the csd gene and males are hemizygous; diploid males are lethal and occur when csd is homozygous. Rare alleles thus have a selective advantage, are seldom lost by the effect of genetic drift and are maintained over extended periods of time when compared to neutral polymorphisms. Here, we report on the analysis of 17, 19 and 15 csd alleles of Apis cerana, Apis dorsata and Apis mellifera honey bees respectively. We observed great heterogeneity of synonymous (pi S) and nonsynonymous (pi N) polymorphisms across the gene, with a consistent peak in exon 6 and 7. We propose that exons 6 and 7 encode the potential specifying domain (csd-PSD) which has accumulated elevated nucleotide polymorphisms over time by balancing selection. We observed no direct evidence that balancing selection favors the accumulation of nonsynonymous changes at csd-PSD (pi N/pi S ratios are all < 1, ranging from 0.6 to 0.95). We observed an excess of shared nonsynonymous changes, which suggests that strong evolutionary constraints are operating at csd-PSD resulting in the independent accumulation of the same nonsynonymous changes in different alleles across species (convergent evolution). Analysis of a csd-PSD genealogy revealed relatively short average coalescence times (~6 million years), low average synonymous nucleotide diversity (pi S < 0.09) and a lack of trans-specific alleles which substantially contrasts with previously analyzed loci under strong balancing selection. We excluded the possibility of a burst of diversification after population bottlenecking and intragenic recombination as explanatory factors, leaving high turn-over rates as the explanation for this observation. By comparing observed allele richness and average coalescence times with a simplified model of csd-coalescence, we found that small long term population sizes (i.e. Ne <104), but not high mutation rates, can explain short maintenance times, implicating a strong impact of genetic drift on the molecular evolution of highly social honey bees.
The function of APOBEC3G in the innate immune response against the HIV infection of primary cells
(2008)
In the past few years the regulation of HIV-1 replication by cellular cofactors has been a major topic of ongoing research. These factors potentially represent new targets for antiviral therapy as resistance will be minimized. However this requires a better understanding of the interaction of HIV-1 with these cellular factors and the immune system. The virus infects the cells of the immune system, beginning with macrophages and dendritic cells as primary target cells during transmission. The cellular cofactor, APOBEC3G was found to be an antiviral factor in macrophages, dendritic cells and primary T cells. APOBEC3G is a cytidindeaminase which causes G->A hypermutations in the HIV-Genome. Another protein which has a strong inhibitory effect on the HIV infection is Interferon alpha (IFN-alpha), however the exact reason for this has not yet been elucidated. The bacterial protein, Lipopolysaccharide (LPS) also induces a strong antiviral state in macrophages. In micro-array analysis it was shown that APOBEC3G was upregulated after the stimulation with both IFN-alpha and LPS in macrophages. The goal of this work was to investigate the role of APOBEC3G in the innate immune response to APOBEC3G. For this, the expression of APOBEC3G was examined in HIV-1 target cells after stimulation with IFN-alpha or LPS and the effect of the protein on the viral infection was examined. In the first experiments it could be shown through real time quantitative PCR that APOBEC3G was overexpressed after the stimulation with IFN-alpha or LPS. This result could be shown in monocytes derived macrophages from different blood donors. It was also shown that the overexpression of APOBEC3G correlated directly with the concentration of IFN-alpha. Through mutational analysis it could be then shown that the overexpressed APOBEC3G protein was also functional in the cells. In order to show that this was the result of APOBEC3G, the protein was the regulated through lentiviral vectors. After transduction of cell lines with lentiviral vectors containing APOBEC3G, the infection was inhibited by up to 70%. The infection was restored after the addition of shRNAs against APOBEC3G. For the further experiments, CD34+ stem cells were used. The cells were transduced the day after thawing with lentiviral vectors containing an eGFP marker gene and either APOBEC3G or shRNAs against APOBEC3G. The CD34+ cells were then cultivated and differentiated to macrophages. The cells transduced with Lentiviral vectors containing APOBEC3G had a very high expression of APOBEC3G in the cells, however the cells transduced with shRNA against APOBEC3G did not show a reduction in the protein expression. The infectivity of the transduced CD34+ and CD34 derived macrophages was then examined. It was expected that the cells transduced with APOBEC3G would show a reduced HIV-1 infection, and the cells transduced with shRNA against APOBEC3G would show an increase in infection. After the transduction and differentiation the CD34+ cells from the 3 donors were stimulated and infected with wild type HIV-1 and Vif defective HIV-1 virus. Vif is a viral protein that can bind to APOBEC3G leading it to the proteasome for degradation. The cells from the first donor transduced with APOBEC3G, were very difficult to infect. In general the shRNA against APOBEC3G had little effect on the course of infection; presumably, the shRNA against APOBEC3G was not active in most of these cells. Only the cells from the first donor showed an increase in HIV infection after the transduction with the shRNAs against APOBEC3G, this was most notably the case in the cells stimulated with IFN-alpha, which usually show very little infection. This work showed that APOBEC3G plays an important role in the innate immune response to HIV-1. The effect of APOBEC3G is both cell type as well as donor dependent. Recently, an interesting study also showed that there is a correlation between the expression of APOBEC3G in HIV infected individuals and their progression to AIDS. A better understanding of the role that APOBEC3G plays in the innate immune response would help in the search of new therapeutic possibilities. This could be done by inhibiting the Vif-APOBEC3G interaction in order to increase the amount of active APOBEC3G in the cells or increasing the APOBEC3G concentration in the cells in some manner.
