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Background: Tracks of pigeons homing to the Frankfurt loft revealed an odd phenomenon: whereas birds returning from the North approach their loft more or less directly in a broad front, pigeons returning from the South choose, from 25 km from home onward, either of two corridors, a direct one and one with a considerable detour to the West. This implies differences in the navigational process.
Methodology/Principle Findings: Pigeons released at sites at the beginning of the westerly corridor and in this corridor behave just like pigeons returning from farther south, deviating to the west before turning towards their loft. Birds released at sites within the straight corridors, in contrast, take more or less straight routes. The analysis of the short-term correlation dimension, a quantity reflecting the complexity of the system and with it, the number of factors involved in the navigational process, reveals that it is significantly larger in pigeons choosing the westerly corridor than in the birds flying straight - 3.03 vs. 2.85. The difference is small, however, suggesting a different interpretation of the same factors, with some birds apparently preferring particular factors over others.
Conclusions: The specific regional distribution of the factors which pigeons use to determine their home course seems to provide ambiguous information in the area 25 km south of the loft, resulting in the two corridors. Pigeons appear to navigate by deriving their routes directly from the locally available navigational factors which they interpret in an individual way. The fractal nature of the correlation dimensions indicates that the navigation process of pigeons is chaotic-deterministic; published tracks of migratory birds suggest that this may apply to avian navigation in general.
Background: Highly infectious diseases (HIDs) are (i) easily transmissible from person to person; (ii) cause a life-threatening illness with no or few treatment options; and (iii) pose a threat for both personnel and the public. Hence, even suspected HID cases should be managed in specialised facilities minimizing infection risks but allowing state-of-the-art critical care. Consensus statements on the operational management of isolation facilities have been published recently. The study presented was set up to compare the operational management, resources, and technical equipment among European isolation facilities. Due to differences in geography, population density, and national response plans it was hypothesized that adherence to recommendations will vary.
Methods and Findings: Until mid of 2010 the European Network for Highly Infectious Diseases conducted a cross-sectional analysis of isolation facilities in Europe, recruiting 48 isolation facilities in 16 countries. Three checklists were disseminated, assessing 44 items and 148 specific questions. The median feedback rate for specific questions was 97.9% (n = 47/48) (range: n = 7/48 (14.6%) to n = 48/48 (100%). Although all facilities enrolled were nominated specialised facilities' serving countries or regions, their design, equipment and personnel management varied. Eighteen facilities fulfilled the definition of a High Level Isolation Unit'. In contrast, 24 facilities could not operate independently from their co-located hospital, and five could not ensure access to equipment essential for infection control. Data presented are not representative for the EU in general, as only 16/27 (59.3%) of all Member States agreed to participate. Another limitation of this study is the time elapsed between data collection and publication; e.g. in Germany one additional facility opened in the meantime.
Conclusion: There are disparities both within and between European countries regarding the design and equipment of isolation facilities. With regard to the International Health Regulations, terminology, capacities and equipment should be standardised.
Introduction: On-treatment HCV RNA measurements are crucial for the prediction of a sustained virological response (SVR) and to determine treatment futility during protease inhibitor-based triple therapies. In patients with advanced liver disease an accurate risk/benefit calculation based on reliable HCV RNA results can reduce the number of adverse events. However, the different available HCV RNA assays vary in their diagnostic performance.
Aim: To investigate the clinical relevance of concordant and discordant results of two HCV RNA assays during triple therapy with boceprevir and telaprevir in patients with advanced liver fibrosis/cirrhosis.
Methods: We collected on-treatment samples of 191 patients with advanced liver fibrosis/cirrhosis treated at four European centers for testing with the Abbott RealTime (ART) and COBAS AmpliPrep/COBAS TaqMan HCV v2.0 (CTM) assays.
