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Institute
Biological as well as advanced artificial intelligences (AIs) need to decide which goals to pursue. We review nature's solution to the time allocation problem, which is based on a continuously readjusted categorical weighting mechanism we experience introspectively as emotions. One observes phylogenetically that the available number of emotional states increases hand in hand with the cognitive capabilities of animals and that raising levels of intelligence entail ever larger sets of behavioral options. Our ability to experience a multitude of potentially conflicting feelings is in this view not a leftover of a more primitive heritage, but a generic mechanism for attributing values to behavioral options that can not be specified at birth. In this view, emotions are essential for understanding the mind. For concreteness, we propose and discuss a framework which mimics emotions on a functional level. Based on time allocation via emotional stationarity (TAES), emotions are implemented as abstract criteria, such as satisfaction, challenge and boredom, which serve to evaluate activities that have been carried out. The resulting timeline of experienced emotions is compared with the “character” of the agent, which is defined in terms of a preferred distribution of emotional states. The long-term goal of the agent, to align experience with character, is achieved by optimizing the frequency for selecting individual tasks. Upon optimization, the statistics of emotion experience becomes stationary.
We analyzed a eukaryotically encoded rubredoxin from the cryptomonad Guillardia theta and identified additional domains at the N- and C-termini in comparison to known prokaryotic paralogous molecules. The cryptophytic N-terminal extension was shown to be a transit peptide for intracellular targeting of the protein to the plastid, whereas a C-terminal domain represents a membrane anchor. Rubredoxin was identified in all tested phototrophic eukaryotes. Presumably facilitated by its C-terminal extension, nucleomorph-encoded rubredoxin (nmRub) is associated with the thylakoid membrane. Association with photosystem II (PSII) was demonstrated by co-localization of nmRub and PSII membrane particles and PSII core complexes and confirmed by comparative electron paramagnetic resonance measurements. The midpoint potential of nmRub was determined as +125 mV, which is the highest redox potential of all known rubredoxins. Therefore, nmRub provides a striking example of the ability of the protein environment to tune the redox potentials of metal sites, allowing for evolutionary adaption in specific electron transport systems, as for example that coupled to the PSII pathway.
The core of this work is represented by the investigation of the chiral phase transition, using Monte Carlo simulations and unimproved staggered fermions, both in the weak and strong coupling regimes of Quantum Chromodynamics. Based on recent results from Monte Carlo simulations, both using unimproved staggered fermions and Wilson fermions, the chiral phase transition in the continuum and chiral limit shows compatibility with a second-order phase transition for Nf (number of flavours) in range [2:7], at zero baryon chemical potential. This achievement relies on the analytic continuation of Nf to non-integer values on the lattice, which allows to make use of extrapolation techniques to the chiral limit, where simulations are not possible. Furthermore, these results provide a resolution to the ambiguous scenario for Nf = 2 in the chiral limt. The first part of this thesis is devoted to the investigation of the chiral phase transition when a non-zero imaginary baryon chemical potential is involved, whose value corresponds to the 81% of the Roberge-Weiss one. Using the same extrapolation techniques aforementioned, the order of the chiral phase transition in the continuum and chiral limit shows compatibility with a second-order phase transition for Nf in range [2:6], highlighting a lack of dependence of the order of the chiral phase transition on the imaginary baryon chemical potential value. The second part of this thesis is about the study of the extension of the first-order chiral region in the strong coupling regime, at zero baryon chemical potential. Using Monte Carlo techniques, this can be done by investigating the Z2 boundary on a coarse lattice, whose temporal extent reads Nt = 2, and simulations are realised for Nf = 4, 8. The results in the weak coupling regime show, for $Nt = 8, 6, 4 and fixed Nf value, an inflating first-order chiral region. As in the strong coupling limit a second-order chiral phase transition is expected, the first-order chiral region has to shrink as the strong coupling regime is approached, resulting in a non-monotonic behaviour of the Z2 boundary. For Nf = 8, a critical mass on the Z2 boundary has been obtained, confirming the expected non-monotonic behaviour. For Nf = 4 the results do not provide a unique conclusion: Either a Z2 boundary at extremely low bare quark mass or a second-order chiral phase transition in the O(2) universality class in the chiral limit can take place. In addition to the two main topics, the performances of the second-order minimum norm integrator (2MN) and the fourth-order minimum norm integrator (4MN) have been compared, after implementing the 4MN one in the CL2QCD code used to realise our simulations. The 2MN integrator had already been implemented in the code since the first version was released. The two integrators belong to the class of symplectic integrators and represent an essential component of the RHMC algorithm, involved in our investigation. This step is extremely important, in order to guarantee the best quality when collecting data from simulations, and the results of the comparison suggested to favor the 2MN integrator, for both the topics.