Visual information is processed hierarchically in the human visual system. Early during processing basic features are analysed separately while at later stages of processing, they are integrated into a unified percept. By investigating a basic visual feature and following its integration at different levels of processing one can identify specific patterns. In certain visual impairments, these patterns can function defectively and their detailed study can clarify the cause of the visual deficit. Here we investigate orientation as a basic feature and use a property of the visual system called adaptation. Adaptation occurs as a decrease in the level of neural activity during repetitive presentation of the same stimulus. Psychophysical studies have shown that adaptation transfers interocularly, meaning that if only one eye is adapted the other eye shows also adaptation effects. Our aim was to investigate interocular transfer by means of functional magnetic resonance imaging (fMRI). Even though adaptation was demonstrated in the fMRI environment, the interocular transfer was never investigated in such a setup. First, we developed a method to measure interocular transfer of adaptation to gratings with fMRI. We then went further to test it in various groups of subjects. In normally sighted humans interocular transfer was present both in early (striate) as well as later visual areas (extrastriate). In subjects with impaired stereovision (with or without normal visual acuity) interocular transfer was absent in the investigated regions. Detailed analysis of the recorded differences between subjects with and subjects without stereovision was performed. The results of this analysis are presented in detail in this book. These results suggest that the neuronal mechanisms involved in the interocular transfer of pattern adaptation share, at least in part, the neural circuitry underlying binocular functions and stereopsis. We conclude that fMRI adaptation can be used for the assessment of cortical binocularity in humans with normal and impaired stereopsis. Further investigations are needed to address more subtle aspects of the lack of interocular transfer. Towards this purpose, through a fourth experiment we propose further directions that might shed more light on the issue of stereovision and its clinical implications. We show that carefully tuned variations in our experimental procedure might reveal other aspects of binocularity in the human visual system. We believe that the method we developed, apart from the interesting results shown here, has a high potential to be further used for other research questions. Following the above summarized ideas, the thesis comprises of three parts (chapters). The first chapter provides the main theoretical backgrounds of the visual system and of the MRI imaging technique, chapter two describes the experimental procedures while the results and their detailed discussion are detailed in chapter three.
The article analyzes the system of focus-sensitive particles and, to a lesser extent, clefts in Vietnamese. EVEN/ALSO/ONLY foci are discussed across syntactic categories, and Vietnamese is found to organize its system of focus-sensitive particles along three dimensions of classification: (i) EVEN vs. ALSO vs. ONLY; (ii) particles c-commanding foci vs. particles c-commanding backgrounds; (iii) adverbial focus-sensitive particles vs. particles c-commanding argument foci only. Towards the end of the paper, free-choice constructions and additional sentence-final particles conveying ONLY and ALSO semantics are briefly discussed. The peculiar Vietnamese system reflects core properties of the analogous empirical domain in Chinese, a known source of borrowings into Vietnamese over the millennia.
Implicated presuppositions
(2008)
The paper presents an additional argument for a specific account of semantic binding: the flat-binding analysis. The argument is based on observations concerning sloppy interpretations in verb phrase ellipsis when the binder is not the subject of the elided VP. In one such case, it is important that one of the binders belong to the domain of the other. This case can be derived from the flat-binding analysis as is shown in the paper, while it is unclear how to account for it within other analyses of semantic binding.
Background The treatment of Herpes-simplex-virus-encephalitis (HSVE) remains a major unsolved problem in Neurology. Current gold standard for therapy is acyclovir, a drug that inhibits viral replication. Despite antiviral treatment, mortality remains up to 15%, less than 20% of patients are able to go back to work, and the majority of patients suffer from severe disability. This is a discouraging, unsatisfactory situation for treating physicians, the disabled patients and their families, and constitutes an enormous burden to the public health services. The information obtained from experimental animal research and from recent retrospective clinical observations, indicates that a substantial benefit in outcome can be expected in patients with HSVE who are treated with adjuvant dexamethasone. But currently there is no available evidence to support the routine use of adjuvant corticosteroid treatment in HSVE. A randomized multicenter trial is the only useful instrument to address this question. Design GACHE is a multicenter, randomized, double-blind, placebo-controlled, parallel group clinical trial of treatment with acyclovir and adjuvant dexamethasone, as compared with acyclovir and placebo in adults with HSVE. The statistical design will be that of a 3-stage-group sequential trial with potential sample size adaptation in the last stage. Conclusion 372 patients with proven HSVE (positive HSV-DNA-PCR), aged 18 up to 85 years; with focal neurological signs no longer than 5 days prior to admission, and who give informed consent will be recruited from Departments of Neurology of academic medical centers in Germany, Austria and The Netherlands. Sample size will potentially be extended after the second interim analysis up to a maximum of 450 patients. Trial Registration Current Controlled Trials ISRCTN45122933
Background Drought is the major constraint to increase yield in chickpea (Cicer arietinum). Improving drought tolerance is therefore of outmost importance for breeding. However, the complexity of the trait allowed only marginal progress. A solution to the current stagnation is expected from innovative molecular tools such as transcriptome analyses providing insight into stress-related gene activity, which combined with molecular markers and expression (e)QTL mapping, may accelerate knowledge-based breeding. SuperSAGE, an improved version of the serial analysis of gene expression (SAGE) technique, generating genome-wide, high-quality transcription profiles from any eukaryote, has been employed in the present study. The method produces 26 bp long fragments (26 bp tags) from defined positions in cDNAs, providing sufficient sequence information to unambiguously characterize the mRNAs. Further, SuperSAGE tags may be immediately used to produce microarrays and probes for real-time-PCR, thereby overcoming the lack of genomic tools in non-model organisms. Results We applied SuperSAGE to the analysis of gene expression in chickpea roots in response to drought. To this end, we sequenced 80,238 26 bp tags representing 17,493 unique transcripts (UniTags) from drought-stressed and non-stressed control roots. A total of 7,532 (43%) UniTags were more than 2.7-fold differentially expressed, and 880 (5.0%) were regulated more than 8-fold upon stress. Their large size enabled the unambiguous annotation of 3,858 (22%) UniTags to genes or proteins in public data bases and thus to stress-response processes. We designed a microarray carrying 3,000 of these 26 bp tags. The chip data confirmed 79% of the tag-based results, whereas RT-PCR confirmed the SuperSAGE data in all cases. Conclusion This study represents the most comprehensive analysis of the drought-response transcriptome of chickpea available to date. It demonstrates that – inter alias – signal transduction, transcription regulation, osmolyte accumulation, and ROS scavenging undergo strong transcriptional remodelling in chickpea roots already 6 h after drought stress. Certain transcript isoforms characterizing these processes are potential targets for breeding for drought tolerance. We demonstrate that these can be easily accessed by micro-arrays and RT-PCR assays readily produced downstream of SuperSAGE. Our study proves that SuperSAGE owns potential for molecular breeding also in non-model crops.