Results: Discordant test results for HCV RNA detectability were observed in 23% at week 4, 17% at week 8/12 and 9% at week 24 on-treatment. The ART detected HCV RNA in 41% of week 4 samples tested negative by the CTM. However, the positive predictive value of an undetectable week 4 result for SVR was similar for both assays (80% and 82%). Discordance was also found for application of stopping rules. In 27% of patients who met stopping rules by CTM the ART measured levels below the respective cut-offs of 100 and 1000 IU/ml, respectively, which would have resulted in treatment continuation. In contrast, in nine patients with negative HCV RNA by CTM at week 24 treatment would have been discontinued due to detectable residual HCV RNA by the ART assay. Importantly, only 4 of these patients failed to achieve SVR.
Conclusion: Application of stopping rules determined in approval studies by one assay to other HCV RNA assays in clinical practice may lead to over and undertreatment in a significant number of patients undergoing protease inhibitor-based triple therapy.
Wassergefiltertes Infrarot A (wIRA) als spezielle Form der Wärmestrahlung mit hohem Eindringvermögen in das Gewebe bei geringer thermischer Oberflächenbelastung fördert die Heilung akuter und chronischer Wunden sowohl über thermische und temperaturabhängige als auch über nichtthermische und temperaturunabhängige Effekte. Wassergefiltertes Infrarot A steigert die Temperatur (+2,7°C in einer Gewebetiefe von 2 cm) und den Sauerstoffpartialdruck im Gewebe (+32% in einer Gewebetiefe von 2 cm) und die Gewebedurchblutung. Diese 3 Faktoren sind entscheidend für eine ausreichende Versorgung des Gewebes mit Energie und Sauerstoff und deshalb auch für Wundheilung und Infektionsabwehr. Wassergefiltertes Infrarot A hilft sowohl bei der normalen als auch bei der gestörten Wundheilung, indem es Entzündungsreaktionen und erhöhte Wundsekretion mindert, Infektionsabwehr und Regeneration fördert und Wundschmerzen lindern helfen kann. Die genannten Effekte wurden in insgesamt 7 prospektiven Studien (davon 6 randomisierten kontrollierten Studien) belegt, die meisten mit einem Evidenzgrad von Ia bzw. Ib. Die hier zusätzlich dargestellten Fallbeispiele komplizierter Wundheilungsverläufe illustrieren die belegten Wirkungen von wIRA. Nicht nur in den hier gezeigten 6 Fällen wendeten die Bestrahlungen mit wIRA komplizierte Wundheilungsverläufe zum Besseren und ermöglichten nach ganz unterschiedlich langen Gesamtdauern der Bestrahlungen (in den 6 Fällen: von 51–550 h) und nach verschieden langen Gesamtdauern der Wundpflege, meist nach Transplantation von Spalthautgittern, die Heilung der Wunden. Bei komplizierten Wundheilungsverläufen ersetzt wIRA nicht den Rat und ggf. auch die Behandlung eines erfahrenen plastischen Chirurgen und eines Chirurgen mit der Spezialisierung in septischer Chirurgie. Mit dieser Einschränkung kann wIRA als wertvolle Ergänzung der Behandlung von akuten und chronischen Wunden empfohlen werden.
A phytosociological survey of weed (segetal) vegetation in Slovakia was performed. A total of 508 relevés were sampled in 2002–2008. The aims of this study were to determine the actual distribution of the segetal communities, to analyze their floristic structure, and to evaluate their relationships to selected environmental factors. Thirteen plant communities of the class Stellarietea mediae were distinguished by cluster analysis; 11 communities were included in the subclass Violenea arvensis (Lathyro tuberosi-Adonidetum aestivalis, Consolido-Anthemidetum austriacae, Euphorbio exiguae-Melandrietum noctiflori, Veronicetum trilobae-triphyllidi, Lamio amplexicauli-Thlaspietum arvensis, Taraxacum sect. Ruderalia community, Spergulo arvensis-Scleranthetum annui, Myosotido-Sonchetum arvensis, Echinochloo-Setarietum pumilae, Galinsogo-Setarietum, and Stachyo annui-Setarietum pumilae) and two in the subclass Sisymbrienea (Portulacetum oleraceae and Setario viridis-Erigeronetum canadensis). Communities were characterized by diagnostic, constant, and dominant species and their structure, ecology, and distribution were estimated. The species composition of these communities was documented in synoptic and association tables. DCA ordination and analysis of variance was used to determine the main environmental factors of floristic differentiation and to determine ecological and structural differences among the communities. The analyses showed that the most important factors affecting floristic composition and classification of the weed communities are their time of development (agroecophase), the type of crops and altitude.
