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Background: High baseline levels of IP-10 predict a slower first phase decline in HCV RNA and a poor outcome following interferon/ribavirin therapy in patients with chronic hepatitis C. Several recent studies report that single nucleotide polymorphisms (SNPs) adjacent to IL28B predict spontaneous resolution of HCV infection and outcome of treatment among HCV genotype 1 infected patients. Methods and Findings: In the present study, we correlated the occurrence of variants at three such SNPs (rs12979860, rs12980275, and rs8099917) with pretreatment plasma IP-10 and HCV RNA throughout therapy within a phase III treatment trial (HCV-DITTO) involving 253 Caucasian patients. The favorable SNP variants (CC, AA, and TT, respectively) were associated with lower baseline IP-10 (P = 0.02, P = 0.01, P = 0.04) and were less common among HCV genotype 1 infected patients than genotype 2/3 (P<0.0001, P<0.0001, and P = 0.01). Patients carrying favorable SNP genotypes had higher baseline viral load than those carrying unfavorable variants (P = 0.0013, P = 0.029, P = 0.0004 respectively). Among HCV genotype 1 infected carriers of the favorable C, A, or T alleles, IP-10 below 150 pg/mL significantly predicted a more pronounced reduction of HCV RNA from day 0 to 4 (first phase decline), which translated into increased rates of RVR (62%, 53%, and 39%) and SVR (85%, 76%, and 75% respectively) among homozygous carriers with baseline IP-10 below 150 pg/mL. In multivariate analyses of genotype 1-infected patients, baseline IP-10 and C genotype at rs12979860 independently predicted the first phase viral decline and RVR, which in turn independently predicted SVR. Conclusions: Concomitant assessment of pretreatment IP-10 and IL28B-related SNPs augments the prediction of the first phase decline in HCV RNA, RVR, and final therapeutic outcome.
In Ergänzung zu einem vorangegangenen Projekt (Schönwiese et al., 2005) ist in der vorliegenden Studie eine weitere extremwertstatistische Untersuchung durchgeführt worden. Dazu wurden auf der Basis von täglichen Klimadaten aus Hessen und Umgebung (49°N bis 52°N, 7°O bis 11°O), und zwar der Temperatur von 53 Stationen und des Niederschlages von 84 Stationen, Schwellen extremer Werte definiert, um die Anzahl der Über- bzw. Unterschreitungen dieser Schwellen auf signifikante Trends hin zu untersuchen. Bei der Temperatur findet sich dabei eine systematische Zunahme von Hitzetagen (Maximumtemperatur über 30 °C) im August, wohingegen im Juli fast keine, und im Juni nur vereinzelt signifikante Zunahmen von Hitzetagen gefunden wurden. Hierbei zeigt sich, wie auch bei anderen Temperatur-Schwellen eine Abnahme der Signifikanz mit zunehmender Schwellenhöhe, was durch selteneres Auftreten besonders extremer Ereignisse verursacht wird. Im Winter und Frühjahr hat entsprechend die Anzahl der Frost- bzw. Eistage (Minimum- bzw. Maximumtemperatur unter 0 °C) signifikant abgenommen. Besonders ausgeprägt ist dies für die Frosttage im Frühling der Fall. Beim Niederschlag hat im Sommer, wiederum vor allem im August, die Anzahl von Trockentagen zugenommen. Extrem hohe Niederschlagssummen sind dagegen in dieser Jahreszeit seltener geworden, in den anderen Jahreszeiten jedoch häufiger. Vor allem der März zeichnet sich durch verbreitet hochsignifikante Zunahmen von Tagen mit Starkniederschlägen aus. Die Erhaltungsneigung von besonders warmen bzw. kalten Witterungen hat sich in den meisten Monaten nicht signifikant verändert. Es ist jedoch eine Neigung zu kürzeren relativ einheitlichen Witterungsabschnitten im Februar und März, sowie zu längeren im Oktober und November zu beobachten. Diese Ergebnisse sind jedoch vermutlich nicht sehr robust, da sich bei einer Verkürzung des Zeitfensters der Autokorrelationsfunktion die Signifikanzen teilweise (vor allem im April) deutlich verändern. Bei den Trends der Zahl der Trockenperioden erkennt man im Sommer einen positiven Trend; sie nehmen somit zu. Dies gilt sowohl für die 7-tägigen als auch für die 11-tägigen Trockenperioden. Die übrigen Jahreszeiten zeigen bei den 7-tägigen Trockenperioden nur schwache oder negative Trends. Bei den 11-tägigen Trockenperioden gilt dies nur für das Frühjahr und den Herbst, im Winter sind die Trends im Norden überwiegend positiv, im Süden negativ. Betrachtet man die Länge der längsten Trockenperioden, so nimmt diese im Sommer zu, im Frühjahr und im Gesamtjahr jedoch ab. Im Herbst ist das Bild uneinheitlich; dies kann aber auch daran liegen, dass lange sommerliche Trockenperioden in den Herbst hineinreichen und dann dort gezählt werden. Ein weiterer Aspekt ist die Analyse der Anzahl und Länge bestimmter Witterungsabschnitte (Clusteranalyse), die durch relativ hohe oder tiefe Temperatur bzw. relativ wenig bzw. viel Niederschlag definiert sind. So können beispielsweise Tage mit weniger als 1 mm Niederschlag als Trockencluster bezeichnet werden. Dabei erkennt man im Sommer einen Trend zu mehr Trockenclustern,in Übereinstimmung mit den oben genannten Ergebnissen, in den übrigen Jahreszeiten und im Gesamtjahr jedoch einen Trend zu weniger Trockenclustern. Innerhalb des Sommers ist dieser Trend im August am stärksten, in den übrigen Jahreszeiten im März, Oktober und Dezember. Bei den Clustern von Feuchteereignissen, das heißt Tagen mit relativ viel Niederschlag, ist das Bild umgekehrt. Im Sommer nimmt deren Zahl ab, ansonsten