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A catalogue of 107 species of liverworts (Marchantiophyta) and 8 species of hornworts (Anthocerotophyta), recorded from Assam, India is presented. This includes three new records for India viz., Cololejeunea denticulata (Horik.) S. Hatt., C. inflata Steph., Plagiochila furcifolia Mitt., and three species viz., Cololejeunea desciscens Steph. Colura ari (Steph.) Steph., Lopholejeunea eulopha (Taylor) Schiffn. new to mainland. Twelve species are new record for Eastern Himalayan bryo-geographical territory, 20 species as new to Assam and seven species are endemic to Indian regions.
This paper presents the first comprehensive list of 2,688 species of Staphylinidae (Coleoptera) recorded from Brazil. The list is based on the taxonomic and ecological literature, and new records from some insect collections, and includes locality references for each species. In addition, Brazilian localities and the country-level distribution outside of Brazil are provided for each species. Brazilian localities are organized by state, and include the bibliographic reference and page number where each locality was reported. All localities are geo-referenced, organized by state, and listed in an Appendix.
Translation is an important step in gene expression. The initiation of translation is phylogenetically diverse, since currently five different initiation mechanisms are known. For bacteria the three initiation factors IF1 – IF3 are described in contrast to archaea and eukaryotes, which contain a considerably higher number of initiation factor genes. As eukaryotes and archaea use a non-overlapping set of initiation mechanisms, orthologous proteins of both domains do not necessarily fulfill the same function. The genome of Haloferax volcanii contains 14 annotated genes that encode (subunits of) initiation factors. To gain a comprehensive overview of the importance of these genes, it was attempted to construct single gene deletion mutants of all genes. In 9 cases single deletion mutants were successfully constructed, showing that the respective genes are not essential. In contrast, the genes encoding initiation factors aIF1, aIF2γ, aIF5A, aIF5B, and aIF6 were found to be essential. Factors aIF1A and aIF2β are encoded by two orthologous genes in H. volcanii. Attempts to generate double mutants failed in both cases, indicating that also these factors are essential. A translatome analysis of one of the single aIF2β deletion mutants revealed that the translational efficiency of the second ortholog was enhanced tenfold and thus the two proteins can replace one another. The phenotypes of the single deletion mutants also revealed that the two aIF1As and aIF2βs have redundant but not identical functions. Remarkably, the gene encoding aIF2α, a subunit of aIF2 involved in initiator tRNA binding, could be deleted. However, the mutant had a severe growth defect under all tested conditions. Conditional depletion mutants were generated for the five essential genes. The phenotypes of deletion mutants and conditional depletion mutants were compared to that of the wild-type under various conditions, and growth characteristics are discussed.
A comprehensive checklist and host plants of Aphididae (Aphidomorpha: Hemiptera) from Pakistan
(2024)
The family Aphididae (Hemiptera) represents one of the most diverse groups of sap-sucking insect pests referred to as aphids or plant-lice, with 366 species reported in Pakistan, associated with wide array of agricultural and horticultural crops, including fruit and forest trees, weeds, grasses, shrubs, and vines. This work aims to provide an updated checklist of aphids and their associated host plants documented across various regions of Pakistan. The checklist consolidates information from various published literature sources, including annotated checklists, regional distribution data, and host plant records from Pakistan. In this study, we present an annotated checklist of 366 aphid species, belonging to 134 genera and 11 subfamilies, associated with a total of 359 host plant species stretched over 84 families in Pakistan.
Background: Alterations in the DNA methylation pattern are a hallmark of leukemias and lymphomas. However, most epigenetic studies in hematologic neoplasms (HNs) have focused either on the analysis of few candidate genes or many genes and few HN entities, and comprehensive studies are required. Methodology/Principal Findings: Here, we report for the first time a microarray-based DNA methylation study of 767 genes in 367 HNs diagnosed with 16 of the most representative B-cell (n = 203), T-cell (n = 30), and myeloid (n = 134) neoplasias, as well as 37 samples from different cell types of the hematopoietic system. Using appropriate controls of B-, T-, or myeloid cellular origin, we identified a total of 220 genes hypermethylated in at least one HN entity. In general, promoter hypermethylation was more frequent in lymphoid malignancies than in myeloid malignancies, being germinal center mature B-cell lymphomas as well as B and T precursor lymphoid neoplasias those entities with highest frequency of gene-associated DNA hypermethylation. We also observed a significant correlation between the number of hypermethylated and hypomethylated genes in several mature B-cell neoplasias, but not in precursor B- and T-cell leukemias. Most of the genes becoming hypermethylated contained promoters with high CpG content, and a significant fraction of them are targets of the polycomb repressor complex. Interestingly, T-cell prolymphocytic leukemias show low levels of DNA hypermethylation and a comparatively large number of hypomethylated genes, many of them showing an increased gene expression. Conclusions/Significance: We have characterized the DNA methylation profile of a wide range of different HNs entities. As well as identifying genes showing aberrant DNA methylation in certain HN subtypes, we also detected six genes—DBC1, DIO3, FZD9, HS3ST2, MOS, and MYOD1—that were significantly hypermethylated in B-cell, T-cell, and myeloid malignancies. These might therefore play an important role in the development of different HNs.
The number of invasive alien species is increasing and so are the impacts these species cause to the environment and economies. Nevertheless, resources for management are limited, which makes prioritization unavoidable. We present a prioritization framework which can be useful for decision makers as it includes both a scientific impact assessment and the evaluation of impact importance by affected stakeholders. The framework is divided into five steps, namely 1) stakeholder selection and weighting of stakeholder importance by the decision maker, 2) factual description and scoring of changes by scientists, 3) evaluation of the importance of impact categories by stakeholders, 4) calculation of weighted impact categories and 5) calculation of final impact score and decision making. The framework could be used at different scales and by different authorities. Furthermore, it would make the decision making process transparent and retraceable for all stakeholders and the general public.