Bestände, die von Calamagrostis epigejos dominiert werden, gehören zu den charakteristischen Elementen der Vegetation im östlichen Mitteleuropa. In der Literatur wurden Calamagrostis epigejos-Gesellschaften bisher meist als monoton, artenarm und wenig divers beschrieben. Für den Berliner Raum wurden 54 Vegetationsaufnahmen von Brachflächen und ehemaligen Rieselfeldern ausgewertet, in denen C. epigejos dominant war (Deckung >25 %). Die C. epigejos-Dominanzbestände konnten hauptsächlich zwei Gesellschaften zugeordnet werden: der Calamagrostis epigejos-(Galio-Urticetea)-Gesellschaft und der Calamagrostis epigejos-(Onopordetalia/Agropyretalia)-Gesellschaft. Die Calamagrostis epigejos-(Galio-Urticetea)-Gesellschaft wächst auf nährstoffreichen, frischen bis nassen, zum Teil auch zeitweilig überstauten Flächen. Derartige Standortverhältnisse sind vor allem auf eutrophierten ehemaligen Rieselfeldern zu finden. Die Bestände der Calamagrostis epigejos-(Onopordetalia/Agropyretalia)-Gesellschaft kommen auf nährstoffärmeren und trockeneren Standorten vor. Für die mittleren F- und N-Zeigerwerte ergeben sich jeweils signifikante Unterschiede von 1,4 Stufen zwischen beiden Gesellschaften; für die mittleren R-Zeigerwerte beträgt der Unterschied 0,4 Stufen.
River corridor plants in Central Europe account for an above-average proportion of endangered species. The main objective of this study was to examine the effects of habitat fragmentation and abiotic conditions on the survival and changes in population size of four endangered, long-lived river corridor plant species (Euphorbia palustris, Pseudolysimachion longifolium, Sanguisorba officinalis, and Senecio paludosus) over the course of at least ten years. We sampled altogether 138 populations in the Weser and Elbe river systems in Northwestern Germany.
Overall, 33% of the populations went extinct during the study period. Extinction rates and changes in population size were related to initial population sizes, but not to population isolation and only marginally so to habitat quality. Large populations (> 100 individuals) had a much higher probability to survive or increase in size (to > 1000 individuals) than smaller populations. There was no general decline in population size in surviving populations, and extinction rates and changes in population size were independent of time. We therefore conclude that the high extinction rates in small populations are best explained by sudden short-term environmental events, such as changes in land use, rather than by long-term negative effects of, for example, genetic deterioration. A projection matrix for the next 117 years, however, predicted that 85% of the surveyed populations will have gone extinct. Since any establishment of new populations in the study area is unlikely owing to the lack of potential habitats and dispersal limitation, river corridor plants will probably continue to decline. Apart from preventing further habitat deterioration it will be crucial to maintain or establish an appropriate management, and to avoid sudden and adverse changes in land use.