nimmt sie zu. Die stärksten Trends sind dabei wiederum im August (Abnahme) bzw. im März, Oktober und Dezember (jeweils Zunahme) zu erkennen. Alle diese Trends werden im der Regel umso schwächer, je höher die Schranke der Niederschlagsmenge gewählt wird. Bei den Temperaturdaten sind die Trends von Frost- und Eistagen nur im November überwiegend positiv, in allen Wintermonaten (Dezember, Januar und Februar) jedoch fast ausschließlich negativ. Darin spiegelt sich somit der Trend zu höheren Temperaturen wider. Bei den Wärmeclustern ändern sich die Trends mit der Höhe der Schranke. Bei der Schranke von 25°C zeigen der Juli, insbesondere aber der August positive Trends. Bei der 30°C-Schranke bleibt der Augusttrend positiv, der Julitrend wird dagegen negativ. Bei der Schranke von 35°C werden die Augusttrends dann deutlich geringer, während die Julitrends, wenn auch schwächer ausgeprägt, negativ bleiben. Die Trends im Juni sind dagegen insgesamt schwach. Betrachtet man die Signifikanz der Trends, so sind insbesondere die Trends bei hohen Schranken weniger signifikant. Dies gilt für die hohen Niederschlagschranken (20mm, 30mm, 95%-Perzentil, 99%-Perzentil) ebenso wie für die hohen Temperaturschranken (30°C, 35°C). Weiterhin ist die Signifikanz dann niedrig, wenn die Zahl der Cluster im betrachteten Zeitraum klein ist. In Monaten und Jahreszeiten, in denen nur wenige Cluster auftreten, ist der Trend der Zahl der Cluster meist nicht signifikant. Insgesamt zeigen beim Niederschlag die untere Schranke von 1mm sowie die oberen Schranken von 10mm und 90% die signifikantesten Trends. Bei den Temperaturdaten ist das bei den Frosttagen generell, bei den Eistagen im Januar und Februar sowie bei den sommerlichen Clustern mit einer Tagesmaximumtemperatur von über 25°C der Fall (mit zum Teil über 95% bzw. 99% Signifikanz).
In dieser Studie wurden stationsbezogene Messdaten der bodennahen Lufttemperatur, des Niederschlages und des Windes in Deutschland und zum Teil auch in Mitteleuropa für den Zeitraum 1901 bzw. 1951 bis 2000 im Hinblick auf Änderungen ihres Extremverhaltens untersucht. Hierfür wurde ein bimethodischer Ansatz gewählt. Die als Methode I bezeichnete "zeitlich gleitende Extremwertanalyse" definiert für den betrachteten (gleitenden) Zeitraum feste Schwellen. An die Zeitreihen der Schwellenüber- bzw. Unterschreitungen wurden sowohl empirische, als auch theoretische Häufigkeitsverteilungen angepasst, aus denen extremwert-theoretische Größen wie Wartezeitverteilung, Wiederkehrzeit und Risiko abgeleitet wurden. Die Methode II der "strukturorientierten Zeitreihenzerlegung" sucht, basierend auf einer zugrundegelegten theoretischen Verteilung, nach zeitabhängigen Parametern der zugehörigen Wahrscheinlichkeitsdichte. Hierdurch lassen sich zeitabhängige Wahrscheinlichkeiten für das Über- bzw. Unterschreiten von Schwellen angeben. Die gleitende Analyse zeigt bei Niederschlagsmonatsdaten in ganz Deutschland für untere Schranken einen Trend zu seltenerem Auftreten von Extremereignissen. Bei oberen Schranken ist hingegen im Osten einen Trend zu seltenerem, im Westen einen Trend zu häufigerem Auftreten von Extremereignissen zu erkennen. Im Osten ergibt sich also insgesamt ein Trend zu weniger extremen Monatsniederschlagssummen, im Westen ein Trend zu höheren onatsniederschlagssummen. Bei den Niederschlagstagesdaten, bei denen nur die Untersuchung oberer Schranken sinnvoll ist, sind die Ergebnistrends denen der Niederschlagsmonatsdaten in ihrer regionalen Verteilung ähnlich. Allerdings sind die Trends hier schrankenabhängig. Insbesondere in Norddeutschland ergibt sich dabei für relativ niedrige Schranken ein Trend zu kleineren Überschreitungshäufigkeiten, für hohe Schranken hingegen ein Trend zu größeren Überschreitungshäufigkeiten. Damit ergibt sich insgesamt ein Trend zu extremeren Tagesniederschlägen. Bei den Temperaturdaten zeigen die Ergebnisse der gleitenden Analyse der Monatsdaten mit wenigen Ausnahmen ein selteneres Unterschreiten unterer Schranken (also: Kälteereignis). Dieses Verhalten ist bei den Temperaturtagesdaten sogar flächendeckend zu beobachten. Für obere Schranken (also: Hitzeereignis) ergibt sich im allgemeinen ein Trend zu häufigerem Auftreten von Extremereignissen. Allerdings ist dieser Trend nicht flächendeckend zu beobachten. Vielmehr gibt es in allen Regionen Deutschlands einzelne Stationen, bei denen ein Trend zu seltenerem Überschreiten oberer Schranken festzustellen ist. Bei der "strukturorientierten Zeitreihenzerlegung" wurden folgende Ergebnisse erzielt: Die Wahrscheinlichkeitsdichten der monatlichen und saisonalen Temperatur-Daten weisen überwiegend positive Trends im Mittelwert auf, die Streuung hat sich hier nur in Ausnahmefällen verändert. Dies führte zu teilweise deutlich gestiegenen Wahrscheinlichkeiten für besonders warme Monats- und saisonale Mittel im 20. Jh. (Ausnahme: Herbst im Datensatz 1951 bis 2000). Entsprechend sanken in diesem Zeitraum verbreitet die Wahrscheinlichkeiten für extrem kalte Monats- und saisonale Mittel. Ebenso stiegen dieWahrscheinlichkeiten für Häufigkeiten von besonders warmen Tagen (über dem 10%-Perzentil) ab 1951 in allen Jahreszeiten, besonders im Winter für die Tagesmaximum-Temperaturen. Dies korrespondiert mit einer beschleunigten Häufigkeits-Abnahme von besonders kalten Tagen in allen Jahreszeiten, besonders in Süddeutschland. Beim Niederschlag dominieren ausgeprägt jahreszeitliche