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The Late Cretaceous is known to be mostly affected by warm periods interrupted temporarily by a number of cooling events. The reconstruction of the paleoclimatic conditions during a period of high concentration of CO2 in the atmosphere is of great importance for the creation of future climate models. We applied the recently developed method reconstructing the SST from the TEX86 (TetraEther indeX of tetraethers consisting of 86 carbon atoms).
The sample material used for the present study was obtained from the tropical Late Cretaceous southern Tethys upwelling system (Negev/Israel), lasting from the Late Santonian to the Early Maastrichtian (~ 85 to 68 Ma). On the core samples from the Shefela basin, representing the outer belt of the upwelling system and the outcrop profile from the open mine Mishor Rotem (Efe Syncline), representing the inner belt, various bulk geochemical and biomarker studies were performed in this thesis.
Derived from TEX86 data, a significant long-term SST cooling trend from 36.0 to 29.3 °C is recognized during the Late Santonian and the Early Campanian in the southern Tethys margin. This is consistent with the opening and deepening of the Equatorial Atlantic Gateway (EAG) and the intrusion of cooler deep water from the southern Atlantic Ocean influencing the global SSTs and also the Tethys Ocean. Furthermore, the cooler near shore SST usually found in modern upwelling systems could be verified in case of the ancient upwelling system investigated in the present study. The calculated mean SST in the inner belt (27.7 °C) represented in the Efe Syncline was 1.5 °C cooler in comparison to the more seaward located outer belt (Shefela basin).
Moreover, geochemical and biomarker analyses were used to identify both the accumulation of high amounts of phosphate in the PM and good preservation of organic matter (OM) in the lower part of the OSM section. Total organic carbon (TOC) contents are highly variable over the whole profile reaching from 0.6 % in the MM, to 24.5 % in the OSM. Total iron (TFe) varies from 0.1 % in the PM to 3.3 % in the OSM and total sulfur (TS) varies between 0.1 % in the MM and 3.4 % in the OSM. Different correlations of TS, TOC and TFe were used to identify the conditions during the deposition of the different facies types. Natural sulfurization was found to play a key role in the preservation of the OM particularly in the lower part of the OSM. Samples from the OSM and the PM were deposited under dysoxic to anoxic conditions and iron limitation lasted during the deposition of the OSM and the PM, which effected the incorporation of sulfur into OM.
Phosphorus is highly accumulated in the sediments of the PM with a mean proportion of 11.5 % total phosphorus (TP), which is drastically reduced to a mean value of 0.9 % in the OSM and the MM. From the correlation of the bulk geochemical parameters TOC/TOCOR ratio and TP a major contribution of sulfate reducing bacteria to the phosphate deposition is concluded. This interrelation has previously been investigated in recent coastal upwelling systems off Peru, Chile, California and Namibia. This was further supported by the analysis of branched and monounsaturated fatty acids indicating the occurrence of sulfate reducing and sulfide oxidizing bacteria during the deposition.
According to the results from the analysis of n-alkanes and C27- to C29-steranes up to 95 % of the OM was of marine origin.
Organic sulfur compounds (OSC) were a major compound class in the aromatic hydrocarbon fraction and n-Alkyl and isoprenoid thiophenes were the most abundant, with highest amounts found for 2-methyl-5-tridecyl-thiophene (28 µg/g TOC). The relatively high abundance of ββ-C35 hopanoid thiophenes and epithiosteranes is equivalent to an incorporation of sulfur during the early stages of diagenesis.
Moreover, the geochemical parameters δ13Corg, δ15Norg, C/N and the pristane/phytane (Pr/Ph) ratio, were studied for reconstruction of seafloor and water column depositional environments. The high C/N ratio along with relatively low values of δ15Norg (4 ‰ to 6 ‰) and δ13Corg (-29 ‰ to -28 ‰) are consistent with a significant preferential loss of nitrogen-rich organic compounds during diagenesis. Oxygen-depleted conditions lasted during the deposition of the PM and the bottom of the OSM, reflected by the low Pr/Ph ratio of 0.11–0.7. In the upper part of the OSM and the MM the conditions changed from anoxic to dysoxic or oxic conditions. This environmental trend is consistent with co-occurring foraminiferal assemblages in the studied succession and implies that the benthic species in the Negev sequence were adapted to persistent minimum oxygen conditions by performing complete denitrification as recently found in many modern benthic foraminifera.