Die vorliegende Arbeit liefert ein Kurzportrait von Botrychium simplex und beschreibt zunächst die biologischen Besonderheiten und die Verbreitung in Deutschland. In einem dritten Teil wird eine demographische Studie vorgestellt und über Langzeitbeobachtungen an der aktuell einzigen deutschen Population (in der Senne, Nordrhein-Westfalen) berichtet. Wie bei allen Mondrauten keimen bei B. simplex die Sporen im Boden, und die Gametophyten entwickeln sich nur weiter, wenn sie von einem arbuskulären Mykorrhizapilz infiziert wurden; auch die Sporophyten sind mykotroph. Typisch sind ein- oder auch mehrjährige Ruheperioden, in denen bei einzelnen Pflanzen keine oberirdischen Organe gebildet werden. Als kleinwüchsige und konkurrenzschwache Art ist B. simplex auf lückige und kurzrasige Pflanzengesellschaften angewiesen. Die morphologische Variabilität der Blätter ist ungewöhnlich groß, und vor allem die Form des sterilen Abschnitts ist vielgestaltig. Von den mehreren in Nordamerika unterschiedenen Varietäten kommt neben der häufigeren var. simplex auch var. tenebrosum in Mitteleuropa vor. Botrychium simplex ist eine Art der gemäßigten bis kühl-gemäßigten Zone mit einem Areal, das Europa, Nordamerika sowie Indien und Japan einschließt. In Deutschland sind Vorkommen aus 3 Jahrhunderten und auf 12 Messtischblättern belegt. Die Funde konzentrieren sich auf das 19. Jahrhundert; aus dem 20. Jahrhundert stammen lediglich 5 Angaben.
Wet meadows are transitional habitats between wetlands and dry-mesophilous grasslands; thus, they are vital in sustaining biodiversity as sources, stepping stones and green corridors of species dispersal. It is especially valid for inland alkali vegetation, where high landscapescale patchiness is typical and rapid shifts between vegetation types occur frequently. Solonetz meadows (Beckmannion eruciformis) are among the bestpreserved open habitats in Europe harbouring a unique flora including several endemics. Besides their importance, studies on the vegetation of solonetz meadows are scarce even though this knowledge would be vital for their effective conservation and management. Using own records and literature data, we provide a synthesis of the alliance Beckmannion eruciformis to characterise its associations floristically and ecologically in five regions along the river Tisza, East Hungary. We studied three associations of the alliance: (i) Agrostio stoloniferae-Alopecuretum pratensis, (ii) Agrostio stoloniferae-Beckmannietum eruciformis and (iii) Agrostio stoloniferae-Glycerietum pedicellatae. We found that solonetz meadow associations were separated along a moisture gradient with Agrostio stoloniferae-Alopecuretum pratensis at the drier end and Agrostio stoloniferae-Glycerietum pedicellateae at the wet end. This gradient was also justified by the distribution of the phytosociological groups. The proportion of species of Festuco-Brometea division was the highest in Agrostio stoloniferae-Alopecuretum pratensis, while the proportion of Cypero-Phragmitetea species was the highest in Agrostio stoloniferae-Glycerietum pedicellateae. Species of Puccinellio-Salicornetea had the highest proportion in Agrostio stoloniferae-Beckmannietum eruciformis, indicating the high soil salinity of this association. Our results suggest that Agrostio stoloniferae-Alopecuretum pratensis association plays an important role in preserving the continental flora elements of the surrounding dry grasslands. The ecological indicator values for soil moisture and salinity suggest that in case of the studied solonetz meadow associations, humidity increases with decreasing elevation, while salinity is highest at medium elevations. Our results suggest that Agrostio stoloniferae-Beckmannietum eruciformis is a transition towards salt marsh associations, while Agrostio stoloniferae-Glycerietum pedicellatae is a transition towards freshwater marshes. Our results show that preserving solonetz meadows is an important task for nature conservation as they have a crucial role in maintaining landscapescale species and habitat diversity and act as buffer zones around wetlands.
In Luxemburg sind infolge von Landnutzungsintensivierungen nur noch wenige Relikte nährstoffarmer Feuchthabitate mit hohem Naturschutzwert erhalten. Eine kleinräumig differenzierte Untersuchung der Zusammenhänge zwischen Bodenfaktoren und Vegetation stand für diese Relikte bisher aus. Aus diesem Grund wurden in fünf Luxemburger Niedermoorkomplexen Vegetationszusammensetzung, Vegetationsstruktur (90 %-Perzentil der Vegetationshöhe, Streudeckung) und für die Pflanzenernährung relevante, bodenchemische Variablen (pH-Wert, Phosphor-, Kalium-, Calcium-, Magnesium-Gehalt) erfasst sowie Ellenberg-Zeigerwerte (Feuchte- und Nährstoff-Zahl) ausgewertet. Dabei ging es insbesondere um die Klärung der Fragen, welche Umweltgradienten der auffälligen Zonierung in Kern- und Randbereiche zugrunde liegen und welche Habitateigenschaften mit der Anzahl von gefährdeten Arten korrelieren. Hierzu wurden insgesamt 74 Kleinflächen in den beiden Zonen angelegt und floristisch sowie bodenchemisch analysiert.