Unterschiede: Im Winter findet sich sowohl ein Trend zu höheren Monats- und saisonalen Summen, als auch eine erhöhte Variabilität, was verbreitet zu einer deutlichen Zunahme von extrem hohen Niederschlagssummen in dieser Jahreszeit führt. Im Sommer hingegen wurde ein Trend zu einer verringerten Variabilität gefunden, wodurch auch extrem hohe monatliche und saisonale Niederschlagssummen in weiten Teilen Mitteleuropas in dieser Jahreszeit seltener geworden sind. Entsprechend haben Tage mit hohen (über dem 10%-Perzentil) und auch extrem hohen (über dem 5%- und 2%-Perzentil) Niederschlagssummen im Sommer verbreitet abgenommen, in den anderen Jahreszeiten (vor allem im Winter und in Westdeutschland) jedoch zugenommen. Beim Wind sind die Ergebnisse recht uneinheitlich, so dass hier eine allgemeine Charakterisierung schwer fällt. Tendenziell nehmen die Häufigkeiten extremer täglicher Windmaxima im Winter zu und im Sommer ab. Dies gilt jedoch nicht für küstennahe Stationen, wo auch im Winter oft negative Trends extremer Tagesmaxima beobachtet wurden - In Süddeutschland hingegen finden sich auch im Sommer positive Trends in den Häufigkeiten extrem starker Tagesmaxima. Jedoch sind die untersuchten Daten (Windmaxima über Beaufort 8 und mittlere monatliche Windgeschwindigkeiten) wahrscheinlich mit großen Messfehlern behaftet und zudem für die hier durchgeführten Analysen nur bedingt geeignet. Es hat sich somit gezeigt, dass das Extremverhalten von Klimaelementen, wie Temperatur und Niederschlag, im 20. Jhr. sehr starken Änderungen unterworfen war. Diese Änderungen im Extremen wiederum sind sehr stark von Änderungen des "mittleren" Zustandes dieser Klimaelemente abhängig, welcher durch statistische Charakteristika wie Mittelwert und Standardabweichung (bzw. allgemeiner Lage und Streuung) beschrieben werden kann.
Die Frage, ob das Klima extremer wird, beschäftigt Wissenschaft und Öffentlichkeit mit zunehmender Intensität. Daher ist hier eine extremwertstatistische Untersuchung hinsichtlich Niederschlag und Temperatur durchgeführt worden. Dabei werden, entsprechend IPCCEmpfehlungen, für die untersuchten Zeitreihen obere und untere Schwellenwerte festgelegt. Durch Auszählen kann dann ermittelt werden, wie oft die entsprechende Schranke über- oder unterschritten wurde (relativer Extremwert). Das Verhältnis der Anzahl der relativen Extremwerte zu den Gesamtwerten nennt man empirische Extremwerthäufigkeit. Darüber hinaus wurden Häufigkeitsverteilungen an die Datensätze angepasst, aus denen vorher der Jahresgang eliminiert wurde. Über diese Häufigkeitsverteilungen bestimmt man die theoretische Über- oder Unterschreitungswahrscheinlichkeit der jeweiligen Schranke, und vergleicht diese mit der empirischen. Diese Daten bieten auch die Möglichkeit, weitere wahrscheinlichkeitstheoretische Größen (Risiko, Wartezeitverteilung, Wiederkehrzeit) zu bestimmen. Das Verfahren wird auf 78 100-jährige Zeitreihen des Niederschlags und 10 100-jährige Zeitreihen der Temperatur in Deutschland angewendet. Dabei ist zu beachten, dass eine Übereinstimmung von empirischen und theoretischen Ergebnissen nur im statistischen Mittel zu erwarten ist. Die Untersuchungen zeigen, dass die ersten 10 bis 15 Jahre des letzten Jahrhunderts, sowohl bei den Niederschlägen als auch bei der Temperatur, nicht so extrem gewesen sind wie der Rest des Jahrhunderts. Bei den Niederschlagsdaten zeigt sich darüber hinaus um die Jahrhundertmitte ein etwa 10-jähriger Zeitraum mit hoher Niederschlagsvariabilität. Für die Abschätzung der Wahrscheinlichkeit des Überschreitens von Schranken bei Niederschlagsdaten ist die angepasste Gumbelverteilung am besten geeignet. Der Unterschied zu den anderen angepassten Verteilungen ist um so klarer, je höher die Schranke gewählt wird. Für die Abschätzung der Wahrscheinlichkeit des Unterschreitens von Schranken bei Temperaturdaten ist die angepasste Weibullverteilung am besten geeignet. Kein klares Bild ergibt sich bei den Kombinationen untere Schranke und Niederschlagsdaten sowie obere Schranke und Temperaturdaten. Die Abschätzung der Eintrittswahrscheinlichkeit und damit verbunden die Bestimmung der Wiederkehrzeit und des Risikos ist in allen Fällen um so besser, je geringer der Jahresgang der Variabilität der untersuchten Größe ist. Beim Trend der Wiederkehrzeit zeigt sich bei den Niederschlagsdaten und der unteren Schranke im äußersten Westen Deutschlands ein Rückgang trockener Ereignisse. Ansonsten erkennt man nur schwache Änderungen. Für obere Schranken zeigt sich im Westen Deutschlands ein Rückgang der Wiederkehrzeit, also ein Trend zu häufigeren extremen Niederschlägen, mit einem Maximum im östlichen Nordrhein-Westfalen. Im Osten dagegen ermittelt man einen Rückgang extremer Niederschläge und damit einen Trend zu trockenerer Witterung, am stärksten ausgeprägt im westlichen Erzgebirge. Für die Temperaturdaten zeigt sich in fast ganz Deutschland für untere Schranken ein Anstieg der Wiederkehrzeit. Extrem niedrige Temperaturen treten also tendenziell seltener auf. Die Ausnahme bilden hier nur, je nach zugrunde liegender Verteilung, der (äußerste) Norden und Osten Deutschlands. Die gleiche geographische Unterteilung, jedoch mit umgekehrtem Trend, zeigt sich bei den oberen Schranken. Extrem warme Ereignisse treten, mit Ausnahme des Nordostens, tendenziell häufiger auf. Die stärkste Zunahme im Trend der warmen Ereignisse zeigt sich dabei im Südwesten Deutschlands.