Background Cyclin B1, the regulatory subunit of cyclin-dependent kinase 1 (Cdk1), is essential for the transition from G2 phase to mitosis. Cyclin B1 is very often found to be overexpressed in primary breast and cervical cancer cells as well as in cancer cell lines. Its expression is correlated with the malignancy of gynecological cancers. Methods In order to explore cyclin B1 as a potential target for gynecological cancer therapy, we studied the effect of small interfering RNA (siRNA) on different gynecological cancer cell lines by monitoring their proliferation rate, cell cycle profile, protein expression and activity, apoptosis induction and colony formation. Tumor formation in vivo was examined using mouse xenograft models. Results Downregulation of cyclin B1 inhibited proliferation of several breast and cervical cancer cell lines including MCF-7, BT-474, SK-BR-3, MDA-MB-231 and HeLa. After combining cyclin B1 siRNA with taxol, we observed an increased apoptotic rate accompanied by an enhanced antiproliferative effect in breast cancer cells. Furthermore, control HeLa cells were progressively growing, whereas the tumor growth of HeLa cells pre-treated with cyclin B1 siRNA was strongly inhibited in nude mice, indicating that cyclin B1 is indispensable for tumor growth in vivo. Conclusion Our data support the notion of cyclin B1 being essential for survival and proliferation of gynecological cancer cells. Concordantly, knockdown of cyclin B1 inhibits proliferation in vitro as well as in vivo. Moreover, targeting cyclin B1 sensitizes breast cancer cells to taxol, suggesting that specific cyclin B1 targeting is an attractive strategy for the combination with conventionally used agents in gynecological cancer therapy.
Introduction The prolactin-Janus-kinase-2-signal transducer and activator of transcription-5 (JAK2-STAT5) pathway is essential for the development and functional differentiation of the mammary gland. The pathway also has important roles in mammary tumourigenesis. Prolactin regulated target genes are not yet well defined in tumour cells, and we undertook, to the best of our knowledge, the first large genetic screen of breast cancer cells treated with or without exogenous prolactin. We hypothesise that the identification of these genes should yield insights into the mechanisms by which prolactin participates in cancer formation or progression, and possibly how it regulates normal mammary gland development. Methods We used subtractive hybridisation to identify a number of prolactin-regulated genes in the human mammary carcinoma cell line SKBR3. Northern blotting analysis and luciferase assays identified the gene encoding heat shock protein 90-alpha (HSP90A) as a prolactin-JAK2-STAT5 target gene, whose function was characterised using apoptosis assays. Results We identified a number of new prolactin-regulated genes in breast cancer cells. Focusing on HSP90A, we determined that prolactin increased HSP90A mRNA in cancerous human breast SKBR3 cells and that STAT5B preferentially activated the HSP90A promoter in reporter gene assays. Both prolactin and its downstream protein effector, HSP90α, promote survival, as shown by apoptosis assays and by the addition of the HSP90 inhibitor, 17-allylamino-17-demethoxygeldanamycin (17-AAG), in both untransformed HC11 mammary epithelial cells and SKBR3 breast cancer cells. The constitutive expression of HSP90A, however, sensitised differentiated HC11 cells to starvation-induced wild-type p53-independent apoptosis. Interestingly, in SKBR3 breast cancer cells, HSP90α promoted survival in the presence of serum but appeared to have little effect during starvation. Conclusions In addition to identifying new prolactin-regulated genes in breast cancer cells, we found that prolactin-JAK2-STAT5 induces expression of the HSP90A gene, which encodes the master chaperone of cancer. This identifies one mechanism by which prolactin contributes to breast cancer. Increased expression of HSP90A in breast cancer is correlated with increased cell survival and poor prognosis and HSP90α inhibitors are being tested in clinical trials as a breast cancer treatment. Our results also indicate that HSP90α promotes survival depending on the cellular conditions and state of cellular transformation.
This work presents a contribution to the literature on methods in search of lowdimensional models that yield insight into the equilibrium and kinetic behavior of peptides and small proteins. A deep understanding of various methods for projecting the sampled configurations of molecular dynamics simulations to obtain a low-dimensional free energy landscape is acquired. Furthermore low-dimensional dynamic models for the conformational dynamics of biomolecules in reduced dimensionality are presented. As exemplary systems, mainly short alanine chains are studied. Due to their size they allow for performing long simulations. They are simple, yet nontrivial systems, as due to their flexibility they are rapidly interconverting conformers. Understanding these polypeptide chains in great detail is of considerable interest for getting insight in the process of protein folding. For example, K. Dill et al. conclude in their review [28] about the protein folding problem that "the once intractable Levinthal puzzle now seems to have a very simple answer: a protein can fold quickly and solve its large global optimization puzzle simply through piecewise solutions of smaller component puzzles".
Ataxin-2 is a novel protein, within which the unstable expansion of a polyglutamine domain can cause Spinocerebellar Ataxia type 2 (SCA2), a neurodegenerative disease which belongs to the group of polyglutamine disorders. SCA2 is characterised by a progressive loss of neurons that first affects the cerebellum and brain stem and then may extend to other areas of the brain, like substantia nigra, motoneurons and thalamus. Several lines of research have attempted to determine therole of ataxin-2 in its normal and mutant version. Different animal models and cell culture approaches to study ataxin-2 function implicated ataxin-2 in RNA processing, embryonic development, apoptosis and cytoskeleton. However, the function of ataxin-2 still remains unclear. In this thesis, a protein interaction approach was chosen as an alternative to gain insights into the cellular function of ataxin-2. Full-length ataxin-2 was used as bait in a yeast two-hybrid screen of human adult brain cDNA. Among five candidate interactor proteins identified, two were the endophilins A1 and A3, proteins involved in vesicle endocytosis. Co-immunoprecipitation studies confirmed the association of these proteins in an endogenous complex of mouse brain. In vitro binding experiments narrowed the binding interfaces down to two proline-rich domains on ataxin-2, which interacted with the SH3 domain of endophilins A1/A3. Ataxin-2 and endophilins A1/A3 colocalised at the endoplasmic reticulum as determined by immunofluorescence microscopy of transfected cell lines, and by centrifugation fractionation studies of mouse brain. Importantly, the pattern observed in transfected cells was conserved in untransfected rat hippocampal neurons. In mouse brain, associations of ataxin-2 with endocytic proteins such as the adaptor CIN85, the ubiquitin ligase c-Cbl and also GRB2, in the last case by means of a SH3 domain array chip, were also demonstrated. GST pull-down assays showed ataxin-2 to interact directly with the SH3 domains A and C of CIN85, the C-terminal SH3 domain of GRB2, and the SH3 domain of Src, a kinase activated after receptor stimulation. Functional studies demonstrated that ataxin-2 affects endocytic trafficking of the epidermal growth factor receptor (EGFR) by reducing the EGFR internalisation after EGF stimulation. Taken together, these data implicate ataxin-2 to play a role in endocytic receptor cycling.