Die Kleinflächen spannten einen Säuregradienten von annähernd drei pH-Stufen über die Gebiete hinweg auf (pH 3,9–6,5). Es ließen sich floristische, strukturelle und bodenchemische Unterschiede zwischen den Zonen ausmachen. In den meisten Gebieten unterschieden sich Diversität (in Kernbereichen erhöht) und Produktivität (nach Maßgabe von 90 %-Perzentil und Nährstoff-Zahl in Randbereichen erhöht). Die bodenchemischen Variablen zeigten je nur in einzelnen Gebieten Zonenunterschiede. Die beiden Gebiete mit den niedrigsten bzw. höchsten pH-Werten wiesen die meisten Variablen mit signifikanten Zonenunterschieden auf. Die Feuchte-Zahl war in keinem Gebiet zonenkennzeichnend. Die Diversität an bedrohten Arten korrelierte am häufigsten mit dem Magnesiumgehalt im Boden (meist positiv) und dem 90 %-Perzentil (stets negativ).
Unsere Ergebnisse legen nahe, dass in den untersuchten Niedermoorkomplexen mehrere Variablen zugleich und in unterschiedlicher Kombination für die Zonation verantwortlich sein könnten. Es werden Managementoptionen für die gefährdeten Gebiete diskutiert.
Fluctuations of the water level at the edges of temporary water bodies provide favourable living conditions for annual plant communities of the phytosociological class Isoëto-Nanojuncetea. Such communities of periodically flooded ponds within the agricultural landscape of NE Germany are particularly rich in rare plant species of that class. During the past decades drainage, fertilisation and herbicides in the surrounding arable fields have led to a severe decline in diversity of these species. To develop efficient conservation strategies it is essential to understand the factors driving the species composition. Therefore, we studied how varying water regimes, soil properties and agricultural practices affect the diversity and species composition of these temporary ponds. The study was carried out in seven ponds on a conventionally managed farm in NE Brandenburg. At each of these wetlands mixed soil samples were taken to determine the pH, total nitrogen and phosphorus concentration. The plant species were recorded in 177 plots, each covering 1 x 1 m2. For each plot, the water level was recorded in April, July and August 2013, respectively, resulting in five "water level regimes". Total species number and percentages of Isoëto-Nanojuncetea species were determined per plot, to evaluate water level effects on the vegetation. In addition, mean Ellenberg indicator values for light, moisture and nutrients were calculated to assess the environmental conditions.
Large herbivores are significant vectors for the long distance dispersal of seeds in various habitats, both attached to animals (epizoochory) and via gut passage (endozoochory). The majority of studies on epizoochory have examined dispersal in the fur of domesticated ungulates. Studies on wild ungulates are important to understand dispersal processes in many habitats, but rare due to methodological constraints. We studied epizoochory of seeds by European bison in an open-forest-mosaic (nutrient poor grassland and heathland, mixed forest) in NW Germany, where bison had been introduced for the purpose of nature conservation. At the study site it was possible to apply a method by which hoof material of freeranging bison was non-invasively collected. We identified a total of 1082 seeds from 32 plant species in the hoof material. The three most abundant species were Polygonum aviculare, Agrostis capillaris and Betula spp. Seed species originated from various habitat types of the study area, while the majority of seeds derived from trampled areas. Compared to the non-dispersed plant species of the study area, dispersed plant species had a higher seed longevity index, suggesting that many seeds were picked up from the soil seed bank. Epizoochory ranking indices of dispersed seed species, classifying the importance of epizoochory, revealed that transport in the fur may be of minor importance for many species, i.e. epizoochory by the hooves turned out to be negatively correlated to epizoochory in the fur. We conclude that European bison disperses a considerable number of seed species through trampling. Further research should consider epizoochory via the hooves and include integrative approaches to understand the different dispersal mechanisms by ungulates and their longterm synergetic effect on plant communities.