Background: Interferon and ribavirin therapy for chronic hepatitis C virus (HCV) infection yields sustained virological response (SVR) rates of 50–80%. Several factors such as non-1 genotype, beneficial IL28B genetic variants, low baseline IP-10, and the functionality of HCV-specific T cells predict SVR. With the pending introduction of new therapies for HCV entailing very rapid clearance of plasma HCV RNA, the importance of baseline biomarkers likely will increase in order to tailor therapy. CD26 (DPPIV) truncates the chemokine IP-10 into a shorter antagonistic form, and this truncation of IP-10 has been suggested to influence treatment outcome in patients with chronic HCV infection patients. In addition, previous reports have shown CD26 to be a co-stimulator for T cells. The aim of the present study was to assess the utility of CD26 as a biomarker for treatment outcome in chronic hepatitis C and to define its association with HCV-specific T cells.
Methods: Baseline plasma from 153 genotype 1 and 58 genotype 2/3 infected patients enrolled in an international multicenter phase III trial (DITTO-HCV) and 36 genotype 1 infected patients participating in a Swedish trial (TTG1) were evaluated regarding baseline soluble CD26 (sCD26) and the functionality of HCV-specific CD8+ T cells.
Results: Genotype 1 infected patients achieving SVR in the DITTO (P = 0.002) and the TTG1 (P = 0.02) studies had lower pretreatment sCD26 concentrations compared with non-SVR patients. Sixty-five percent of patients with sCD26 concentrations below 600 ng/mL achieved SVR compared with 39% of the patients with sCD26 exceeding 600 ng/mL (P = 0.01). Patients with sCD26 concentrations below 600 ng/mL had significantly higher frequencies of HCV-specific CD8+ T cells (P = 0.02).
Conclusions: Low baseline systemic concentrations of sCD26 predict favorable treatment outcome in chronic HCV infection and may be associated with higher blood counts of HCV-specific CD8+ T cells.
Mosquitoes and other arthropods may transmit medically important pathogens, in particular viruses such as West Nile virus. The presence of suitable hosts and competent vectors for those zoonotic viruses is essential for an enzootic transmission, which is a prerequisite for epidemics. To establish reliable risk projections, it is an urgent need for an exact identification of mosquito species, which is especially challenging in the case of sibling species, such as Culex. pipiens pipiens biotypes pipiens and molestus. To facilitate detection of different Culex pipiens forms and their hybrids we established a multiplex real-time PCR. Culex pipiens samples were obtained by egg raft collection and rearing until imago stage or adult sampling using CO2 baited traps and gravid traps. In total, we tested more than 16,500 samples collected all over Germany in the years 2011 and 2012. The predominant species in Germany are Culex pipiens pipiens biotype pipiens and Culex. torrentium, but we also detected Culex pipiens pipiens biotype molestus and hybrids of the two pipiens biotypes at sites where both species occur sympatrically. This report of a potentially important bridge vector for West Nile virus might have major impact in the risk projections for West Nile virus in Germany.
Small-scale phenotypic differentiation along complex stream gradients in a non-native amphipod
(2019)
Background: Selective landscapes in rivers are made up by an array of selective forces that vary from source to downstream regions or between seasons, and local/temporal variation in fitness maxima can result in gradual spatio-temporal variation of phenotypic traits. This study aimed at establishing freshwater amphipods as future model organisms to study adaptive phenotypic diversification (evolutionary divergence and/or adaptive plasticity) along stream gradients.
Methods: We collected Gammarus roeselii from 16 sampling sites in the Rhine catchment during two consecutive seasons (summer and winter). Altogether, we dissected n = 1648 individuals and quantified key parameters related to morphological and life-history diversification, including naturally selected (e.g., gill surface areas) as well as primarily sexually selected traits (e.g., male antennae). Acknowledging the complexity of selective regimes in streams and the interrelated nature of selection factors, we assessed several abiotic (e.g., temperature, flow velocity) and biotic ecological parameters (e.g., conspecific densities, sex ratios) and condensed them into four principal components (PCs).
Results: Generalized least squares models revealed pronounced phenotypic differentiation in most of the traits investigated herein, and components of the stream gradient (PCs) explained parts of the observed differences. Depending on the trait under investigation, phenotypic differentiation could be ascribed to variation in abiotic conditions, anthropogenic disturbance (influx of thermally polluted water), or population parameters. For example, female fecundity showed altitudinal variation and decreased with increasing conspecific densities, while sexual dimorphism in the length of male antennae—used for mate finding and assessment—increased with increasing population densities and towards female-biased sex ratios.
Conclusions: We provide a comprehensive protocol for comparative analyses of intraspecific variation in life history traits in amphipods. Whether the observed phenotypic differentiation over small geographical distances reflects evolutionary divergence or plasticity (or both) remains to be investigated in future studies. Independent of the mechanisms involved, variation in several traits is likely to have consequences for ecosystem functions. For example, leaf-shredding in G. roeselii strongly depends on body size, which varied in dependence of several ecological parameters.