Synchronized neural activity in the visual cortex is associated with small time delays (up to ~10 ms). The magnitude and direction of these delays depend on stimulus properties. Thus, synchronized neurons produce fast sequences of action potentials, and the order in which units tend to fire within these sequences is stimulusdependent, but not stimulus-locked. In the present thesis, I investigated whether such preferred firing sequences repeat with sufficient accuracy to serve as a neuronal code. To this end, I developed a method for extracting the preferred sequence of firing in a group of neurons from their pair-wise preferred delays, as measured by the offsets of the centre peaks in their cross-correlation histograms. This analysis method was then applied to highly parallel recordings of neuronal spiking activity made in area 17 of anaesthetized cats in response to simple visual stimuli, like drifting gratings and moving bars. Using a measure of effect size, I then analyzed the accuracy with which preferred firing sequences reflected stimulus properties, and found that in the presence of gamma oscillations, the time at which a unit fired in the firing sequence conveyed stimulus information almost as precisely as the firing rate of the same unit. Moreover, the stimulus-dependent changes in firing rates and firing times were largely unrelated, suggesting that the information they carry is not redundant. Thus, despite operating at a time scale of only a few milliseconds, firing sequences have the strong potential to provide a precise neural code that can complement firing rates in the cortical processing of stimulus information.
Genetic analysis of salt adaptation in Methanosarcina mazei Gö1 : the role of abl, ota and otb genes
(2008)
1. M. mazei ist ein halotolerantes methanogenes Archäon und akkumuliert kompatible Solute als längerfristige Anpassung an erhöhte Osmolarität in der Umgebung. Bei intermediären Salzkonzentrationen (~ 400 mM NaCl) wird vorzugsweise α-Glutamat gebildet und bei höheren Salzkonzentrationen (~ 800 mM NaCl) wird Nε-Acetyl-ß-Lysin zusätzlich zu Alpha-Glutamat synthetisiert. 2. Eine Analyse der intrazellulären Solutezusammensetzung mittels NMR ergab, dass M. mazei Glycin-Betain als Osmolyt akkumulieren kann. Für die Aufnahme von Glycin-Betain konnten zwei putative Glycin-Betain-Transporter in M. mazei identifiziert werden, Ota und Otb. Ota steht für „osmoprotectant transporter A“ und Otb für „osmoprotectant transporter B“. Das Genom von M. mazei wurde, nachdem es vollstänidg sequenziert war, nach Genen durchsucht, die eine Rolle bei der Aufnhame von Glycin-Betain oder anderen kompabtiblen Solute spielen könnten. Dafür wurde die Sequenz eines Substratbindeproteins eines bekannten bakteriellen Glycin-Betain-Transporters, opuAC aus B. subtillis als Referenzsequenz verwendet. Hierbei konnte ein Homolog, otaC, in M. mazei identifiziert werden. otaC ist Teil eines Genclusters, welches für einen ABC-Transporter kodiert. otb wurde bei einer genomweiten Expressionsanalyse zur Salzadaptation von M. mazei identifiziert. Es wurden Gene eines putativen ABC-Transporters identifiziert, die unter Hochsalzbedingungen leicht induziert waren. Es stellte sich heraus, dass es sich hierbei um einen zweiten putativen Glycin-Betain-Transporter handelte. Otb gehört auch zur Familie der ABC-Transporter. Vergleichsanalysen zeigten, dass die beiden Transporter keine große Ähnlichkeit zueinander aufweisen. Die Funktion und Rolle der beiden ABC-Transporter, vor allem von Otb, war zu Beginn dieser Arbeit unklar. 3. Bei Analysen des intrazellulären Solutepools im Wildtyp von M. mazei stellte sich heraus, dass in Anwesenheit von Glycin-Betain die Konzentration von Glutamat und NE- Acetyl-ß-Lysin verringert war. Bei 400 mM NaCl reduzierte Glycin-Betain die Glutamat- Konzentration um 16% und bei 800 mM NaCl um 29%. Besonders deutlich zeigte sich der Einfluß von Glycin-Betain bei der Akkumulation von NE-Acetyl-ß-Lysin. Bei 400 mM NaCl reduzierte Glycin-Betain die Konzentration an NE-Acetyl-ß-Lysin um 60% und bei 800 mM NaCl um 50%. Der Einfluß von Glycin-Betain konnte auf verschiedenen Ebenen in M. mazei beobachten werden. Es konnte gezeigt werden, dass die relative Transkriptimenge von ota unter Hochsalzbedingungen zunimmt. Glycin-Betain reduzierte die Transkription von ota bei verschiedenen Salzkonzentrationen. Die relative Transkriptmenge an mRNA von ota wurde mittels quantitativer real-time PCR (qRT-PCR) quantifiziert und war bis zu 52% reduziert in Zellen, die in Gegenwart von Glycin-Betain gewachsen waren. Die Transkriptmenge von otb war unter den gleichen Bedingungen nicht beeinflusst und zeigte generell keine Zunahme mit der Salinität des Mediums. Des Weiteren konnte ein Effekt von Glycin-Betain auf Ebene der Transportaktivität von Ota gezeigt werden. Hier zeigte sich, dass Zellen, die bei 400 mM NaCl in Gegenwart von Glycin-Betain gezogen waren, eine geringere Transportaktivität aufweisen, als Zellen, die bei 400 mM NaCl ohne Glycin-Betain gewachsen waren. Die Transportaktivität war um 90% geringer. Es muss jedoch berücksichtigt werden, dass es sich bei den Zellen, die ohne Glycin-Betain gewachsen waren, um eine Nettoaufnahme von Glycin-Betain handelte. Im Gegensatz dazu, ist davon auszugehen, dass Zellen, die in Gegenwart von Glycin-Betain gewachsen waren, eine Austaschreaktion zwischen bereits vorhandenem intrazellulärem und extrazellulär angebotenem Glycin-Betain vornehmen. [Die dem letzten Punkt zugrundeliegenden Daten wurden von Silke Schmidt im Rahmen einer Diplomarbeit erhoben, die von mir mitbetreut wurde. Aus Gründen der vollständigen Darstellung des Projektverlaufes werden diese Daten mitaufgeführt.] 