Sekundärsukzession auf Kahlschlagflächen eines Buchenwaldes : Dauerflächenuntersuchungen 1971–2013
(2014)
Im Winter 1970/71 wurde durch den Göttinger Wald eine breite Schneise für ein neues Straßenbauprojekt geschlagen. Hier wurden im Sommer 1971 zwei Dauerflächen (F1, F2, je 8 x 8 m²) eingerichtet. Nachdem der Straßenbau aufgegeben wurde, konnten die Flächen mit ihrer natürlichen Sukzession bis heute kontinuierlich pflanzensoziologisch untersucht werden. Alljährlich wurden zweimal Vegetationsaufnahmen im Frühling und Sommer, vorwiegend mit Schätzung des Deckungsgrades der Schichten und Arten durchgeführt. Für die Auswertung über 43 Jahre wurden die Aufnahmedaten in Tabelle 1 und 2 als Beilage für jeweils mehrere Jahre mit Angaben von absoluter Stetigkeit und Deckungsgrad-Median zusammengefasst und mit einer aktuellen Aufnahme des benachbarten Buchenwaldes verglichen.
Ein im Jahr 2012 in Bayern verabschiedetes Naturwaldreservats-Forschungskonzept weist 26 der insgesamt 159 Reservate als Schwerpunktreservate für die künftige Dauerbeobachtung aus. 2013 wurden in vier der 26 Schwerpunktreservate erste Dauerbeobachtungsflächen eingerichtet. Alle Probeflächen liegen innerhalb von 1 ha großen Repräsentationsflächen der Schwerpunktreservate und umfassen jeweils 6 Probekreise mit einem Radius von 10 m (314 m2). Der Kreismittelpunkt wurde fest vermarkt; auf jedem der Probekreise wurde eine pflanzensoziologische Aufnahme nach Braun-Blanquet (1964) angefertigt.
Das Konzept des geplanten Langzeit-Monitorings der Waldbestände wird vorgestellt, Auswertungswege werden skizziert und an Hand der ersten in 2013 erhobenen Daten erläutert. Da die erhobenen Daten räumlich stark autokorreliert sind, wurden sie in einen für die Waldfläche Bayerns repräsentativen Referenzdatensatz eingehängt. Dieser besteht aus von Ewald (2009) für die pnV-Einstufung an 313 Probepunkten der nationalen Bodenzustandserhebung (BZE II) im 8 x 8 km Grundraster definierten Partneraufnahmen in den jeweils nächstgelegenen Naturwaldreservaten. Mittels Entzerrter Korrespondenzanalyse (DCA) wurden Aufnahme-Verteilungsmuster ermittelt. Der Referenzdatensatz ermöglichte eine objektive Waldgesellschafts-Zuordnung jeder Vegetationsaufnahme, indem die größte floristische Übereinstimmung zu einer Referenzaufnahme errechnet wurde. Die weitere Charakterisierung erfolgte anschließend über pflanzensoziologische Tabellenarbeit.