The riparian rainforest on the streamside levees of the coastal floodplain of the Clarence River on the North Coast of New South Wales was cleared during the 1860s by small landholders seeking fertile land. Only three small remnants remain. Using a combination of historical species lists, corner trees from surveyors’ portion plans, habitat information and the NSW Scientific Committee’s (1999) determination for lowland rainforest on floodplain a conceptual model of the original distribution of rainforest suballiances on the levees of the Clarence River coastal floodplain is proposed.
Past concepts and synonymies of Anadenobolus monilicornis (Porat, 1876) (Spirobolida: Rhinocricidae), including the implied synonymy of Rhinocricus ectus Chamberlin, 1920, are consolidated into a formal account with the fi rst illustrations of the holotype. Prior to 1492, A. monilicornis was probably indigenous to an unknown number of southern Antillean islands, but through modern commerce, man has introduced it to Florida, Bermuda, Barbados, the Cayman Islands, and Jamaica, and probably repeatedly (re)introduced conspecifi c material to all the Lesser Antilles, resulting in subcontinuous gene pool mixing and reticulate evolution. A broad species concept is necessary to encompass the multitudinous variants, some of which have been recognized as species; only one true Caribbean species of Anadenobolus Silvestri, 1897, may exist, for which arboreus (Saussure, 1859) is the oldest name. The distribution of A. monilicornis presently extends from Bermuda and southern coastal Florida through the Greater and Lesser Antilles (excepting Cuba) to eastern coastal Venezuela and central Suriname, with outlier populations in Jamaica, the Cayman Islands, and Tampa Bay and the eastern Floridian panhandle; excepting Barbados, the indigenous range may have extended from Hispaniola through the same area. Introductions into Manitoba, Canada, and North Carolina, USA, have not yielded viable populations. Localities are newly recorded from St. Thomas, US Virgin Islands.
Tiphallus torreon n. sp., the fi rst rhachodesmid milliped from Coahuila, Mexico, displays an iridescent turquoise pigmentation with patterned white paranotal markings and a truncated, subapical projection from the broad, non-descript gonopodal acropodite. Four genera – Strongylodesmus Saussure, Mexidesmus Loomis, and Ceuthauxus and Tiphallus, both by Chamberlin – contain forms exhibiting this general condition, but the last is the only one whose type species does. Synthetic treatments are essential to advance familial knowledge beyond the descriptive stage, and revising these four taxa would constitute a meaningful initial study. Rhachodesmidae extend from northern Nuevo León, Mexico, ca. 77 km (48 mi) from the Rio Grande, to central Costa Rica; Glomeridae (Glomerida), Platydesmidae (Platydesmida), and Stemmiulidae (Stemmiulida) show similar distributions whereas Allopocockiidae (Spirobolida) and Rhysodesmus Cook (Polydesmida: Xystodesmidae) traverse the river and occupy southernmost Texas. Tridontomidae, the other component of Rhachodesmoidea, occupies a small enclave in Alta Verapaz, Guatemala. Rhachodesmidae/oidea do not occur in Panama and are initially recorded from Belize; localities are needed from Honduras.
Mimuloria Chamberlin 1928 is revived from synonymy under Nannaria Chamberlin 1918a for Nannariini (Polydesmida: Xystodesmidae) with simple but apically ornamented gonopodal acropodites that arch or lean mediad and cross body midlines and opposing acropodites in situ. It encompasses two assemblages based primarily on the nature of the ornamentations, the castanea and dilatata species groups. The former includes three established species [M. castanea (McNeill 1887) M. missouriensis Chamberlin 1928 and M. davidcauseyi (Causey 1950a)], and the latter contains two new ones (M. dilatata [M. d. dilatata, M. d. sigmoidea], and M.
rhysodesmoides). Castanaria Causey 1950b is returned to synonymy under Mimuloria, and C. depalmai Causey 1950b is placed under M. castanea, thereby constituting a new synonymy. The fi rst illustrations of the holotype gonopods of Fontaria oblonga C. L. Koch 1847 and N. minor Chamberlin 1918a unequivocally establish their identities, and the convoluted nomenclatural tangle involving Oenomaea Hoffman 1964 and O. pulchella (Bollman 1889a) is detailed. Whether in Oenomaea or a new genus, separate generic status seems appropriate for Nannariini with subterminal solenomeres; N. morrisoni Hoffman 1948 and its potential synonym N. shenandoa Hoffman 1949 may also belong here. Initial tribal localities are reported from Alabama, South Carolina, and coastal Virginia and Maryland, and “O. pulchella” occurs in northern Alabama north/west of the Tennessee River; M. castanea is newly recorded from Missouri and Tennessee. A horizontally subtriangular distribution in the eastern and midwestern states is projected for Nannariini, which even occur on South Bass Island, Ohio, in Lake Erie, and may thus inhabit
nearby Pelee Island, Ontario, Canada.
A trimaculate male of the diplopod genus Apheloria Chamberlin (Polydesmida: Xystodesmidae/-inae: Apheloriini) from 1.3 km (0.8 mi) west of McKenney, Dinwiddie County (Co.), Virginia, is designated the Neotype of Julus virginiensis Drury 1770, thereby stabilizing the earliest name for a North American milliped and authenticating its prior assignment to this taxon. The existing concept of Apheloria is accepted in the absence of a revisionary treatment, and a modern description of A. v. virginiensis with gonopod drawings and color photos is provided. Drury’s original account and his letter to the Virginian who sent him the original specimens are quoted verbatim to eliminate future library searches. The specific name has been associated with at least three genera, and its confusing history is clarified by summarizing works in each. Authentic localities, mapped to the extent now possible, reveal a distribution south of the James River in piedmont and coastal Virginia that extends southwestward to the Blue Ridge foothills and at least as far south in North Carolina (NC) as Greensboro, the “Triangle” (Raleigh/Durham/Chapel Hill region), and Albemarle Sound in the east. Based on the holotypes, A. aspila and A. tigana, both by Chamberlin, are placed in synonymy under A. v. virginiensis (syns. nov.), and although its status is still under review, A. waccamana Chamberlin, whose type locality is Lake Waccamaw, Columbus Co., in southeastern NC, may be the correct name for today’s A. tigana. All samples so labeled must be reexamined for misidentifications of A. v. virginiensis.