4. Zur weiteren Klärung der Rolle und Funktion der beiden putativen Glycin-Betain- Transporter Ota und Otb war es Ziel, Mutantenstudien durchzuführen. Eine Vorraussetzung für die Generierung von Mutanten ist, dass der Organismus auf Agarplatten wächst und Einzelkolonien von einer einzelnen Zelle ausgehend bildet. Dies ist ein wichtiger Punkt bei Methanosarcina spp., die Zellpakete, sogenannte Sarcinen bilden. Deshalb wurde zunächst nach den optimalsten Plattierungsbedingungen gesucht, unter denen M. mazei keine Sarcinen bildet und die Plattierungseffizienz am höchsten war. Die Plattierungseffizienz betrug im Durchschnitt 54%. Für das Einbringen von DNA in die Zellen wurde eine Liposomen-vermittelte Transformation getestet. Ein ähnliches Vorgehen war bereits für Methanosarcina acetivorans beschrieben, konnte bislang aber noch nicht erfolgreich für M. mazei Gö1 und andere Stämme von M. mazei angwendet werden. Erste Schritte zur Anpassung des Transformations-Protokolles beinhalteten das Testen von DOTAP verschiedener Hersteller, sowie die Konzentration an eingesetzter DNA. Das jeweilige Zielgen/Zieloperon, welches deletiert werden sollte, wurde durch eine pac-Kassette ersetzt. Diese kodiert für eine Puromycin-Transacetylase und verleiht dem Organismus Puromycin- Resistenz. Die pac-Kassette wurde von umgebenden Bereichen des Ziellocus flankiert und integrierte mit Hilfe dieser flankierenden Bereiche über doppelt-homologe Rekombination in das Genom. 5. Mit dem oben beschriebenen Verfahren wurden ota::pac- und otb::pac-Mutanten erzeugt und über Southern-Blot Analyse verifiziert. Eine erste Charakterisierung der Mutanten mittels qRT-PCR zeigte, dass auf mRNA-Ebene keine Transkripte von ota in M. mazei ota::pac oder otb in M. mazei otb::pac nachweisbar waren. Zusätzlich konnte auf Proteinebene das Substratbindeprotein OtaC in M. mazei ota::pac und OtbC in M. mazei otb::pac nicht über einen Antikörper gegen das jeweilige Substratbindeprotein nachgewiesen, was die erfolgreiche Deletion bestätigte. Erste phänotypische Charakterisierungen zeigten, dass das Wachstum von M. mazei ota::pac und M. mazei otb::pac unter Hochsalzbedingungen nicht beeinträchtigt und vergleichbar mit dem des Wildtyps war. Auch bei kälteren Wachstumstemperaturen von 22°C wuchsen die Mutanten ohne Phänotyp. 6. Radioaktive Transportstudien mit M. mazei otb::pac zeigten, dass diese Mutante, die noch ein funktionelles Ota besitzt, [14C]Glycin-Betain aufnehmen kann. Es stellte sich heraus, dass diese Mutante eine höhere Transportrate für Glycin-Betain aufwies, als der Wildtyp. Die Aufnahmerate war um einen Faktor 2 höher als beim Wildtyp. Zusätzlich konnten qRT-PCR Analysen zeigen, dass die relative Transkriptmenge an ota in der otb::pac-Mutante um einen Faktor 2 höher war, als im Wildtyp. Umgekehrt konnte dieser Effekt nicht beobachtet werden, d.h. eine erhöhte Transkriptmenge an otb in M. mazei ota::pac. Auf Proteinebene konnte beobachtet werden, dass die intrazelluläre Konzentration an OtaC in der Mutatne leicht höher war als im Wildtyp. Jedoch stellte sich heraus, dass die intrazelluläre Glycin-Betain-Konzentration bei 400 mM NaCl in der Mutante nicht erhöht war verglichen mit Wildtyp, sondern die Konzentrationen gleich waren. Bei höheren Salzkonzentrationen (800 mM NaCl) zeigte sich jedoch ein anderes Bild: die intrazelluläre Glycin-Betain-Konzentration war in der Mutante um 60% erhöht. Dies könnte auf die erhöhte Transportaktivität von M. mazei otb::pac zurückzuführen sein. Die Konzentration anderer kompatibler Solute wie Glutamat und NE-Acetyl-ß-Lysin waren in diesen Zellen bis zu 48% reduziert. In vorherigen Studien konnte gezeigt werden, dass heterolog überproduziertes Ota von M. mazei in E. coli MKH13, eine E. coli-Mutante, die keine Glycin-Betain-Transporter mehr besitzt, die Aufnahme von Glycin-Betain wieder herstellen konnte [die Daten von ota in E. coli MKH13 wurden in der bereits oben erwähnten Diplomarbeit von Silke Schmidt erhoben]. Zur Klärung der Funktion von Otb wurde der gleiche Versuch mit otb in E. coli MKH13 durchgeführt. Jedoch konnte eine heterologe Produktion von Otb aus M. mazei die Aufnahme von Glycin-Betain in E. coli MKH13 nicht wieder herstellen. Hierbei wurde über Western-Blot Analyse sichergestellt, dass Otb tatsächlich in der Membran vorhanden war. Auch Transportstudien mit der Mutante M. mazei ota::pac zeigten, dass diese Mutante kein [14C]Glycin-Betain mehr aufnehmen konnte. Es konnte auch keine Akkumulation von Glycin-Betain mittels NMR in dieser Mutante gemessen werden. Des Weiteren zeigte sich, dass die intrazellulären Konzentrationen an Glutamat und Nε-Acetyl-ß-Lysin bei 400 mM und 800 mM NaCl in der Mutante unbeeinflusst von der Glycin-Betain-Konzentration im Medium waren. Weitere Transportstudien mit M. mazei ota::pac zur Aufnahme von [14C]Cholin zeigten, dass dieses Molekül weder vom Wildtyp, noch von der Mutante aufgenommen wurde. Dieses Ergebnis wurde durch Messung des Solutepools mittels NMR bestätigt. Somit kann ausgeschlossen werden, dass Otb unter den gemessenen Bedingungen weder ein Glycin- Betain-Transporter noch ein Cholin-Transporter in M. mazei ist. Diese Beobachtungen belegen eindeutig, dass Ota der einzige funktionelle Glycin-Betain-Transporter in M. mazei ist, während die Rolle von Otb bislang noch ungeklärt ist. 7. Nε-Acetyl-ß-Lysin, das dominante kompatible Solut in M. mazei bei 800 mM NaCl, wird durch die Enzyme AblA, einer Lysin-2,3-Aminomutase und AblB, einer ß-Lysin- Acetyltransferase synthetisiert. In dieser Arbeit wurde eine Δabl::pac-Mutante generiert, um die Fragen zu klären, ob die beiden Enzyme vom postulierten abl-Operon kodiert werden und wenn ja, welchen Phänotyp eine Nε-Acetyl-ß-Lysin-freier-Mutante bei Salzstress zeigt. NMR-Analysen zeigten, dass in der abl::pac-Mutante kein Nε-Acetyl-ß-Lysin mehr nachweisbar war. Dies belegt, dass die Gene ablA und ablB und deren Genprodukte für die Synthese von NE-Acetyl-ß-Lysin in M. mazei essentiell sind. Unter Hochsalzbedingungen ist das Wachstum von M. mazei abl::pac im Vergleich zum Wildtyp deutlich verlangsamt. Dieses Ergebnis war unerwartet, da eine abl::pac-Mutante von Methanococcus maripaludis unter Hochsalzbedingungen nicht mehr wachsen konnte. Unter Niedrigsalz und bei intermediären Salzkonzentration war das Wachstum von M. mazei abl::pac nicht eingeschränkt und verhielt sich wie der Wildtyp. In Gegenwart von Glycin-Betain akkumulierte die abl::pac-Mutante von M. mazei unter Hochsalzbedingungen 2,4 mal mehr Glycin-Betain als der Wildtyp, um das Defizit im Solutepool auszugleichen und Wachstum bei Hochsalz zu ermöglichen. Dadurch war sie in der Lage, wieder wie der Wildtyp zu wachsen. 