Die in je zwei Naturwaldreservaten im Hügelland Nord- und Südbayerns neu erhobenen Daten beinhalten Buchenwälder auf Kalk (Hordelymo-Fagetum) und Silikatstandorten (Galio- und Luzulo-Fagetum), Hangmischwälder (Adoxo-Aceretum) und Auwälder (Pruno-Fraxinetum, Querco-Ulmetum). Der vorherrschende Nährstoff- und Basengradient entspricht dem floristischen Hauptgefälle im gesamtbayerischen Referenzdatensatz. Ebenso wurde ein Gefälle von Wärmezeigern auf der 2. Achse in beiden Datensätzen (Referenzdatensatz und neu erhobene Daten) abgebildet. Im Falle der neu erhobenen Daten erscheint das Temperaturgefälle allerdings als Pseudo-Effekt, der durch Nadelholzanbau (mit-)verursacht ist. Die Möglichkeiten der Datenauswertung werden in den nächsten zwei Jahrzehnten sukzessive ansteigen. In dem bis 2022 vollständig erstinventarisierten Gesamtset der 26 Schwerpunkt-reservate wird künftig die Beobachtung der Dynamik innerhalb der Buchenwälder ebenso möglich sein wie im Randbereich sowie jenseits der Höhen-, Trocken- oder Nässegrenze der Buche.
Translation of mRNA into a polypeptide chain is a highly accurate process. Many prokaryotic and eukaryotic viruses, however, use leaky termination of translation to optimize their coding capacity. Although growing evidence indicates the occurrence of ribosomal readthrough also in higher organisms, a biological function for the resulting extended proteins has been elucidated only in very few cases. Here, we report that in human cells programmed stop codon readthrough is used to generate peroxisomal isoforms of cytosolic enzymes. We could show for NAD-dependent lactate dehydrogenase B (LDHB) and NAD-dependent malate dehydrogenase 1 (MDH1) that translational readthrough results in C-terminally extended protein variants containing a peroxisomal targeting signal 1 (PTS1). Efficient readthrough occurs at a short sequence motif consisting of a UGA termination codon followed by the dinucleotide CU. Leaky termination at this stop codon context was observed in fungi and mammals. Comparative genome analysis allowed us to identify further readthrough-derived peroxisomal isoforms of metabolic enzymes in diverse model organisms. Overall, our study highlights that a defined stop codon context can trigger efficient ribosomal readthrough to generate dually targeted protein isoforms. We speculate that beyond peroxisomal targeting stop codon readthrough may have also other important biological functions, which remain to be elucidated.
Dendritic morphology has been shown to have a dramatic impact on neuronal function. However, population features such as the inherent variability in dendritic morphology between cells belonging to the same neuronal type are often overlooked when studying computation in neural networks. While detailed models for morphology and electrophysiology exist for many types of single neurons, the role of detailed single cell morphology in the population has not been studied quantitatively or computationally. Here we use the structural context of the neural tissue in which dendritic trees exist to drive their generation in silico. We synthesize the entire population of dentate gyrus granule cells, the most numerous cell type in the hippocampus, by growing their dendritic trees within their characteristic dendritic fields bounded by the realistic structural context of (1) the granule cell layer that contains all somata and (2) the molecular layer that contains the dendritic forest. This process enables branching statistics to be linked to larger scale neuroanatomical features. We find large differences in dendritic total length and individual path length measures as a function of location in the dentate gyrus and of somatic depth in the granule cell layer. We also predict the number of unique granule cell dendrites invading a given volume in the molecular layer. This work enables the complete population-level study of morphological properties and provides a framework to develop complex and realistic neural network models.
Freshwater ecosystems are increasingly impacted by alien invasive species which have the potential to alter various ecological interactions like predator-prey and host-parasite relationships. Here, we simultaneously examined predator-prey interactions and parasitization patterns of the highly invasive round goby (Neogobius melanostomus) in the rivers Rhine and Main in Germany. A total of 350 N. melanostomus were sampled between June and October 2011. Gut content analysis revealed a broad prey spectrum, partly reflecting temporal and local differences in prey availability. For the major food type (amphipods), species compositions were determined. Amphipod fauna consisted entirely of non-native species and was dominated by Dikerogammarus villosus in the Main and Echinogammarus trichiatus in the Rhine. However, the availability of amphipod species in the field did not reflect their relative abundance in gut contents of N. melanostomus. Only two metazoan parasites, the nematode Raphidascaris acus and the acanthocephalan Pomphorhynchus sp., were isolated from N. melanostomus in all months, whereas unionid glochidia were only detected in June and October in fish from the Main. To analyse infection pathways, we examined 17,356 amphipods and found Pomphorhynchus sp. larvae only in D. villosus in the river Rhine at a prevalence of 0.15%. Dikerogammarus villosus represented the most important amphipod prey for N. melanostomus in both rivers but parasite intensities differed between rivers, suggesting that final hosts (large predatory fishes) may influence host-parasite dynamics of N. melanostomus in its introduced range.