Pathologic data indicate that human cytomegalovirus (HCMV) infection might be associated with the pathogenesis of several human malignancies. However, no definitive evidence of a causal link between HCMV infection and cancer dissemination has been established to date. This study describes the modulation of the invasive behavior of NCAM-expressing tumor cell lines by HCMV. Neuroblastoma (NB) cells, persistently infected with the HCMV strain AD169 (UKF-NB-4AD169 and MHH-NB-11AD169), were added to endothelial cell monolayers and adhesion and penetration kinetics were measured. The 140- and 180-kDa isoforms of the adhesion receptor NCAM were evaluated by flow cytometry, Western blot, and reverse transcriptionpolymerase chain reaction (RT-PCR). The relevance of NCAM for tumor cell binding was proven by treating NB with NCAM antisense oligonucleotides or NCAM transfection. HCMV infection profoundly increased the number of adherent and penetrated NB, compared to controls. Surface expression of NCAM was significantly lower on UKF-NB-4AD169 and MHH-NB-11AD169, compared to mock-infected cells. Western-blot and RT-PCR demonstrated reduced protein and RNA levels of the 140- and 180-kDa isoform. An inverse correlation between NCAM expression and adhesion capacity of NB has been shown by antisense and transfection experiments. We conclude that HCMV infection leads to downregulation of NCAM receptors, which is associated with enhanced tumor cell invasiveness.
Chirality is omnipresent in living nature. On the single molecule level, the response of a chiral species to a chiral probe depends on their respective handedness. A prominent example is the difference in the interaction of a chiral molecule with left or right circularly polarized light. In the present study, we show by Coulomb explosion imaging that circularly polarized light can also induce a chiral fragmentation of a planar and thus achiral molecule. The observed enantiomer strongly depends on the orientation of the molecule with respect to the light propagation direction and the helicity of the ionizing light. This finding might trigger new approaches to improve laser-driven enantioselective chemical synthesis.
Since its founding in 1993 the International Long-term Ecological Research Network (ILTER) has gone through pronounced development phases. The current network comprises 44 active member LTER networks representing 700 LTER Sites and ~ 80 LTSER Platforms across all continents, active in the fields of ecosystem, critical zone and socio-ecological research. The critical challenges and most important achievements of the initial phase have now become state-of-the-art in networking for excellent science. At the same time increasing integration, accelerating technology, networking of resources and a strong pull for more socially relevant scientific information have been modifying the mission and goals of ILTER. This article provides a critical review of ILTER's mission, goals, development and impacts. Major characteristics, tools, services, partnerships and selected examples of relative strengths relevant for advancing ILTER are presented. We elaborate on the tradeoffs between the needs of the scientific community and stakeholder expectations. The embedding of ILTER in an increasingly collaborative landscape of global environmental observation and ecological research networks and infrastructures is also reflected by developments of pioneering regional and national LTER networks such as SAEON in South Africa, CERN/CEOBEX in China, TERN in Australia or eLTER RI in Europe. The primary role of ILTER is currently seen as a mechanism to investigate ecosystem structure, function, and services in response to a wide range of environmental forcings using long-term, place-based research. We suggest four main fields of activities and advancements for the next decade through development/delivery of a: (1) Global multi-disciplinary community of researchers and research institutes; (2) Strategic global framework and strong partnerships in ecosystem observation and research; (3) Global Research Infrastructure (GRI); and (4) a scientific knowledge factory for societally relevant information on sustainable use of natural resources.
Chatbots become human(like): the influence of gender on cooperative interactions with chatbots
(2019)
CURRENT TECHNOLOGICAL ADVANCEMENTS OF CONVERSATIONAL AGENTS (CAs) PROMISE NEW POTENTIALS FOR HUMAN-COMPUTER COLLABORATIONS. YET, BOTH PRACTITIONERS AND RESEARCHERS FACE CHALLENGES IN DESIGNING THESE INFORMATION SYSTEMS, SUCH THAT CAs NOT ONLY INCREASE IN INTELLIGENCE BUT ALSO IN EFFECTIVENESS. THROUGH OUR RESEARCH ENDEAVOUR, WE PROVIDE NEW AND COUNTERINTUITIVE INSIGHTS THAT ARE CRUCIAL FOR THE EFFECTIVE DESIGN OF COOPERATIVE CAs.
The genome, antigens of human cytomegalovirus (HCMV) are frequently found in prostatic carcinoma. However, whether this infection is causative or is an epiphenomenon is not clear. We therefore investigated the ability of HCMV to promote metastatic processes, defined by tumor cell adhesion to the endothelium, extracellular matrix proteins. Experiments were based on the human prostate tumor cell line PC3, either infected with the HCMV strain Hi (HCMVHi) or transfected with cDNA encoding the HCMV-specific immediate early protein IEA1 (UL123) or IEA2 (UL122). HCMVHi upregulated PC3 adhesion to the endothelium, to the extracellular matrix proteins collagen, laminin, fibronectin. The process was accompanied by enhancement of β1-integrin surface expression, elevated levels of integrin-linked kinase, phosphorylation of focal adhesion kinase. IEA1 or IEA2 did not modulate PC3 adhesion or β1-integrin expression. Based on this in vitro model, we postulate a direct association between HCMV infection, prostate tumor transmigration, which is not dependent on IEA proteins. Integrin overexpression, combined with the modulation of integrin-dependent signalling, seems to be, at least in part, responsible for a more invasive PC3Hi tumor cell phenotype. Elevated levels of c-myc found in IEA1-transfected or IEA2-transfected PC3 cell populations might promote further carcinogenic processes through accelerated cell proliferation.