New data on Odonata of the Guadalcanal Island, Solomon Islands are provided following a recently completed Rapid Biodiversity Assessment of the Tetena Haiaja ridge. Two new species, Lieftinckia ulunorum and Procordulia valevahalo are described.
The first is a new member of the Solomon Islands endemic genus while the second is a new genus for the country and the second validated species from the Corduliidae family known from this Pacific archipelago. As L. ulunorum is found to be very closely related to formerly known L. lairdi Lieftinck, 1963, which was also collected during the field trip, both are described in detail based on mature adults and teneral specimens. Comparison with L. salomonis Kimmins, 1957 (investigated only from figures published in the original species description) and Salomoncnemis gerdae Lieftinck, 1987 (also sampled during this study) were provided as well.
Additional morphological data is given on the following species: Teinobasis bradleyi Kimmins, 1957, female is illustrated here for the first time; Anax sp. cf. gibbosulus, second record of the genus for the country and Gynacantha amphora Marinov & Theischinger, 2012, originally described by a single male, here the description of the female is provided.
All other species collected during the field trip will be published separately in the final expedition report.
The genus Afronurus has several very common mayfly species in China and they are widely distributed in this country. Some of them are quite similar to each other in both imaginal and nymphal stages. However, these species have not been systematically compared and reviewed so far. In this study, six species are recognized. All nymphs of them share the following characters: gills V–VI with additional arrow-like accessory lobes, branched dentisetae, two rows of bristles and setae on hindtibiae and spotted abdominal terga. The males have divergent penes and clearly expressed titillators. The nymphs of the new species A. drepanophyllus sp. nov. have sickle-like gills I, spotted and striped body color, and males have unique genitalia. The nymphal stages of A. furcatus and A. hunanensis, which are associated and described for the first time, have similar body color to A. drepanophyllus sp. nov., but their pale dots on the head capsules and the shape of the hypopharynx are different. Keys to males and nymphs of the six species are provided.
The following five species of Dermestidae (Coleoptera) are recorded for the first time from Guatemala: Attagenus fasciatus (Thunberg), Dermestes (Dermestinus) caninus caninus Germar, Orphinus fulvipes (Guérin-Méneville), Trogoderma simplex Jayne and Thorictodes heydeni Reitter. The species are recorded from the Guatemalan departments of Petén, Izabal and Zacapa.
Twenty previously known species of Fissocantharis Pic, 1921 and Micropodabrus Pic, 1920 from Taiwan are illustrated and described with the genitalia of both sexes and or abdominal sternite VIII of female. The following reconfirmed combinations are proposed, Micropodabrus chujoi (Wittmer, 1972), M. mucronata (Wittmer, 1979), M. multicostata (Wittmer, 1982) and M. nodicornis (Wittmer, 1982), which were all originally described in Kandyosilis Pic, 1929. Two new species are described, Fissocantharis nigriceps Y. Yang & Okushima sp. nov. and Micropodabrus brunneipennis Y. Yang & Okushima sp. nov., which are provided with the illustrations of aedeagus and photos of male habitus.
Balkan populations of Rafalskia olympica (KULCZYNSKI, 1903) are distinguished as separate subspecies Rafalskia olympica bulgarica ST ARI::GA, 1963 novo stat. Certain novel details of the R. olympica female body structure are presented. It is stated that Metaplatybunus drenskii SILHAVY, 1965 is not a synonym of R. olympica.
A two week trip to Costa Rica was conducted between 26 May and 8 June 2013, sampling odonates in several provinces along the center to the pacific southern portionof the country. A total of 86 species in 34 genera were found, including 16 species of the genus Argia. Lists of all species by locality, photographs of live specimens, and illustrations and notes of described species of Argiaare presented to facilitate identification to other collectors.
A contribution to the taxonomy of the genus Pelecium Kirby (Coleoptera: Carabidae: Peleciini)
(2024)
Pelecium Kirby, 1817 is a neotropical genus of flightless carabid beetles comprising 34 species, distributed from Panama to middle Argentina. Most species of Pelecium are known from short series and few localities, in some cases only from the holotype. Male and female abdominal terminalia are not described for the majority of the species, a situation that makes it difficult to describe new species or to study intraspecific variation. Here, we describe nine new species based on individuals from Brazil: Pelecium buckupi sp. nov., P. fistulosus sp. nov. and P. zaguryi sp. nov. from the Centre-West region, P. belloi sp. nov., P. chrissquirei sp. nov., P. straneoi sp. nov. and P. zophos sp. nov. from the Southeast region, and P. balli sp. nov. and P. grossii sp. nov. from the South region. We also provide new distributional records and descriptions of abdominal terminalia for twelve species: Pelecium atroviolaceum Straneo & Ball, 1989, P. bolivianum Straneo & Ball, 1989, P. cyanipes Kirby, 1817, P. helenae Straneo & Ball, 1989, P. laeve Chaudoir, 1854, P. negrei Straneo, 1962, P. drakei Quedenfeldt, 1890, P. punctatostriatum Straneo, 1970, P. purpureum Straneo, 1955, P. rotundipenne Schaum, 1860, P. striatum Straneo, 1955 and P. violaceum Brullé, 1838.