Pseudoperonospora cubensis, an obligate biotrophic oomycete causing devastating foliar disease in species of the Cucurbitaceae family, was never reported in seeds or transmitted by seeds. We now show that P. cubensis occurs in fruits and seeds of downy mildew-infected plants but not in fruits or seeds of healthy plants. About 6.7% of the fruits collected during 2012–2014 have developed downy mildew when homogenized and inoculated onto detached leaves and 0.9% of the seeds collected developed downy mildew when grown to the seedling stage. This is the first report showing that P. cubensis has become seed-transmitted in cucurbits. Species-specific PCR assays showed that P. cubensis occurs in ovaries, fruit seed cavity and seed embryos of cucurbits. We propose that international trade of fruits or seeds of cucurbits might be associated with the recent global change in the population structure of P. cubensis.
Halophilic archaea cultivated from surface sterilized middle-late Eocene rock salt are polyploid
(2014)
Live bacteria and archaea have been isolated from several rock salt deposits of up to hundreds of millions of years of age from all around the world. A key factor affecting their longevity is the ability to keep their genomic DNA intact, for which efficient repair mechanisms are needed. Polyploid microbes are known to have an increased resistance towards mutations and DNA damage, and it has been suggested that microbes from deeply buried rock salt would carry several copies of their genomes. Here, cultivable halophilic microbes were isolated from a surface sterilized middle-late Eocene (38–41 million years ago) rock salt sample, drilled from the depth of 800 m at Yunying salt mine, China. Eight unique isolates were obtained, which represented two haloarchaeal genera, Halobacterium and Halolamina. We used real-time PCR to show that our isolates are polyploid, with genome copy numbers of 11–14 genomes per cell in exponential growth phase. The ploidy level was slightly downregulated in stationary growth phase, but the cells still had an average genome copy number of 6–8. The polyploidy of halophilic archaea living in ancient rock salt might be a factor explaining how these organisms are able to overcome the challenge of prolonged survival during their entombment.
Background: Emergency ultrasound is gaining importance in medical education. Widespread teaching methods are frontal presentations and hands-on training. The primary goal of our study was to evaluate the impact of frontal presentations (PS) by analysis of retained knowledge rate (RKR) and learning load (LL).
Methods: Our study was conducted during four introductory courses in emergency ultrasound covering Extended Focused Assessment with Sonography for Trauma (E-FAST) and Focused Echocardiography Evaluation in Life Support (FEEL). Standardized PS (length of 10 to 50 min) were presented by experienced trainers, who were asked to provide keywords, key messages, and images and assign a score to each. Group 1 consisted of 11 medical students with no prior ultrasound experience, and group 2 consisted of 80 physicians. Each group was audience to seven to eight standard PS and requested to answer a free text questionnaire after 0 h, 2.5 h, 24 h, and 14 days.
Results: In group 1, 168/176 questionnaires were analyzed, and 161/202 were analyzed in group 2. RKR in group 1 was 32.5%, 15%, 16%, and 12% at 0 h, 2.5 h, 24 h, and 2 weeks. The physicians' RKR were 23%, 20.5%, and 22.4% after 0, 2.5, and 24 h of a respective PS. The LL was 1.6/min for students and 1.2/min for physicians. There was no difference in RKR when comparing PS with higher and lower LL for both groups; shorter or case-based PS were associated with a higher RKR (p < 0.01).
Conclusions: Our study provides evidence that only a limited amount of information can be processed at a time. Only 12% of knowledge is retained after 2 weeks. Presentations of short duration can increase the retained knowledge rate. Therefore, frontal presentations and classroom-based ultrasound training and teaching should be adapted.