A recent global meta‐analysis reported a decrease in terrestrial but increase in freshwater insect abundance and biomass (van Klink et al., Science 368, p. 417). The authors suggested that water quality has been improving, thereby challenging recent reports documenting drastic global declines in freshwater biodiversity. We raise two major concerns with the meta‐analysis and suggest that these account for the discrepancy with the declines reported elsewhere. First, total abundance and biomass alone are poor indicators of the status of freshwater insect assemblages, and the observed differences may well have been driven by the replacement of sensitive species with tolerant ones. Second, many of the datasets poorly represent global trends and reflect responses to local conditions or nonrandom site selection. We conclude that the results of the meta‐analysis should not be considered indicative of an overall improvement in the condition of freshwater ecosystems.
Background: Replicate population pairs that diverge in response to similar selective regimes allow for an investigation of (a) whether phenotypic traits diverge in a similar and predictable fashion, (b) whether there is gradual variation in phenotypic divergence reflecting variation in the strength of natural selection among populations, (c) whether the extent of this divergence is correlated between multiple character suites (i.e., concerted evolution), and (d) whether gradual variation in phenotypic divergence predicts the degree of reproductive isolation, pointing towards a role for adaptation as a driver of (ecological) speciation. Here, we use poeciliid fishes of the genera Gambusia and Poecilia that have repeatedly evolved extremophile lineages able to tolerate high and sustained levels of toxic hydrogen sulfide (H2S) to answer these questions.
Results: We investigated evolutionary divergence in response to H2S in Gambusia spp. (and to a lesser extent Poecilia spp.) using a multivariate approach considering the interplay of life history, body shape, and population genetics (nuclear miscrosatellites to infer population genetic differentiation as a proxy for reproductive isolation). We uncovered both shared and unique patterns of evolution: most extremophile Gambusia predictably evolved larger heads and offspring size, matching a priori predictions for adaptation to sulfidic waters, while variation in adult life histories was idiosyncratic. When investigating patterns for both genera (Gambusia and Poecilia), we found that divergence in offspring-related life histories and body shape were positively correlated across populations, but evidence for individual-level associations between the two character suites was limited, suggesting that genetic linkage, developmental interdependencies, or pleiotropic effects do not explain patterns of concerted evolution. We further found that phenotypic divergence was positively correlated with both environmental H2S-concentration and neutral genetic differentiation (a proxy for gene flow).
Conclusions: Our results suggest that higher toxicity exerts stronger selection, and that divergent selection appears to constrain gene flow, supporting a scenario of ecological speciation. Nonetheless, progress toward ecological speciation was variable, partially reflecting variation in the strength of divergent selection, highlighting the complexity of selective regimes even in natural systems that are seemingly governed by a single, strong selective agent.
Divergent selection between ecologically dissimilar habitats promotes local adaptation, which can lead to reproductive isolation (RI). Populations in the Poecilia mexicana species complex have independently adapted to toxic hydrogen sulfide and show varying degrees of RI. Here, we examined the variation in the mate choice component of prezygotic RI. Mate choice tests across drainages (with stimulus males from another drainage) suggest that specific features of the males coupled with a general female preference for yellow color patterns explain the observed variation. Analyses of male body coloration identified the intensity of yellow fin coloration as a strong candidate to explain this pattern, and common-garden rearing suggested heritable population differences. Male sexual ornamentation apparently evolved differently across sulfide-adapted populations, for example because of differences in natural counterselection via predation. The ubiquitous preference for yellow color ornaments in poeciliid females likely undermines the emergence of strong RI, as female discrimination in favor of own males becomes weaker when yellow fin coloration in the respective sulfide ecotype increases. Our study illustrates the complexity of the (partly non-parallel) pathways to divergence among replicated ecological gradients. We suggest that future work should identify the genomic loci involved in the pattern reported here, making use of the increasing genomic and transcriptomic datasets available for our study system.
Background: One aspect of premating isolation between diverging, locally-adapted population pairs is female mate choice for resident over alien male phenotypes. Mating preferences often show considerable individual variation, and whether or not certain individuals are more likely to contribute to population interbreeding remains to be studied. In the Poecilia mexicana-species complex different ecotypes have adapted to hydrogen sulfide (H2S)-toxic springs, and females from adjacent non-sulfidic habitats prefer resident over sulfide-adapted males. We asked if consistent individual differences in behavioral tendencies (animal personality) predict the strength and direction of the mate choice component of premating isolation in this system.
Results: We characterized focal females for their personality and found behavioral measures of ‘novel object exploration’, ‘boldness’ and ‘activity in an unknown area’ to be highly repeatable. Furthermore, the interaction term between our measures of exploration and boldness affected focal females’ strength of preference (SOP) for the resident male phenotype in dichotomous association preference tests. High exploration tendencies were coupled with stronger SOPs for resident over alien mating partners in bold, but not shy, females. Shy and/or little explorative females had an increased likelihood of preferring the non-resident phenotype and thus, are more likely to contribute to rare population hybridization. When we offered large vs. small conspecific stimulus males instead, less explorative females showed stronger preferences for large male body size. However, this effect disappeared when the size difference between the stimulus males was small.
Conclusions: Our results suggest that personality affects female mate choice in a very nuanced fashion. Hence, population differences in the distribution of personality types could be facilitating or impeding reproductive isolation between diverging populations depending on the study system and the male trait(s) upon which females base their mating decisions, respectively.