Furthermore, the anammox process could have influenced the nitrogen composition of the sediments. In this anaerobically process nitrite and ammonia are converted to molecular nitrogen.
One of the most challenging aspects of RT-qPCR data analysis is the identification of reliable reference genes. Ideally, they should be neither induced nor repressed under different experimental conditions. To date, few reference genes have been adequately studied for sugarcane (Saccharum spp.) using statistical approaches. In this work, six candidate genes (αTUB, GAPDH, H1, SAMDC, UBQ, and 25S rRNA) were tested for gene expression normalization of sugarcane root tissues from drought-tolerant and -sensitive accessions after continuous dehydration (24 h). By undergoing different approaches (GeNorm, NormFinder, and BestKeeper), it was shown that most of them could be used in combinations for normalization purposes, with the exception of SAMDC. Nevertheless three of them (H1, αTUB, and GAPDH) were considered the most reliable reference genes. Their suitability as reference genes validated the expression profiles of two targets (AS and PFPα1), related to SuperSAGE unitags, in agreement with results revealed by previous in silico analysis. The other two sugarcane unitags (ACC oxidase and PIP1-1), after salt stress (100 mM NaCl), presented their expressions validated in the same way. In conclusion, these reference genes will be useful for dissecting gene expression in sugarcane roots under abiotic stress, especially in transcriptomic studies using SuperSAGE or RNAseq approaches.
Atherosclerosis is a chronic inflammatory disease. Lesion progression is primarily mediated by cells of the monocyte/macrophage lineage. IL-17A is a proinflammatory cytokine, which modulates immune cell trafficking and is involved inflammation in (auto)immune and infectious diseases. But the role of IL-17A still remains controversial. In the current study, we investigated effects of IL-17A on advanced murine and human atherosclerosis, the common disease phenotype in clinical care. The 26-wk-old apolipoprotein E–deficient mice were fed a standard chow diet and treated either with IL-17A mAb (n = 15) or irrelevant Ig (n = 10) for 16 wk. Furthermore, essential mechanisms of IL-17A in atherogenesis were studied in vitro. Inhibition of IL-17A markedly prevented atherosclerotic lesion progression (p = 0.001) by reducing inflammatory burden and cellular infiltration (p = 0.01) and improved lesion stability (p = 0.01). In vitro experiments showed that IL-17A plays a role in chemoattractance, monocyte adhesion, and sensitization of APCs toward pathogen-derived TLR4 ligands. Also, IL-17A induced a unique transcriptome pattern in monocyte-derived macrophages distinct from known macrophage types. Stimulation of human carotid plaque tissue ex vivo with IL-17A induced a proinflammatory milieu and upregulation of molecules expressed by the IL-17A–induced macrophage subtype. In this study, we show that functional blockade of IL-17A prevents atherosclerotic lesion progression and induces plaque stabilization in advanced lesions in apolipoprotein E–deficient mice. The underlying mechanisms involve reduced inflammation and distinct effects of IL-17A on monocyte/macrophage lineage. In addition, translational experiments underline the relevance for the human system.
Sudden cardiac death (SCD) remains a daunting problem. It is a major public health issue for several reasons: from its prevalence (20% of total mortality in the industrialized world) to the devastating psycho-social impact on society and on the families of victims often still in their prime, and it represents a challenge for medicine, and especially for cardiology. This text summarizes the discussions and opinions of a group of investigators with a long-standing interest in this field. We addressed the occurrence of SCD in individuals apparently healthy, in patients with heart disease and mild or severe cardiac dysfunction, and in those with genetically based arrhythmic diseases. Recognizing the need for more accurate registries of the global and regional distribution of SCD in these different categories, we focused on the assessment of risk for SCD in these four groups, looking at the significance of alterations in cardiac function, of signs of electrical instability identified by ECG abnormalities or by autonomic tests, and of the progressive impact of genetic screening. Special attention was given to the identification of areas of research more or less likely to provide useful information, and thereby more or less suitable for the investment of time and of research funds.