8. Der Verlust von NE-Acetyl-ß-Lysin wurde unter Hochsalzbedingungen durch erhöhte Konzentrationen an Glutamat und einem neuen kompatiblen Solut kompensiert. NMRAnalysen zeigten, dass es sich hierbei um Alanin handelte. Bis jetzt wurde die Verwendung von Alanin als kompatibles Solut noch nie beschrieben. Um sicherzustellen, dass Alanin als kompatibles Solut in M. mazei abl::pac dient, wurde die Konzentration bei verschiedenen Salzkonzentrationen gemessen. Die Konzentration an Alanin nahm mit steigender Salzkonzentration zu. Bei 800 mM NaCl war die Konzentration 12 fach erhöht verglichen mit der Konzentration bei 400 mM NaCl. Außerdem redzierte Glycin-Betain die Alanin- Konzentration bei 800 mM NaCl um 58%. Transportexperimente zeigten, dass M. mazei kein Alanin aus dem Medium aufnehmen kann. 9. Erste Analysen möglicher Synthesewege für Alanin zeigten, dass die Alanin- Dehydrogenase nicht auf Transkriptebene unter Hochsalzbedingungen induziert war und somit keine Rolle in der Synthese von Alanin als kompatibles Solut spielen dürfte. Es könnten jedoch Aminotransferasen eine Rolle bei der Biosynthese von Alanin spielen. Des Weiteren sind die Enzyme, die für die Synthese von Glutamat als kompatibles Solut verantwortlich sind, unbekannt. Dies gilt für alle bis jetzt untersuchten Organismen, die Glutamat als kompatibles Solut nutzen. In dieser Arbeit wurde versucht, mit Hilfe der abl::pac-Mutante, die erhöhte Glutamat-Mengen zum Osmoschutz produziert, der Frage nachzugehen, welche Gene/Enzyme eine Rolle spielen könnten bei der Synthese von Glutamat als kompatibles Solut. Dazu wurden unter Hochsalzbedingungen die Transkriptmengen verschiedener Genen, die an der Glutamat-Synthese beteiligt sein könnten, in der Mutante und im Wildtyp untersucht. Hierbei zeigte sich, dass mehrere Gene verschiedener Enzyme unter Hochsalzbedingungen in der Mutante leicht induziert waren. Eines dieser Enzyme ist die Glutaminsynthetase. Dieses Enzym ist für die Umsetzung von Glutamat zu Glutamin unter Verbrauch von ATP verantwortlich. M. mazei besitzt zwei Gene, die für eine putative Gluaminsynthetase kodieren. In M. mazei abl::pac ist unter Hochsalzbedingungen das Gen glnA2 im Vergleich zum Wildtyp (4,03 ± 1,14) leicht induziert (7,63 ± 2,2). Des weiteren konnte in der Mutante eine leichte Induktion von gltB1, gltB2 und gltB3 unter Hochsalz beobachtet werden. Diese Gene kodieren für die einzelnen Domänen einer Glutamatsynthase. Diese ersten Analysen geben einen Hinweis darauf, dass die Synthese von Glutamat als kompatibles Solut über eine gekoppelte Reaktion der Glutaminsynthetase und der Glutamatsynthase verlaufen könnte.
THIS PAPER WILL conduct a critical investigation of the famous argument against atomism first made by the 4th century CE Indian Buddhist philosopher Vasubandhu in his idealist treatise Vim. ´satik¯a Vij ˜naptim¯atrat ¯asiddhi (The Twenty Verses of Mind-Only). Although the present exposition will be more conceptual than historical in focus, it will first unfold the Abhidharmic Buddhist precursors of the Mind–Only epistemology. With the necessary background in place, I shall then attempt a rational reconstruction of the substance of Vasubandhu’s argument against atomism, rendering it intelligible to the modern reader by transposing it into contemporary philosophical idiom. Finally, I will employ the analysis of atomism and the external world in the Mind–Only school as a point of departure from which to further probe closely related concerns of Buddhist transcendental philosophy having to do with the nature of empirical knowledge, the power of skeptical argument, and the status of apperception. ...
The Match method for the quantification of polar chemical ozone loss is investigated mainly with respect to the impact of the transport of air masses across the vortex edge. For the winter 2002/03, we show that significant transport across the vortex edge occurred and was simulated by the Chemical Lagrangian Model of the Stratosphere. In-situ observations of inert tracers and ozone from HAGAR on the Geophysica aircraft and balloon-borne sondes, and remote observations from MIPAS on the ENVISAT satellite were reproduced well by CLaMS. The model even reproduced a small vortex remnant that remained a distinct feature until June 2003 and was also observed in-situ by a balloon-borne whole air sampler. We use this CLaMS simulation to quantify the impact of transport across the vortex edge on ozone loss estimates from the Match method. We show that a time integration of the determined vortex average ozone loss rates, as performed in Match, results in a larger ozone loss than the polar vortex average ozone loss in CLaMS. The determination of the Match ozone loss rates is also influenced by the transport of air across the vortex edge. We use the model to investigate how the sampling of the ozone sondes on which Match is based represents the vortex average ozone loss rate. Both the time integration of ozone loss and the determination of ozone loss rates for Match are evaluated using the winter 2002/2003 CLaMS simulation. These impacts can explain the majority of the differences between CLaMS and Match column ozone loss. While the investigated effects somewhat reduce the apparent discrepancy in January ozone loss rates reported earlier, a distinct discrepancy between simulations and Match remains. However, its contribution to the accumulated ozone loss over the winter is not large.