Autism spectrum disorders (ASD) are a heterogeneous group of neurodevelopmental disorders with a complex inheritance pattern. While many rare variants in synaptic proteins have been identified in patients with ASD, little is known about their effects at the synapse and their interactions with other genetic variations. Here, following the discovery of two de novo SHANK2 deletions by the Autism Genome Project, we identified a novel 421 kb de novo SHANK2 deletion in a patient with autism. We then sequenced SHANK2 in 455 patients with ASD and 431 controls and integrated these results with those reported by Berkel et al. 2010 (n = 396 patients and n = 659 controls). We observed a significant enrichment of variants affecting conserved amino acids in 29 of 851 (3.4%) patients and in 16 of 1,090 (1.5%) controls (P = 0.004, OR = 2.37, 95% CI = 1.23-4.70). In neuronal cell cultures, the variants identified in patients were associated with a reduced synaptic density at dendrites compared to the variants only detected in controls (P = 0.0013). Interestingly, the three patients with de novo SHANK2 deletions also carried inherited CNVs at 15q11-q13 previously associated with neuropsychiatric disorders. In two cases, the nicotinic receptor CHRNA7 was duplicated and in one case the synaptic translation repressor CYFIP1 was deleted. These results strengthen the role of synaptic gene dysfunction in ASD but also highlight the presence of putative modifier genes, which is in keeping with the "multiple hit model" for ASD. A better knowledge of these genetic interactions will be necessary to understand the complex inheritance pattern of ASD.
In bacteria, the regulation of gene expression by cis-acting transcriptional riboswitches located in the 5'-untranslated regions of messenger RNA requires the temporal synchronization of RNA synthesis and ligand binding-dependent conformational refolding. Ligand binding to the aptamer domain of the riboswitch induces premature termination of the mRNA synthesis of ligand-associated genes due to the coupled formation of 3'-structural elements acting as terminators. To date, there has been no high resolution structural description of the concerted process of synthesis and ligand-induced restructuring of the regulatory RNA element. Here, we show that for the guanine-sensing xpt-pbuX riboswitch from Bacillus subtilis, the conformation of the full-length transcripts is static: it exclusively populates the functional off-state but cannot switch to the on-state, regardless of the presence or absence of ligand. We show that only the combined matching of transcription rates and ligand binding enables transcription intermediates to undergo ligand-dependent conformational refolding.
The Cueva del Azufre in Tabasco, Mexico, is a nutrient-rich cave and its inhabitants need to cope with high levels of dissolved hydrogen sulfide and extreme hypoxia. One of the successful colonizers of this cave is the poeciliid fish Poecilia mexicana, which has received considerable attention as a model organism to examine evolutionary adaptations to extreme environmental conditions. Nonetheless, basic ecological data on the endemic cave molly population are still missing; here we aim to provide data on population densities, size class compositions and use of different microhabitats. We found high overall densities in the cave and highest densities at the middle part of the cave with more than 200 individuals per square meter. These sites have lower H2S concentrations compared to the inner parts where most large sulfide sources are located, but they are annually exposed to a religious harvesting ceremony of local Zoque people called La Pesca. We found a marked shift in size/age compositions towards an overabundance of smaller, juvenile fish at those sites. We discuss these findings in relation to several environmental gradients within the cave (i.e., differences in toxicity and lighting conditions), but we also tentatively argue that the annual fish harvest during a religious ceremony (La Pesca) locally diminishes competition (and possibly, cannibalism by large adults), which is followed by a phase of overcompensation of fish densities.
Tiotropium as an add-on treatment option for severe uncontrolled asthma in preschool patients
(2021)
Background: Toddlers with asthma suffer disproportionally more than school-aged children from exacerbations with emergency visits and hospital admissions despite inhaled corticosteroid (ICS) treatment. A recent trial for children ≤ 5 years showed tolerability of tiotropium and potential to reduce asthma-related events.
Methods: We conducted a retrospective analysis of electronic outpatient records (2017‒2019) of children < 6 years treated with ICS plus long-acting β2-agonists (LABAs) plus tiotropium as an add-on for uncontrolled severe asthma. The primary endpoint was a comparison of systemic corticosteroid (SCS) prescriptions 6 months before and after ICS/LABA/tiotropium start. Secondary endpoints included physician visits, hospitalisations and antibiotic prescriptions. We compared outcomes with children without asthma matched for age, sex, season and screening date.
Results: Compared with a mean 2.42 (95% CI: 1.75, 3.36) SCS courses per patient within 6 months prior to ICS/LABA/tiotropium, 0.74 (95% CI: 0.25, 1.08) SCS courses per patient were prescribed within 6 months after starting ICS/LABA/tiotropium (P< 0.001). Physician visits dropped from 9.23 (95% CI: 7.15, 12.72) to 5.76 (95% CI: 3.10, 7.70) per patient (P< 0.01). Nineteen hospitalisations were recorded 6 months before ICS/LABA/tiotropium compared with one hospitalisation after (P< 0.01). A mean 1.79 antibiotic courses (95% CI: 1.22, 2.23) per patient were prescribed before ICS/LABA/tiotropium compared with 0.74 (95% CI: 0.22, 1.00) after ICS/LABA/tiotropium (P< 0.001). Hospitalisation rates for patients at observation end were not statistically different from healthy controls before/after matching.
Interpretation: Our retrospective study showed that adding tiotropium to ICS/LABA is a new treatment option for patients with severe preschool asthma; however, larger confirmatory studies are needed.
Rationale: Postinfectious bronchiolitis obliterans (PIBO) is a rare, chronic respiratory condition, which follows an acute insult due to a severe infection of the lower airways. Objectives: The objective of this study was to investigate the long-term course of bronchial inflammation and pulmonary function testing in children with PIBO. Methods: Medical charts of 21 children with PIBO were analyzed retrospectively at the Children's University Hospital Frankfurt/Main Germany. Pulmonary function tests (PFTs) with an interval of at least 1 month were studied between 2002 and 2019. A total of 382 PFTs were analyzed retrospectively and per year, the two best PFTs, in total 217, were evaluated. Additionally, 56 sputum analysis were assessed and the sputum neutrophils were evaluated. Results: The evaluation of the 217 PFTs showed a decrease in FEV1 with a loss of 1.07% and a loss in z score of −0.075 per year. FEV1/FVC decreased by 1.44 per year. FVC remained stable, showing a nonsignificant increase by 0.006 in z score per year. However, FEV1 and FVC in L increased significantly with FEV1 0.032 L per cm and FVC 0.048 L/cm in height. Sputum neutrophils showed a significant increase of 2.12% per year. Conclusion: Our results demonstrated that in patients with PIBO pulmonary function decreased significantly showing persistent obstruction over an average follow-up period of 8 years. However, persistent lung growth was revealed. In addition, pulmonary inflammation persisted clearly showing an increasing amount of neutrophils in induced sputum. Patients did not present with a general susceptibility to respiratory infections.
