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Tracking influenza a virus infection in the lung from hematological data with machine learning
(2022)
The tracking of pathogen burden and host responses with minimal-invasive methods during respiratory infections is central for monitoring disease development and guiding treatment decisions. Utilizing a standardized murine model of respiratory Influenza A virus (IAV) infection, we developed and tested different supervised machine learning models to predict viral burden and immune response markers, i.e. cytokines and leukocytes in the lung, from hematological data. We performed independently in vivo infection experiments to acquire extensive data for training and testing purposes of the models. We show here that lung viral load, neutrophil counts, cytokines like IFN-γ and IL-6, and other lung infection markers can be predicted from hematological data. Furthermore, feature analysis of the models shows that blood granulocytes and platelets play a crucial role in prediction and are highly involved in the immune response against IAV. The proposed in silico tools pave the path towards improved tracking and monitoring of influenza infections and possibly other respiratory infections based on minimal-invasively obtained hematological parameters.
The equilibration of hot and dense nuclear matter produced in the central region in central Au+Au collisions at square root s = 200A GeV is studied within the microscopic transport model UrQMD. The pressure here becomes isotropic at t approx 5 fm/c. Within the next 15 fm/c the expansion of the matter proceeds almost isentropically with the entropy per baryon ratio S/A approx 150. During this period the equation of state in the (P, epsilon)-plane has a very simple form, P = 0.15 epsilon. Comparison with the statistical model (SM) of an ideal hadron gas reveals that the time of approx 20 fm/c may be too short to attain the fully equilibrated state. Particularly, the fractions of resonances are overpopulated in contrast to the SM values. The creation of such a long-lived resonance-rich state slows down the relaxation to chemical equilibrium and can be detected experimentally.
Dilepton spectra are calculated within the microscopic transport model UrQMD and compared to data from the CERES experiment. The invariant mass spectra in the region between 300 MeV and 600 MeV depend strongly on the mass dependence of the rho meson decay width which is not sufficiently determined by the Vector Meson Dominance model. A consistent explanation of both the recent Pb+Au data and the proton induced data can be given without additional medium effects.
The pion source as seen through HBT correlations at RHIC energies is investigated within the UrQMD approach. We find that the calculated transverse momentum, centrality, and system size dependence of the Pratt-HBT radii R_L and R_S are reasonably well in line with experimental data. The predicted R_O values in central heavy ion collisions are larger as compared to experimental data. The corresponding quantity sqrt R_O^2-R_S^2 of the pion emission source is somewhat larger than experimental estimates.
Based on the UrQMD transport model, the transverse momentum and the rapidity dependence of the Hanbury-Brown-Twiss (HBT) radii R_L, R_O, R_S as well as the cross term R_OL at SPS energies are investigated and compared with the experimental NA49 and CERES data. The rapidity dependence of the R_L, R_O, R_S is weak while the R_OL is significantly increased at large rapidities and small transverse momenta. The HBT "life-time" issue (the phenomenon that the calculated sqrt R_O^2-R_S^2 value is larger than the correspondingly extracted experimental data) is also present at SPS energies.
Properties of dense quark matter in and out of chemical equilibrium are studied within the SU(3) Nambu Jona-Lasinio model. In addition to the 4 fermion scalar and vector terms the model includes also the 6 fermion flavour mixing interaction. First we study a novel form of deconfined matter, meso-matter, which is composed of equal number of quarks and antiquarks. It can be thought of as a strongly compressed meson gas where mesons are melted into their elementary constituents, quarks and antiquarks. Strongly bound states in this quark antiquark matter are predicted for all flavour combinations of qq pairs. The maximum binding energy reaches up to 180 MeV per qq pair for mixtures with about 70% of strange (s¯s) pairs. Equilibrated baryon rich quark matter with various flavour compositions is also studied. In this case only shallow bound states appear in systems with a significant admixture(about 40%) of strange quarks (strangelets). Their binding energies are quite sensitive to the relative strengths of scalar and vector interactions. The common property of all these bound states is that they appear at high particle densities when the chiral symmetry is nearly restored. Thermal properties of meso-matter as well as chemically equilibrated strange quark matter are also investigated. Possible decay modes of these bound states are discussed.
Conventional cluster and virial expansions are generalized to momentum dependent interparticle potentials. The model with Lorentz contracted hard core potentials is considered, e.g. as hadron gas model. A Van der Waals-type model with a temperature dependent excluded volume is derived. Lorentz contraction effects at given temperature are stronger for light particles and make their effective excluded volume smaller than that of heavy ones.