Ursine bears are a mammalian subfamily that comprises six morphologically and ecologically distinct extant species. Previous phylogenetic analyses of concatenated nuclear genes could not resolve all relationships among bears, and appeared to conflict with the mitochondrial phylogeny. Evolutionary processes such as incomplete lineage sorting and introgression can cause gene tree discordance and complicate phylogenetic inferences, but are not accounted for in phylogenetic analyses of concatenated data. We generated a high-resolution data set of autosomal introns from several individuals per species and of Y-chromosomal markers. Incorporating intraspecific variability in coalescence-based phylogenetic and gene flow estimation approaches, we traced the genealogical history of individual alleles. Considerable heterogeneity among nuclear loci and discordance between nuclear and mitochondrial phylogenies were found. A species tree with divergence time estimates indicated that ursine bears diversified within less than 2 My. Consistent with a complex branching order within a clade of Asian bear species, we identified unidirectional gene flow from Asian black into sloth bears. Moreover, gene flow detected from brown into American black bears can explain the conflicting placement of the American black bear in mitochondrial and nuclear phylogenies. These results highlight that both incomplete lineage sorting and introgression are prominent evolutionary forces even on time scales up to several million years. Complex evolutionary patterns are not adequately captured by strictly bifurcating models, and can only be fully understood when analyzing multiple independently inherited loci in a coalescence framework. Phylogenetic incongruence among gene trees hence needs to be recognized as a biologically meaningful signal.
NeoBiota, Volume 23 (2014)
(2014)
Pulsed Electron Paramagnetic Resonance (EPR) spectroscopy is the most powerful tool to investigate structural properties and dynamics of paramagnetic substances. Up to date the electron spin is almost exclusively manipulated by rectangular shaped microwave pulses generated with switches. These pulses are unselective which means they excite outside their nominal bandwidth which is in most cases shallow compared to the overall spectral width of the spin system. Shaped pulses which are widely applied in NMR promise higher bandwidth and selectivity. The use of amplitude and phase modulated pulses was not possible for EPR due to the three orders of magnitude faster timescale compared to NMR. In this work, for the first time, an AWG (arbitrary waveform generator) operating with a 1 ns time resolution and 14 bit amplitude resolution was implemented into a commercial Bruker pulsed EPR spectrometer.
First results were obtained with broadband excitation pulses derived by optimum control theory (OCT). The OCT-pulse used excites transverse magnetization with 98% efficiency over a more than four times larger bandwidth than common rectangular pulse generating the same 1 B field. The benefit of such a pulse was demonstrated for magnitude FT-EPR spectroscopy on organic radicals in liquid phase.
Due to Spectrometer deadtime an FID cannot be observed for most inhomogeneous spin systems. For that reason prefocused pulses have been evaluated for their applicability to EPR spectroscopy. OCT-derived prefocused pulses can be understood as a compact Hahn Echo sequence in one monolithic pulse. Here, two problems have been encountered. 1) The limited bandwidth of the active and passive microwave components in the excitation path as well as microwave resonator cause linear distortions of the pulse shape which results in inferior pulse performance. This could be circumvented by measuring the impulse response function of the whole spin excitation path and including this information in the pulse optimization procedure. 2) Anisotropic hyperfine interaction which was not taken into account during the pulse optimization also caused efficiency losses.
PELDOR spectroscopy is a valuable tool to measure distance distributions between two or more paramagnetic centers in the range from 2-8 nm. It is demonstrated that the S/N ratio of PELDOR experiments can be substantially increased by substituting the rectangular shaped pump pulse by an adiabatic inversion pulse. The damping of the dipolar oscillations introduced by the prolonged pump pulse towards shorter distances could be circumvented by introducing a second time reversed pump pulse.