Poster presentation: Introduction We here focus on constructing a hierarchical neural system for position-invariant recognition, which is one of the most fundamental invariant recognition achieved in visual processing [1,2]. The invariant recognition have been hypothesized to be done by matching a sensory image of a particular object stimulated on the retina to the most suitable representation stored in memory of the higher visual cortical area. Here arises a general problem: In such a visual processing, the position of the object image on the retina must be initially uncertain. Furthermore, the retinal activities possessing sensory information are being far from the ones in the higher area with a loss of the sensory object information. Nevertheless, with such recognition ambiguity, the particular object can effortlessly and easily be recognized. Our aim in this work is an attempt to resolve such a general recognition problem. ...
Since first of January 2015, the EU-regulation 1143/2014 obligates all member states to conduct costbenefit analyses in preparation of control programs for invasive alien species to minimize and mitigate their impacts. In addition, with ratification of the Rio Declaration and the amended Federal Nature Conservation Act, Germany is committed to control any further spread of invasive species. This is the first cost-benefit analysis estimating positive welfare effects and societal importance of H. mantagezzianum invasion control in Germany. The paper analyses possible control options limiting stands of giant hogweeds (H. mantegazzianum) based on survey data of n = 287 German districts. We differentiate between several control options (e.g. root destruction, mechanical cutting or mowing, chemical treatment and grazing) depending on infested area size and protection status. The calculation of benefits is based on stated preference results (choice experiment; n = 282). For the cost side, we calculate two different invasion scenarios (i) no re-infestation after successfully conducted control measures (optimistic) and (ii) re-infestation twice after conducting control measures occurring within ten years (pessimistic). Minimum costs of eradication measures including a time span of ten years and a social discount rate of 1% result in a total of 3,467,640 € for optimistic scenario and 6,254,932 € for pessimistic invasion scenario, where no success of the first eradication attempt is assumed. Benefits of invasion control in Germany result in a total of 238,063,641 € per year and overassessment-factor corrected in 59,515,910 € per year.
India is a large country in Asia, and covers the transition zone between the Palaearctic and Indomalayan biogeographic realms, with influences from both. Present in India are members of the genus Andrena, an enormous bee genus distributed predominantly throughout the Holarctic, with the greatest Indian diversity in the Himalayan region due to its Palaearctic influences. Despite early studies in the late 19th and early 20th centuries, there has been almost no work on this group in India during the past century. A revision of type and non-type museum material combined with new collections has produced a revised total of 36 species of Andrena for India, including 11 species reported for the first time as well as the newly described Andrena (Melandrena) kedarnatha Wood & Gautam sp. nov. (northern India and Nepal) and Andrena (Simandrena) tungnatha Wood & Gautam sp. nov. (northern India). The true holotype of A. (Euandrena) communis Smith, 1879 is definitively located. Andrena burkelii Bingham, 1908 is synonymised with A. (Pallandrena) morosa Cameron, 1897. Lectotypes are designated for A. (Euandrena) murreensis Cockerell, 1923 and A. (incertae sedis) comberima beharica Cockerell, 1920. Further comments are made on the status of Andrena taxa described from India for which type material is and is not currently available. Thirty additional Andrena taxa suggested as present in the Indian fauna are excluded as either erroneous or lacking supporting data. These results illustrate the extent to which study of the Indian Andrena fauna has been confused, and provide a more stable taxonomic base for future studies in this country.
Critical taxonomic analysis of the Hydrellia pakistanae species group yielded H. pakistanae Deonier, H. sarahae, n.sp. (composed of H. sarahae sarahae, n.ssp. in China and H. sarahae laticapsula, n.ssp. in India and Pakistan), H. balciunasi Bock known only from Australia, and a related species, H. bogorae, n.sp. from Java, Indonesia. These species all have the same primary host-plant species, i.e., Hydrilla verticillata, a fact making them all potential biocontrol agents for this aquatic plant pest in North America and other areas where it has pest status. Morphology is summarized as well as perceived synapomorphies of this species group.
Here we present a formal description of Biremis panamae Barka, Witkowski et Weisenborn sp. nov., which was isolated from the marine littoral environment of the Pacific Ocean coast of Panama. The description is based on morphology (light and electron microscopy) and the rbcL, psbC and SSU sequences of one clone of this species. The new species is included in Biremis due to its morphological features; i.e. two marginal rows of foramina, chambered striae, and girdle composed of numerous punctate copulae. The new species also possesses a striated valve face which is not seen in most known representatives of marine littoral Biremis species. In this study we also present the relationship of Biremis to other taxa using morphology, DNA sequence data and observations of auxosporulation. Our results based on these three sources point to an evolutionary relationship between Biremis, Neidium and Scoliopleura. The unusual silicified incunabular caps present in them are known otherwise only in Muelleria, which is probably related to the Neidiaceae and Scoliotropidaceae. We also discuss the relationship between Biremis and the recently described Labellicula and Olifantiella.