By translocating proteasomal degradation products into the endoplasmic reticulum (ER) for loading of major histocompatibility complex (MHC) class I molecules, the ATP binding cassette (ABC) transporter associated with antigen processing (TAP) plays a pivotal role in the adaptive immunity against infected or malignantly transformed cells. A key question regarding the transport mechanism is how the inter-domain communication and conformational dynamics of the TAP complex are connected during the peptide transport. To identify residues involved in this processes, we evolved a Trojan horse strategy in which a small artificial protease is inserted into antigenic epitopes. After binding, the TAP backbone in contact is cleaved, allowing the peptide sensor site to be mapped by mass spectrometry. Within this study, the peptide sensor and transmission interface have been identified. This region aligns with the cytosolic loop 1 (CL1) of Sav1866 and MsbA. Based on a number of experimental data and the homology to the bacterial ABC exporter Sav1866, we constructed a 3D structural model of the core TAP complex. According to this model, the CL1 and CL2 of TAP1 are extended cytosolic loops connecting the transmembrane helices (TMH) 2 and 3, and TMH4 and 5 respectively, and contact both nucleotide binding domains (NBDs) of the opposite subunit. In contrast to exporters, the cytosolic loop (named L-loop) of BtuCD importer is much shorter, and contacts only one NBD. The data confirm that the CL1 of TAP1 functions as signal transducer in ABC exporters, because it does not interfere with substrate binding but with substrate transport. The peptide contact site identified herein is restructured during the ATP hydrolysis cycle. Importantly, TAP showed a structural change trapped in the ATP hydrolysis transition state, because direct contact between peptide and CL1 is abolished. By cysteine scanning, the most conserved residues within CL1 were identified, which disrupted the tight coupling between peptide binding and transport. Together with Val-288, these residues are essential in sensing the bound peptide and inter-domain signal transmission. To characterize the molecular architecture of CL1, a convenient and minimally perturbing approach was used, which combined cysteine substitution in the CL1 region and determination of accessibility to thiol specific compounds with different properties. These studies revealed that the N-terminal region of CL1 has a good accessibility for hydrophilic (iodoacetamidofluorescein, IAF) and amphiphilic probes (BODIPY maleimide, BM), whereas the C-terminal region is accessible for hydrophobic probe (coumarin maleimide, CM). Kinetic studies of fluorescence labeling suggest that this region displayed a different accessibility to probes when the protein undergoes distinct conformations (e. g. nucleotide free state), thereby reflecting conformational transitions. Fluorescence labeling with BM induces a lost of peptide transport, whereas the peptide binding remains unaffected. These results indicate that covalent modifications of the CL1 residues influenced the inter-domain communication between transmembrane domain (TMD) and NBD. The X-loop is a recently discovered motif in the NBD of ABC exporters, which stays in close contact to the CLs. Moreover, because the X-loop precedes the ABC signature motif, it probably responds to ATP binding and hydrolysis and may transmit conformational changes to the CLs. By substitution of the highly conserved Glu-602 of TAP2 with residues that have different chemical properties, it was shown for the first time that the X-loop is a functional important element, which plays an key role in coupling substrate binding to downstream events in the transport cycle. We further verified domain swapping in the TAP complex by cysteine cross-linking. The TAP complex can be reversibly arrested either in a binding or translocation incompetent state by cross-linking of the X-loop to CL1 or CL2, respectively. These results resolve the structural arrangement of the transmission interface and point to different functions of the cytosolic loops in substrate recognition, signaling and transport.
The Bay of Diego-Suarez, considered to be one of the finest and largest natural harbours in the world, is located towards the northernmost tip of Madagascar in the Antsiranana province. Despite its historical and current use as a port, much of its convoluted perimeter is still somewhat untouched, harbouring pristine shorelines and subtidal coral reefs. The position of the bay between other regions in which high marine biodiversity has already been revealed suggests that it may also harbour high biodiversity. However, the relatively long coastline and limited connectivity of the bay with the Indian Ocean, in combination with existing anthropogenic activities, potentially make its marine environments susceptible to a range of environmental impacts including sedimentation, nutrification and pollution. The Frontier-Madagascar Marine Research Programme (FMMRP) became involved in conducting marine ecological survey work in the Bay of Diego-Suarez, north Madagascar, in April 2005, having relocated from its previous base at Anakao in southwest Madagascar. The rationale for the survey programme stemmed from the affiliation of the FMMRP with the Malagasy organisations Association Nationale pour la Gestion des Aires Protégées (ANGAP) and Service d’Appui a la Gestion de l’Environnement (SAGE), who were interested in identifying areas of the bay with particularly healthy coral reef systems. Additional environmental interest in the bay has arisen as a result of its proximity to surrounding terrestrial protected areas such as the newly managed Ramena complex, incorporating Orangea and Montagne des Français, and also Montagne d’Ambre. Since its relocation to the Diego-Suarez area, the FMMRP has compiled over two years’ worth of marine ecological data relating to benthic community composition, fish species abundance and population size structure, frequency of algae and invertebrate indicator species, and physical environmental parameters. Thus there exists an extensive dataset for the Bay of Diego-Suarez, from which details of the current condition of its marine habitats can be investigated and a baseline for temporal monitoring can be established. The primary purpose of this report is to signify the initial detailed dissection of the dataset and demonstrate the conclusions that can be made regarding the ecological status of coral reef systems within the bay. This has mostly involved the examination of benthic data, focusing upon variations in percentage cover of substrata and coral community characteristics as useful structural indicators of reef condition. Additionally, the report includes an assessment of the abundance and distribution of sea urchins and their relation to benthic community patterns, as a demonstration of the ability to interrelate different aspect of the FMMRP dataset to enhance the conclusions that can be drawn. Benthic community data were obtained from 380 line intercept transects conducted in different sectors of the Bay of Diego-Suarez between October 2005 and December 2007, representing a combined distance of 7,600 m. Sediment occupied the greatest overall proportion of the benthos (around 38%), especially in the western areas of the bay. Overall mean hard coral cover was around 15%, and tended to co-vary with other ‘hard’ substrata such as rock and rubble. In total, 38 scleractinian coral genera were recorded during survey work, in addition to a number of unidentified genera. The coral communities of the bay were dominated by Acropora and Porites spp., which comprised around 33% and 20% of total recorded hard