By substituting the refocused echo of the well-known 4-pulse PELDOR with a CPMG sequence the dipolar evolution time and thus the validity of PELDOR experiments would be increased. To achieve the maximum dipolar evolution time in a CPMG PELDOR for each refocusing pulse one pump pulse has to be applied. This could only be achieved with the new adiabatic inversion pulses since multiple inversions with efficiency close to one are not possible with rectangular pulses. Even with adiabatic pump pulses a reduced efficiency was observed due to hardware limitations thus limiting the sequence to three refocusing pulses. An iterative method was developed to remove the residual dipolar signals attributed to the reduced inversion efficiency.
The new 7-pulse CPMG PELDOR sequence enabled measuring reliable distance distributions between the protomers of the trimeric betaine transporter BetP. With these it could be shown that the asymmetries found for the 2 and 3-dimensional crystal structures are even larger in frozen detergent.
Kempfidris : a new genus of myrmicine ants from the Neotropical region (Hymenoptera: Formicidae)
(2014)
The new genus Kempfidris gen. nov. is described based on the workers of a single species, K. inusualis comb. nov., from Brazil, Ecuador, and Venezuela. Kempfidris inusualis comb. nov. was originally described by Fernández (2007) and provisionally placed in Monomorium awaiting a better understanding of the internal relationships in Myrmicinae. Kempfidris gen. nov. has a series of distinctive morphological characters including the mandibular configuration, vestibulate propodeal spiracle, propodeal carinae, and cylindrical micro-pegs on the posteromedian portion of abdominal tergum VI and anteromedian portion of abdominal tergum VII. This last trait appears to be autapomorphic for the genus.
Solaenodolichopus Verhoeff, 1924 is redefined to include S. pruvoti (Brolemann, 1931), S. rubriventris Verhoeff, 1928, S. sulcatus (Verhoeff, 1928), S. teres (Verhoeff, 1924), S. vittatus (Verhoeff, 1924) and S. walesius Verhoeff, 1928, each of which is redescribed. Lectotypes are designated for S. sulcatus, S. teres, S. vittatus and S. walesius. Parwalesoma Verhoeff, 1937 is synonymised with Solaenodolichopus and S. vittatus dorsalis (Verhoeff, 1924) with S. vittatus vittatus (Verhoeff, 1924).
Tapinesthis inermis Simon, 1882, the only species in the genus, is widely distributed in western Europe. This redescription provides the first information on the ultrastructure of the species using SEM. The morphology of the spinnerets, tarsal claws and tarsal organs, and the internal structure of the female genitalia and the male palp are described and illustrated in detail. The combination of these structures is very similar to those encountered in some dysderoid spiders and supports the basal placement of Tapinesthis among Oonopinae. The phylogenetic relationships of the species are discussed. The only female among the three syntypes is designated as the lectotype.
This paper summarizes current knowledge about Central African pholcids. Central Africa is here defined as the area between 10°N and 7°S and between 6°E and 18°E, including mainly the Lower Guinean subregion of the Guineo-Congolian center of endemism. This includes all of Gabon, Equatorial Guinea, São Tomé and Príncipe, most of Cameroon and Congo Republic, and parts of the neighboring countries. An annotated list of the 14 genera and 79 species recorded from this area is given, together with distribution maps and an identification key to genera. Seven species are newly described: Anansus kamwai sp. nov., Leptopholcus gabonicus sp. nov., Ninetis faro sp. nov., Pholcus punu sp. nov., P. rawiriae sp. nov., Spermophora abibae sp. nov., and S. awalai sp. nov. Additional new records are given for 16 previously described species, including 17 new country records. Distribution and diversity patterns are compared with data on West and East Africa. While West Africa contains a similar set of genera it is significantly less diverse than Central Africa. East Africa is taxonomically more distinct. It has similar levels of diversity as Central Africa, but appears to be less undersampled.