The regulation of cellular copper homeostasis is crucial in biology. Impairments lead to severe dysfunctions and are known to affect aging and development. Previously, a loss-of-function mutation in the gene encoding the copper-sensing and copper-regulated transcription factor GRISEA of the filamentous fungus Podospora anserina was reported to lead to cellular copper depletion and a pleiotropic phenotype with hypopigmentation of the mycelium and the ascospores, affected fertility and increased lifespan by approximately 60% when compared to the wild type. This phenotype is linked to a switch from a copper-dependent standard to an alternative respiration leading to both a reduced generation of reactive oxygen species (ROS) and of adenosine triphosphate (ATP). We performed a genome-wide comparative transcriptome analysis of a wild-type strain and the copper-depleted grisea mutant. We unambiguously assigned 9,700 sequences of the transcriptome in both strains to the more than 10,600 predicted and annotated open reading frames of the P. anserina genome indicating 90% coverage of the transcriptome. 4,752 of the transcripts differed significantly in abundance with 1,156 transcripts differing at least 3-fold. Selected genes were investigated by qRT-PCR analyses. Apart from this general characterization we analyzed the data with special emphasis on molecular pathways related to the grisea mutation taking advantage of the available complete genomic sequence of P. anserina. This analysis verified but also corrected conclusions from earlier data obtained by single gene analysis, identified new candidates of factors as part of the cellular copper homeostasis system including target genes of transcription factor GRISEA, and provides a rich reference source of quantitative data for further in detail investigations. Overall, the present study demonstrates the importance of systems biology approaches also in cases were mutations in single genes are analyzed to explain the underlying mechanisms controlling complex biological processes like aging and development.
We report here on the taxonomic and molecular diversity of 10 929 terrestrial arthropod specimens, collected on four islands of the Society Archipelago, French Polynesia. The survey was part of the ‘SymbioCode Project’ that aims to establish the Society Islands as a natural laboratory in which to investigate the flux of bacterial symbionts (e.g., Wolbachia) and other genetic material among branches of the arthropod tree. The sample includes an estimated 1127 species, of which 1098 included at least one DNA-barcoded specimen and 29 were identified to species level using morphological traits only. Species counts based on molecular data emphasize that some groups have been understudied in this region and deserve more focused taxonomic effort, notably Diptera, Lepidoptera and Hymenoptera. Some taxa that were also subjected to morphological scrutiny reveal a consistent match between DNA and morphology-based species boundaries in 90% of the cases, with a larger than expected genetic diversity in the remaining 10%. Many species from this sample are new to this region or are undescribed. Some are under description, but many await inspection by motivated experts, who can use the online images or request access to ethanol-stored specimens.
A documented checklist of the Crustacea (Stomatopoda, Decapoda) is provided for the southern Guianas region (sGuianas), a homogeneous ecoregion including Guyana, Suriname, French Guiana and the Brazilian State of Amapá. The history of crustacean collections undertaken there between 1759 and 2022 is summarized. In total, 529 species are listed. Biodiversity varies between countries: 165 species in Guyana; 317 in Suriname, 343 in French Guiana, and 315 in Brazil Amapá, as a direct result of different sampling efforts. There are 22 Stomatopoda and 507 Decapoda, ranked by numerical diversity as Brachyura (206), Caridea (113), Anomura (85), Dendrobranchiata (67) and others (36). The list is analyzed with the species classified by major biotopes, distinguishing those from freshwater, mangroves and estuaries, and frankly marine environments. Regional comparisons are made in the Western Atlantic showing that the sGuianas marine fauna is depauperate compared to that of other regions. This is explained by the influence of the Amazon River plume, carrying desalinated water and fine sediments, which leads to the reduction of coral reef formations in sGuianas. Only a few species of freshwater crabs (genera Kunziana and Microthelphusa) are endemic to the region. The pace of species discovery over the years indicates that the sGuianas fauna remains still imperfectly known and that probably more than 600 species are present in the region.
As a centerpiece of antigen processing, the ATP-binding cassette transporter associated with antigen processing (TAP) became a main target for viral immune evasion. The herpesviral ICP47 inhibits TAP function, thereby suppressing an adaptive immune response. Here, we report on a thermostable ICP47-TAP complex, generated by fusion of different ICP47 fragments. These fusion complexes allowed us to determine the direction and positioning in the central cavity of TAP. ICP47-TAP fusion complexes are arrested in a stable conformation, as demonstrated by MHC I surface expression, melting temperature, and the mutual exclusion of herpesviral TAP inhibitors. We unveiled a conserved region next to the active domain of ICP47 as essential for the complete stabilization of the TAP complex. Binding of the active domain of ICP47 arrests TAP in an open inward facing conformation rendering the complex inaccessible for other viral factors. Based on our findings, we propose a dual interaction mechanism for ICP47. A per se destabilizing active domain inhibits the function of TAP, whereas a conserved C-terminal region additionally stabilizes the transporter. These new insights into the ICP47 inhibition mechanism can be applied for future structural analyses of the TAP complex.
A new artificial regulatory system for essential genes in yeast is described. It prevents translation of target mRNAs upon tetracycline (tc) binding to aptamers introduced into their 5'UTRs. Exploiting direct RNA–ligand interaction renders auxiliary protein factors unnecessary. Therefore, our approach is strain independent and not susceptible to interferences by heterologous expressed regulatory proteins. We use a simple PCR-based strategy, which allows easy tagging of any target gene and the level of gene expression can be adjusted due to various tc aptamer-regulated promoters. As proof of concept, five differently expressed genes were targeted, two of which could not be regulated previously. In all cases, adding tc completely prevented growth and, as shown for Nop14p, rapidly abolished de novo protein synthesis providing a powerful tool for conditional regulation of yeast gene expression.
Spiders from the Tirana district of Albania were investigated. Currently, 78 species from 24 families and a collection of 400 specimens from January to August 2010 were recorded for Tirana. A total of 32 new records for the Albanian fauna are included in the present paper. Agraecina lineata (Simon, 1878) is the first record for the Balkan Peninsula. Saitis graecus Kulczyński, 1905 was known before only from Greece and Bulgaria. Presently, 373 spider species are known for Albania.