coral cover, respectively. Hard coral cover and generic diversity appeared to be positively related. These indicators were greatest in the northeast area opposite the mouth of the bay, reaching mean values of around 37% and 6.8 genera, respectively. Here, the hard coral community was dominated by Acropora spp. and comprised a relatively high proportional cover of Galaxea spp. In the northwest of the bay, coral cover was approximately half as great and consisted primarily of species belonging to the genera Porites and Millepora. Habitats in this area were highly similar in terms of their overall coral community composition. Hard coral cover and diversity were generally lower in the southern portion of the bay, especially in more immediate proximity to the population centre of Diego-Suarez (around 2% and 1.5- 5.5 genera, respectively). Coral community composition was considerably more variable than in the northern portion of the bay. v After sediment and ‘hard’ substrata, seagrass formed the next major interplaying component of the benthic environment (around 10% overall proportional cover). The easternmost areas adjacent to the mouth of the bay were characterised by high seagrass cover, whic h reached around 48%. Little or no seagrass was encountered elsewhere, except at one locality in the northwest (around 13% cover). Macroalgae cover was low and less variable, reaching a maximum value of around 10% adjacent to Diego-Suarez. There were no differences between island and mainland sites in terms of overall benthic substratum characteristics, yet soft coral cover was significantly greater amongst island sectors. Sea urchin abundance data were obtained from 498 belt transects conducted between April 2006 and December 2007, representing a total area of 49,800 m2. A total of 6 species were recorded, of which Diadema setosum comprised by far the greatest relative abundance (96%) and observation frequency (55%). The greatest population densities of this species were encountered in the more exposed areas in the west and northwest, reaching around 1.5 m-2, and very few individuals were recorded in the eastern reaches. Data suggest a possible seasonal increase in D. setosum densities, corresponding with an increase in water temperature towards the end of the year. No significant correlation existed between D. setosum population density and coral cover, although these seemed to be inversely related in the central northern area of the bay. There was also no significant correlation with macroalgae cover. However, D. setosum density was positively and negatively associated with rubble and seagrass cover, respectively. There was a lack of a clear pattern amongst sectors with respect to overall benthic community characteristics, let alone between the density of D. setosum and benthic substratum composition. In conclusion, a relatively detailed map of benthic community composition has been produced for the Bay of Diego-Suarez, which shall be useful in elucidating the primary factors determining the condition of marine environments within the bay and developing effective sustainable management strategies. Further analysis, incorporating additional components of the FMMRP dataset, is required in order to further clarify our understanding of the key issues surrounding the current status of these coral reef systems. It is hoped that continued survey work will enable important long-term ecological monitoring of the marine environment of the bay and assessment of the effectiveness of any management initiatives that may be implemented.
The content of this book will explain A For various reasons Europeans and Germans left their Homeland. B How they travelled in groups and individually. C How they landed in South Australia. D The Newcomers reception in a British colony. E The treatment they received in Australia. F What the Germans and Europeans achieved in Australia.
In the present work, the photo-protection mechanisms in plants and purple bacteria were investigated experimentally at the molecular level. For this purpose, several spectroscopic methods were combined and applied to elucidate the function of carotenoids, pigments of the photosynthetic apparatus, in photo-protection. The experiments were focused on the mechanisms involved in quenching of singlet and triplet states of the electronically excited (bacterio)chlorophylls. This photosynthetic reaction events occur on an ultrafast time-scale. Measuring such short-lived events, and understanding the underlying principles, demand some of the most precise experiments and exact measurement technologies currently available. This implies certain requirements for the light source used: a suitable wavelength within the absorption band of the sample, sufficient power, and, most importantly, a pulse duration short compared to the studied reaction. Nowadays, we can achieve all this requirements using femtosecond-spectroscopic systems, which produce laser pulses shorter than 100 femtoseconds (fs). Transient absorption spectroscopy provides important information on molecular dynamics interrogating electronic transitions. The technique is based on photochemical generation of transient species with femtoseconds pump pulses and measuring transient absorption changes of the sample using a second, time delayed probe pulse which in this case is a spectrally broad white-light pulse.
The total stratospheric organic chlorine and bromine burden was derived from balloon-borne measurements in the tropics (Teresina, Brazil, 5°04´ S, 42°52´ W) in 2005. Whole air samples were collected cryogenically at altitudes between 15 and 34 km. For the first time, we report measurements of a set of 28 chlorinated and brominated substances in the tropical upper troposphere and stratosphere including ten substances with an atmospheric lifetime of less than half a year. The substances were quantified using pre-concentration techniques followed by Gas Chromatography with Mass Spectrometric detection. In the tropical tropopause layer at altitudes between 15 and 17 km we found 1.1–1.4% of the chlorine and 6–8% of the bromine to be present in the form of very short-lived organic compounds. By combining the data with tropospheric reference data and age of air observations the abundances of inorganic chlorine and bromine (Cly and Bry) were derived. At an altitude of 34 km we calculated 3062 ppt of Cly and 17.5 ppt of Bry from the decomposition of both long- and short-lived organic source gases. Furthermore we present indications for the presence of additional organic brominated substances in the tropical upper troposphere and stratosphere.
The current performance of a 4π barium fluoride gamma detector consisting of 41 modules is evaluated. It will be used to measure neutron capture events in different samples that are exposed to a neutron beam that is expected to contain up to 10^7 neutrons/(cm^2 sec). The capture cross-sections acquired in this experiment will be relevant to a multitude of different areas, for example to s-process studies, or accelerator-driven systems. The detector array was re-mounted after having been moved from Karlsruhe to Frankfurt and in the course of this process, the detector modules have been checked for their current detection properties. Every module consists of a BaF2 crystal, a photomultiplier tube connected to the crystal by sillicon oil and a voltage divider to drive the PMT, so each of them is already an individual gamma detector. Using Cobalt-60 and Caesium-137 test sources the energy resolution and - more importantly - the time resolution of every module has been determined; the results are presented in this work and compared to previous data taken at the time the detector was built initially in the mid-1980s.