Among the 125 currently recognized species of the panoceanic genus Leucothoe, L. antarctica was described in 1888 from the Antarctic seas, but was soon synonymized with the so-called cosmopolitan Leucothoe spinicarpa Abildgaard, which was cited from the Southern Ocean about 70 times since this first record. After erecting a new Antarctic species again only in 1983, “morphological variants” were observed and discussed. In this paper, we revalidate the first defined Antarctic species (Leucothoe antarctica), redescribe the second one (L. orkneyi), describe 5 new Southern Ocean species (L. campbelli sp. nov., L. longimembris sp. nov., L. macquariae sp. nov., L. merletta sp. nov. and L. weddellensis sp. nov.) and provide a key to all Antarctic and sub-Antarctic species.
Donald Siegel's 1971 film entitled "The Beguiled" is compared to Tale 1 of Day 3 from Giovanni Boccaccio’s "The Decameron". Both stories are about a man who arrives in a garden setting and finds nine sexually starved women. In Boccaccio's tale, a male gardener finds himself in a convent occupied by nine nuns with whom he proceeds to have sexual relations to everyone's satisfaction. Siegel's film is about a wounded soldier taken in at a girls' finishing school whose nine female residents become the objects of the hero's amorous attention. While Boccaccio adopts a philogynist tone with respect to the material, "The Beguiled" appears to be a virulently misogynist film projecting its female characters as jealous demons who end up mutilating and then killing their male suitor. Findings from evolutionary psychology pertaining to female jealousy and reproductive strategies are used to consider the respective attitudes toward women in the medieval tale and the twentieth-century film. Conclusions are drawn about the difficulty of placing either of the stories within a clear-cut philogynist or misogynist category.
The PANDA experiment at FAIR will perform world class physics studies using high-intensity cooled antiproton beams with momenta between 1.5 and 15 GeV/c. A rich physics program requires very good particle identification (PID). Charged hadron PID for the barrel section of the target spectrometer has to cover the angular range of 22-140° and separate pions from kaons for momenta up to 3.5 GeV/c with a separation power of at least 3 standard deviations. The system that will provide it has to be thin and operate in a strong magnetic field. A ring imaging Cherenkov detector using the DIRC principle meets those requirements. The design of the PANDA Barrel DIRC is based on the successful BABAR DIRC counter with several important changes to improve the performance and optimize the costs. The design options are being studied in detailed Monte Carlo simulation, and implemented in increasingly complex system prototypes and tested in particle beams. Before building the full system prototypes the radiator bars and lenses are measured on the test benches. The performance of the DIRC prototype was quantified in terms of the single photon Cherenkov angle resolution and the photon yield. Results for two full system prototypes will be presented. The prototype in 2011 aimed at investigating the full size expansion volume. It was found that the resolution for this configuration is at the level of in good agreement with ray tracing simulation results. A more complex prototype, tested in 2012, provided the first experience with a compact fused silica prism expansion volume, a wide radiator plate, and several advanced lens options for the focusing system. The performance of the baseline configuration of the prototype with a standard lens and an air gap met the requirements for the PANDA PID for most of the polar angle range but failed at polar angles around 90° due to photon loss at the air gap. Measurements with a prototype high-refractive index compound lens without an air gap at a polar angle of 128° beam angle showed a good resolution of σΘC = 11.8 ± 0.7 mrad and a high photon yield of Nph = 26.1 ± 0.4. Even at polar angles close to 90° the photon yield with this lens exceeded 15 detected photons per particle, meeting the PANDA Barrel DIRC PID requirements for the entire phase space and demonstrating that the compact focusing DIRC is a very promising option for PANDA.