Basing on an evaluation of the literature and some unpublished collections, 745 taxa of lichen forming-fungi are reported from the Venezuelan Andes, including 10 infraspecific taxa. Of these taxa 37 are new records for Venezuela: Actinoplaca vulgaris (Müll. Arg.) Vezda & Poelt, Asterothyrium decipiens (Rehm) R. Sant., Calopadia foliicola (Fée) Vezda, C. fusca (Müll. Arg.) Vezda, C. phyllogena (Müll. Arg.) Vezda, Chrysothrix chlorina (Ach.) J. R. Laundon, Cystocoleus ebeneus (Dillwyn) Thwaites, Diploschistes scruposus (Schreb.) Norm., Echinoplacaleucotrichoides (Vain.) R. Sant., Fellhanerabouteillei (Desm.) Vezda, F.dominicana (Vain.) Vezda, F. fuscatula (Müll. Arg.) Vezda, F. sublecanorina (Nyl.) Vezda, Gyalectidium filicinum Müll. Arg., Lecidea limosa Ach., Lepraria neglecta Auct., Ochrolechia africana Vain., Peltigera vainioi Gyelnik, Phyllobathelium nigrum R. Sant. & Tibell, Phyllophialealba R. Sant., Polymeridiumalbidum (Müll. Arg.) R. C. Harris, Porina epiphylla (Fée) Fée, Racodium rupestre Pers., Ramalina asahinae W. Culb. & C. Culb., R. calcarata Krog & Swinsc., R. puiggarii Müll Arg., R. rectangularis Nyl., Rhizoplaca melanophthalma (DC.) Leuckert & Poelt, Strigula antillarum (Fée) Müll. Arg., S. platypoda (Müll. Arg.) R. C. Harris, Tapellaria epiphylla (Müll. Arg.) R. Sant., T.nana (Fée) R. Sant., Tephromela aglaea (Sommerf.) Hertel & Rambold, Tricharia vainioi R. Sant., Trichothelium epiphyllum Müll. Arg., T. bipindense F. Schill. and Vezdaea foliicola Sérusiaux. Another 4 species are new records only for the Venezuelan Andes: Dimerellaepiphylla (Müll. Arg.) Malme, Porinaatrocoerulea Müll. Arg., Ramalina peruviana Ach. and Woessia apiahica (Müll. Arg.) Sérus. A list of synonyms used in the consulted literature is added. Four new combinations are proposed: Dictyonema zahlbruckneri (Schiffn.) V. Marcano, Heterodermia tropica (Kurok.) Sipman, Parmelinopsis cleefii (Sipman) V. Marcano & Sipman and Phyllobaeislinearis (De Vries) V. Marcano & Sipman.
This paper presents new data, characteristic features, standard body measurements and illustrations of the rare European linyphiid spider Glyphesis taoplesius Wunderlich, 1969; which is recorded here for the first time in Slovakia. The species was found with high abundance in pitfall traps exposed in a floodplain forest near a water reservoir in the lowland Podunajská rovina.
With an incident in Palo Duro Canyon, Texas, USA, Scolopendra heros Girard (Chilopoda: Scolopendromorpha: Scolopendridae) becomes the third centipede species known to prey on bats; S. gigantea Linnaeus and S. viridicornis Newport have been so documented in Venezuela and Brazil, respectively. The Texas predation was interrupted by the predator/prey pair’s falling around 15–20 m from the canyon wall and, perhaps also, by human presence where they landed. The centipede uncoiled and retreated to shelter under a nearby rock and, after initial immobilization, so did the bat.
The ambersnails (Succineidae), found nearly worldwide, are considered a very challenging group to classify and identify with even genus-level identifications requiring dissection. In this study, we use mitochondrial and nuclear DNA markers, shell morphometrics, and anatomical dissection to examine fresh material collected from the type localities of two nominal species in Oxyloma (Neoxyloma). We conclude from these evidence that Oxyloma salleanum (L. Pfeiffer, 1850) and Oxyloma effusum (L. Pfeiffer, 1853) are conspecific, and accordingly reduce O. effusum to the status of junior synonymy. We present a redescription of O. salleanum.
Recent conclusions on the limits of the Leucobryaceae and on the function of the Leucobryaceous leaf are used as basis for further observations on evolution of the group. Eight genera are recognized in the family; 1. Leucobryum, 2. Steyermarkiella, 3. Ochrobryum, 4. Arthrocormus, 5. Schistomitrium, 6. Holomitriopsis, 7. Cladopodanthus, and 8. Octoblepharum. The leaf form, capsule shape, and peristome substructure of Leucobryum seems to derive from a Campylopus-type member of the Dicranaceae. Four basic stages are noted in the functional evolution of the family. 1. The stratification of the leaf into leucocysts and chlorocyst layers with leucocysts holding water and internally generated gas; 2. The shift from soil substrates seen mostly in Temperate Zone Leucobryum to rotten wood substrates or epiphytism; 3. Increasing reliance on vegetative reproduction with reduction of reliance on sporophytes; 4. Morphogenetic increase of the number of chlorocysts in the leaf. Geographical concentrations of the genera are noted, and distributions between hemispheres are apparently mostly by way of the South Atlantic. The use of functional considerations in evolutionary studies is emphasized. The retention of paraphyletic groups in taxonomy is defended.
The tribe Acanthaclisini Navas contains 14 described genera which we recognize as valid. We have reared larvae of 8 of these (Acanthaclisis Rambur, Centroclisis Navas, Fadrina Navas, Paranthaclisis Banks, Phanoclisis Banks, Synclisis Navas, Syngenes Kolbe, and Vella Navas). In addition, we have studied preserved larvae from Australia which probably represent the genus Heoclisis Navas. This represents the majority of the taxa, lacking only the small genera Avia Navas, Cosina Navas, Madrasta Navas, Mestressa Navas, and Stiphroneuria Gerstaecker. Studies of these larvae have revealed structural differences, especially of the mandible, which we have employed to provide identification of these genera by means of descriptions, keys, and illustrations. Also, since no modern key exists, we are providing a key to the genera based on adults which will provide some further insight on the generic relationships. Observations on the tribal differences of Myrmeleontidae based on larvae are made with a preliminary key to the known tribes.