Background Drug resistance to chemotherapy is often associated with increased malignancy in neuroblastoma (NB). One explanation for the link between resistance and malignancy might be that resistance facilitates cancer progression and invasion. To investigate this hypothesis, adhesion, transendothelial penetration and NCAM (CD56) adhesion receptor expression of drug-resistant versus drug-sensitive NB tumor cells were evaluated. Methods Acquired drug resistance was mimicked by exposing parental UKF-NB-2, UKF-NB-3 or IMR-32 tumor cells to increasing concentrations of vincristine- (VCR) or doxorubicin (DOX) to establish the resistant tumor cell sublines UKF-NB-2VCR, UKF-NB-2DOX, UKF-NB-3VCR, UKF-NB-3DOX, IMR-32VCR and IMR-32DOX. Additionally, the malignant behaviour of UKF-NB-4, which already possessed the intrinsic multidrug resistance (MDR) phenotype, was analyzed. UKF-NB-4 exposed to VCR or DOX were designated UKF-NB-4VCR or UKF-NB-4DOX. Combined phase contrast - reflection interference contrast microscopy was used to separately evaluate NB cell adhesion and penetration. NCAM was analyzed by flow cytometry, western blot and RT-PCR. Results VCR and DOX resistant tumor sublines showed enhanced adhesion and penetration capacity, compared to their drug naive controls. Strongest effects were seen with UKF-NB-2VCR, UKF-NB-3VCR and IMR-32DOX. DOX or VCR treatment also evoked increased invasive behaviour of UKF-NB-4. The process of accelerated tumor invasion was accompanied by decreased NCAM surface and protein expression, and down-regulation of NCAM coding mRNA. Transfection of UKF-NB-4VCR cells with NCAM cDNA led to a significant receptor up-regulation, paralleled by diminished adhesion to an endothelial cell monolayer. Conclusions It is concluded that NB cells resistant to anticancer drugs acquire increased invasive capacity relative to non-resistant parental cells, and that enhanced invasion is caused by strong down-regulation of NCAM adhesion receptors.
Purpose: A study of real-time adaptive radiotherapy systems was performed to test the hypothesis that, across delivery systems and institutions, the dosimetric accuracy is improved with adaptive treatments over non-adaptive radiotherapy in the presence of patient-measured tumor motion.
Methods and materials: Ten institutions with robotic(2), gimbaled(2), MLC(4) or couch tracking(2) used common materials including CT and structure sets, motion traces and planning protocols to create a lung and a prostate plan. For each motion trace, the plan was delivered twice to a moving dosimeter; with and without real-time adaptation. Each measurement was compared to a static measurement and the percentage of failed points for γ-tests recorded.
Results: For all lung traces all measurement sets show improved dose accuracy with a mean 2%/2 mm γ-fail rate of 1.6% with adaptation and 15.2% without adaptation (p < 0.001). For all prostate the mean 2%/2 mm γ-fail rate was 1.4% with adaptation and 17.3% without adaptation (p < 0.001). The difference between the four systems was small with an average 2%/2 mm γ-fail rate of <3% for all systems with adaptation for lung and prostate.
Conclusions: The investigated systems all accounted for realistic tumor motion accurately and performed to a similar high standard, with real-time adaptation significantly outperforming non-adaptive delivery methods.
One like all? Behavioral response range of native and invasive amphipods to neonicotinoid exposure
(2024)
Highlights
• Short-time neonicotinoid exposure causes behavioral responses in non-target species.
• Environmentally relevant concentrations can induce changes in invertebrate behavior.
• Different baseline activity of ecological similar crustacean amphipods.
• Species respond specifically to thiacloprid exposure.
• Acantocephalan infection affects locomotion of intermediate host Gammarus roeselii.
Abstract
Native and invasive species often occupy similar ecological niches and environments where they face comparable risks from chemical exposure. Sometimes, invasive species are phylogenetically related to native species, e.g. they may come from the same family and have potentially similar sensitivities to environmental stressors due to phylogenetic conservatism and ecological similarity. However, empirical studies that aim to understand the nuanced impacts of chemicals on the full range of closely related species are rare, yet they would help to comprehend patterns of current biodiversity loss and species turnover. Behavioral sublethal endpoints are of increasing ecotoxicological interest. Therefore, we investigated behavioral responses (i.e., change in movement behavior) of the four dominant amphipod species in the Rhine-Main area (central Germany) when exposed to the neonicotinoid thiacloprid. Moreover, beyond species-specific behavioral responses, ecological interactions (e.g. parasitation with Acanthocephala) play a crucial role in shaping behavior, and we have considered these infections in our analysis. Our findings revealed distinct baseline behaviors and species-specific responses to thiacloprid exposure. Notably, Gammarus fossarum exhibited biphasic behavioral changes with hyperactivity at low concentrations that decreased at higher concentrations. Whereas Gammarus pulex, Gammarus roeselii and the invasive species Dikerogammarus villosus, showed no or weaker behavioral responses. This may partly explain why G. fossarum disappears in chemically polluted regions while the other species persist there to a certain degree. But it also shows that potential pre-exposure in the habitat may influence behavioral responses of the other amphipod species, because habituation occurs, and potential hyperactivity would be harmful to individuals in the habitat. The observed responses were further influenced by acanthocephalan parasites, which altered baseline behavior in G. roeselii and enhanced the behavioral response to thiacloprid exposure. Our results underscore the intricate and diverse nature of responses among closely related amphipod species, highlighting their unique vulnerabilities in anthropogenically impacted freshwater ecosystems.