We present the results of two-pion production in tagged quasi-free np collisions at a deutron incident beam energy of 1.25 GeV/c measured with the High-Acceptance Di-Electron Spectrometer (HADES) installed at GSI. The specific acceptance of HADES allowed for the first time to obtain high-precision data on π+π− and π−π0 production in np collisions in a region corresponding to large transverse momenta of the secondary particles. The obtained differential cross section data provide strong constraints on the production mechanisms and on the various baryon resonance contributions (∆∆, N(1440), N(1520), ∆(1600)). The invariant mass and angular distributions from the np → npπ+π −and np → ppπ−π0 reactions are compared with different theoretical model predictions.
We have measured the radiative neutron-capture cross section and the total neutron-induced cross section of one of the most important isotopes for the s process, the 25Mg. The measurements have been carried out at the neutron time-of-flight facilities n_TOF at CERN (Switzerland) and GELINA installed at the EC-JRC-IRMM (Belgium). The cross sections as a function of neutron energy have been measured up to approximately 300 keV, covering the energy region of interest to the s process. The data analysis is ongoing and preliminary results show the potential relevance for the s process.
The ab-initio molecular dynamics framework has been the cornerstone of computational solid state physics in the last few decades. Although it is already a mature field it is still rapidly developing to accommodate the growth in solid state research as well as to efficiently utilize the increase in computing power. Starting from the first principles, the ab-initio molecular dynamics provides essential information about structural and electronic properties of matter under various external conditions. In this thesis we use the ab-initio molecular dynamics to study the behavior of BaFe2As2 and CaFe2As2 under the application of external pressure. BaFe2As2 and CaFe2As2 belong to the family of iron based superconductors which are a novel and promising superconducting materials. The application of pressure is one of two key methods by which electronic and structural properties of iron based superconductors can be modified, the other one being doping (or chemical pressure). In particular, it has been noted that pressure conditions have an important effect, but their exact role is not fully understood. To better understand the effect of different pressure conditions we have performed a series of ab-initio simulations of pressure application. In order to apply the pressure with arbitrary stress tensor we have developed a method based on the Fast Inertial Relaxation Engine, whereby the unit cell and the atomic positions are evolved according to the metadynamical equations of motion. We have found that the application of hydrostatic and c axis uniaxial pressure induces a phase transition from the magnetically ordered orthorhombic phase to the non-magnetic collapsed tetragonal phase in both BaFe2As2 and CaFe2As2. In the case of BaFe2As2, an intermediate tetragonal non-magnetic tetragonal phase is observed in addition. Application of the uniaxial pressure parallel to the c axis reduces the critical pressure of the phase transition by an order of magnitude, in agreement with the experimental findings. The in-plane pressure application did not result in transition to the non-magnetic tetragonal phase and instead, rotation of the magnetic order direction could be observed. This is discussed in the context of Ginzburg-Landau theory. We have also found that the magnetostructural phase transition is accompanied by a change in the Fermi surface topology, whereby the hole cylinders centered around the Gamma point disappear, restricting the possible Cooper pair scattering channels in the tetragonal phase. Our calculations also permit us to estimate the bulk moduli and the orthorhombic elastic constants of BaFe2As2 and CaFe2As2.
To study the electronic structure in systems with broken translational symmetry, such as doped iron based superconductors, it is necessary to develop a method to unfold the complicated bandstructures arising from the supercell calculations. In this thesis we present the unfolding method based on group theoretical techniques. We achieve the unfolding by employing induced irreducible representations of space groups. The unique feature of our method is that it treats the point group operations on an equal footing with the translations. This permits us to unfold the bandstructures beyond the limit of translation symmetry and also formulate the tight-binding models of reduced dimensionality if certain conditions are met. Inclusion of point group operations in the unfolding formalism allows us to reach important conclusions about the two versus one iron picture in iron based superconductors.
And finally, we present the results of ab-initio structure prediction in the cases of giant volume collapse in MnS2 and alkaline doped picene. In the case of MnS2, a previously unobserved high pressure arsenopyrite structure of MnS2 is predicted and stability regions for the two competing metastable phases under pressure are determined. In the case of alkaline doped picene, crystal structures with different levels of doping were predicted and used to study the role of electronic correlations.