A generic-level phylogenetic review of the Macrodactylini (Coleoptera: Scarabaeidae: Melolonthinae)
(2007)
A revision of the generic classification of the tribe Macrodactylini is provided using morphological characters of adults. The revision is based on a taxonomic analysis of 80 genera historically placed in the tribe and a cladistic analysis of 32 genera conforming to the new tribal definition. Synapomorphies for the newly defined Macrodactylini include: the length of the fifth ventrite longer than the fourth ventrite when viewed ventrally, fifth ventrite lacking a complete suture between the tergite and sternite, and the metathoracic tibial spurs (if present) offset, allowing the metatarsus to move past them. Thirty-two genera constitute the newly defined Macrodactylini: Agaocnemis Moser, Alvarinus Blanchard, Ancistrosoma Curtis, Anomonyx Saylor, Anoplosiagum Blanchard, Astaenosiagum Martínez, Barybas Blanchard, Calodactylus Blanchard, Ceraspis Le Peletier and Serville, Ceratolontha Arrow, Chariodactylus Moser, Chariodema Blanchard, Chremastodus Solier, Clavipalpus Laporte, Ctenotis Burmeister, Dasyus Le Peletier and Serville, Dicrania Le Peletier and Serville, Gama Blanchard, Gastrohoplus Moser, Hercitis Burmeister, Hieritis Burmeister, Isonychus Mannerheim, Issacaris Fairmaire, Macrodactylus Dejean, Manodactylus Moser, Manopus Laporte, Oedichira Burmeister, Pectinosoma Arrow, Plectris Le Peletier and Serville, Pristerophora Harold, Rhinaspis Perty, and Schizochelus Blanchard. Sixteen genera are removed or their removal is confirmed from the historical Macrodactylini: Coenonycha Horn, Dichelonyx Harris, and Gymnopyge Linell (to Dichelonychini), Homalochilus Blanchard, Homoliogenys Gutiérrez, Liogenys Guérin-Méneville, and Pacuvia Curtis (to Diplotaxini), Diphycerus Deyrolle and Fairmaire (to Diphycerini), Hyperius Deyrolle and Fairmaire (to Melolonthini), Apterodemidea Gutiérrez (to Sericoidini), Blepharotoma Blanchard (to Liparetrini ), Diaphylla Erichson (removed from Macrodactylini, and currently unplaced into existing melolonthine tribes), Hilarianus Blanchard, Manonychus Moser, Pseudoisonychus Frey (removed from Macrodactylini, and currently unplaced into existing melolonthine tribes) and Zabacana Saylor (to Epectinaspis (Rutelinae)). Nine new generic synonyms are proposed: Corminus Burmeister, junior synonym of Alvarinus Blanchard; Ctilocephala Burmeister, Eubarybas Gutiérrez, and Pseudohercitis Moser, each a junior synonym of Barybas Blanchard; Byrasba Harold, Rhinaspoides Moser, and Ulomenes Blanchard, each a junior synonym of Rhinaspis Perty; Demodema Blanchard, a junior synonym of Plectris Le Peletier and Serville; and Pachylotoma Blanchard, junior synonym of Gama Blanchard.
Aging of biological systems is controlled by various processes which have a potential impact on gene expression. Here we report a genome-wide transcriptome analysis of the fungal aging model Podospora anserina. Total RNA of three individuals of defined age were pooled and analyzed by SuperSAGE (serial analysis of gene expression). A bioinformatics analysis identified different molecular pathways to be affected during aging. While the abundance of transcripts linked to ribosomes and to the proteasome quality control system were found to decrease during aging, those associated with autophagy increase, suggesting that autophagy may act as a compensatory quality control pathway. Transcript profiles associated with the energy metabolism including mitochondrial functions were identified to fluctuate during aging. Comparison of wild-type transcripts, which are continuously down-regulated during aging, with those down-regulated in the long-lived, copper-uptake mutant grisea, validated the relevance of age-related changes in cellular copper metabolism. Overall, we (i) present a unique age-related data set of a longitudinal study of the experimental aging model P. anserina which represents a reference resource for future investigations in a variety of organisms, (ii) suggest autophagy to be a key quality control pathway that becomes active once other pathways fail, and (iii) present testable predictions for subsequent experimental investigations.
Recent phylogenomic studies have failed to conclusively resolve certain branches of the placental mammalian tree, despite the evolutionary analysis of genomic data from 32 species. Previous analyses of single genes and retroposon insertion data yielded support for different phylogenetic scenarios for the most basal divergences. The results indicated that some mammalian divergences were best interpreted not as a single bifurcating tree, but as an evolutionary network. In these studies the relationships among some orders of the super-clade Laurasiatheria were poorly supported, albeit not studied in detail. Therefore, 4775 protein-coding genes (6,196,263 nucleotides) were collected and aligned in order to analyze the evolution of this clade. Additionally, over 200,000 introns were screened in silico, resulting in 32 phylogenetically informative long interspersed nuclear elements (LINE) insertion events.
The present study shows that the genome evolution of Laurasiatheria may best be understood as an evolutionary network. Thus, contrary to the common expectation to resolve major evolutionary events as a bifurcating tree, genome analyses unveil complex speciation processes even in deep mammalian divergences. We exemplify this on a subset of 1159 suitable genes that have individual histories, most likely due to incomplete lineage sorting or introgression, processes that can make the genealogy of mammalian genomes complex.
These unexpected results have major implications for the understanding of evolution in general, because the evolution of even some higher level taxa such as mammalian orders may sometimes not be interpreted as a simple bifurcating pattern.
A glance at the Odonata of the Cambodian coastal mountainous regions : end of dry season in 2010
(2010)
During a visit to the coastal regions of Cambodia within the Provinces of Koh Kong, Kampong Saom, Kampot and Kep within April 12-23, 2010, 59 species of Odonata were found. Of these, 51 were identified, 2 preliminarily identified (1 by exuviae, 1 to a known species with the valid name unresolved), 1 dubious (Aciagrion cf. pallidum), 3 not identified (just visual observations) and 2 seemingly undescribed, namely Burmagomphus sp. and Microgomphus sp. Fourteen species were recorded for the first time for this country, namely Neurobasis chinensis, Dysphaea gloriosa, Euphaea masoni, Onychargia atrocyana, Copera marginipes, Copera vittata, Prodasineura autumnalis Prodasineura verticalis sensu Asahina, 1983, Lathrecista asiatica, Orthetrum chrysis, Rhyothemis obsolescens, Tramea transmarina euryale, Zygonyx iris malayana, Zyxomma petiolatum; taking the current checklist for Cambodia up to 83 species. Some features of the collected specimens relevant to their taxonomy are discussed. Brief field notes are provided and Odonata records enumerated. The habitats and community of Odonata at the Cardamon Mts. foothills at the end of dry season are discussed.
In this study, we report the results of a taxonomic survey of terrestrial isopods from Isla Grande, a ca 2 km2 island located in the north of Cartagena de Indias, Colombia. We found a total of 17 species belonging to nine families and 10 genera. Eight of these species have been reported only from the Caribbean region, nine are recorded for the first time in Colombia, and three are new to science and described here: Tylos negroi López-Orozco, Carpio-Díaz & Campos-Filho sp. nov., Stenoniscus nestori López-Orozco, Taiti & Campos-Filho sp. nov. and Armadilloniscus luisi Carpio-Díaz, Taiti & Campos-Filho sp. nov. Our revision also determined that the genus Microphiloscia is a junior synonym of Halophiloscia; and moreover, Halophiloscia trichoniscoides comb. nov. is redescribed. We also provide illustrations for Armadilloniscus caraibicus and Armadilloniscus ninae. Most (16) of the species were found in coastal habitats (i.e., beaches, coastal lagoons and mangroves), whereas the tropical dry forest harbored only two species. Molecular phylogenetic inferences supported the presence of three species of Tylos in Isla Grande (i.e., one new species and a new lineage within each of two known species). Our work on Tylos highlights the importance of combining taxonomic and molecular analyses to support taxonomic decisions and uncover cryptic diversity. Due to the multiple threats to Caribbean coastal habitats, taxonomic and molecular genetic research are urgently needed to understand biodiversity patterns of oniscideans in the Caribbean, which will inform strategies for their protection. Such studies will also contribute to our knowledge of their evolution, ecology, and potential uses, as well as the factors that have shaped the remarkable Caribbean biodiversity.
A glimpse of the tropics : spiders (Araneae) in the greenhouses of the Botanic Garden Berlin-Dahlem
(2008)
In a survey of the spider fauna in greenhouses of the Botanic Garden Berlin-Dahlem, 30 spider species were recorded. Two species are new to Europe: Theotima minutissima (Petrunkevitch, 1929) and Heteroonops spinimanus (Simon, 1891). T. minutissima is the first member of the family Ochyroceratidae reported from Europe. Oecobius navus Blackwall, 1859 is new to Central Europe. Triaeris stenaspis Simon, 1891, is recorded from Germany for the first time. Zodarion italicum (Canestrini, 1868) is new to eastern Germany. Despite the discovery of some species previously unknown to Germany, the spider fauna in the Botanic Garden consisted mainly of wellknown synanthropic species and common inhabitants of greenhouses. Several alien spiders recently found in greenhouses, garden centers and houses were not recorded in the Botanic Garden. The species composition of the exotic spider fauna in greenhouses seems to depend chiefly on the specific modes of acquisition of plants and plant substrate.
Poster presentation: Introduction We here address the problem of integrating information about multiple objects and their positions on the visual scene. A primate visual system has little difficulty in rapidly achieving integration, given only a few objects. Unfortunately, computer vision still has great difficultly achieving comparable performance. It has been hypothesized that temporal binding or temporal separation could serve as a crucial mechanism to deal with information about objects and their positions in parallel to each other. Elaborating on this idea, we propose a neurally plausible mechanism for reaching local decision-making for "what" and "where" information to the global multi-object recognition. ...
It is with great joy and imbued with the contagious Christmas spirit lived in Macaronesia that I present the second issue of the sixth volume of this journal. This issue consolidates the new path tracked the beginning of 2016, which focused on the renewal of the editorial board and the broadening of the scope of the journal to new scientific areas.
The membrane proximal external region (MPER) of the HIV-1 glycoprotein gp41 is targeted by the broadly neutralizing antibodies 2F5 and 4E10. To date, no immunization regimen in animals or humans has produced HIV-1 neutralizing MPER-specific antibodies. We immunized llamas with gp41-MPER proteoliposomes and selected a MPER-specific single chain antibody (VHH), 2H10, whose epitope overlaps with that of mAb 2F5. Bi-2H10, a bivalent form of 2H10, which displayed an approximately 20-fold increased affinity compared to the monovalent 2H10, neutralized various sensitive and resistant HIV-1 strains, as well as SHIV strains in TZM-bl cells. X-ray and NMR analyses combined with mutagenesis and modeling revealed that 2H10 recognizes its gp41 epitope in a helical conformation. Notably, tryptophan 100 at the tip of the long CDR3 is not required for gp41 interaction but essential for neutralization. Thus bi-2H10 is an anti-MPER antibody generated by immunization that requires hydrophobic CDR3 determinants in addition to epitope recognition for neutralization similar to the mode of neutralization employed by mAbs 2F5 and 4E10.