A powerful technique to distinguish the enantiomers of a chiral molecule is the Coulomb Explosion Imaging (CEI). This technique allows us to determine the handedness of a single molecule. In CEI, the molecule becomes charged by losing many electrons in a very short period of time by interacting with the light. The repulsion forces between the positive charged particles of the molecule leads the molecule to break into parts-fragments. By measuring the three vector momentum of (at least) four fragments, the handedness observable can be determined. In this thesis, CEI is induced by absorption of a single high energy photon, which creates an inner-shell hole (K shell) of the molecule. The subsequent cascade of Auger decays lead to fragmentation. We decided to work with the formic acid molecule in this thesis. Two different experiments were conducted. The first experiment focused on exciting electrons to different energy states, while the second experiment focused on extracting directly a photoelectron to the continuum and measure the angular distribution of the photoelectron in the molecular frame. The primary goal was to search for chiral signal in a pure achiral planar molecule under the previous electron processes. The results of these findings were further implemented to two more molecules.
In the framework of the LHC Injectors Upgrade Project (LIU), the CERN Proton Synchrotron Booster (PSB) went through major upgrades resulting in new effects to study, challenges to overcome and new parameter regimes to explore. To assess the achievable beam brightness limit of the machine, a series of experimental and computational studies in the transverse planes were performed. In particular, the new injection scheme induces optics perturbations that are strongly enhanced near the half-integer resonance. In this thesis, methods for dynamically measuring and correcting these perturbations and their impact on the beam performance will be presented. Additionally, the quality of the transverse beam distributions and strategies for improvement will be addressed. Finally, the space charge effects when dynamically crossing the half-integer resonance will be characterized. The results of these studies and their broader significance beyond the PSB will be discussed.
IHMCIF: an extension of the PDBx/mmCIF data standard for integrative structure determination methods
(2024)
IHMCIF (github.com/ihmwg/IHMCIF) is a data information framework that supports archiving and disseminating macromolecular structures determined by integrative or hybrid modeling (IHM), and making them Findable, Accessible, Interoperable, and Reusable (FAIR). IHMCIF is an extension of the Protein Data Bank Exchange/macromolecular Crystallographic Information Framework (PDBx/mmCIF) that serves as the framework for the Protein Data Bank (PDB) to archive experimentally determined atomic structures of biological macromolecules and their complexes with one another and small molecule ligands (e.g., enzyme cofactors and drugs). IHMCIF serves as the foundational data standard for the PDB-Dev prototype system, developed for archiving and disseminating integrative structures. It utilizes a flexible data representation to describe integrative structures that span multiple spatiotemporal scales and structural states with definitions for restraints from a variety of experimental methods contributing to integrative structural biology. The IHMCIF extension was created with the benefit of considerable community input and recommendations gathered by the Worldwide Protein Data Bank (wwPDB) Task Force for Integrative or Hybrid Methods (wwpdb.org/task/hybrid). Herein, we describe the development of IHMCIF to support evolving methodologies and ongoing advancements in integrative structural biology. Ultimately, IHMCIF will facilitate the unification of PDB-Dev data and tools with the PDB archive so that integrative structures can be archived and disseminated through PDB.
The spike protein of SARS-CoV-2 is a highly flexible membrane receptor that triggers the translocation of the virus into cells by attaching to the human receptors. Like other type I membrane receptors, this protein has several extracellular domains connected by flexible hinges. The presence of these hinges results in high flexibility, which consequently results in challenges in defining the conformation of the protein. Here, We developed a new method to define the conformational space based on a few variables inspired by the robotic field’s methods to determine a robotic arm’s forward kinematics. Using newly performed atomistic molecular dynamics (MD) simulations and publicly available data, we found that the Denavit-Hartenberg (DH) parameters can reliably show the changes in the local conformation. Furthermore, the rotational and translational components of the homogenous transformation matrix constructed based on the DH parameters can identify the changes in the global conformation of the spike and also differentiate between the conformation with a similar position of the spike head, which other types of parameters, such as spherical coordinates, fail to distinguish between such conformations. Finally, the new method will be beneficial for looking at the conformational heterogeneity in all other type I membrane receptors.
Highlights
• Sampling the large conformational space of disordered proteins requires extensive molecular dynamics (MD) simulations.
• Fragment assembly complements MD simulations to produce extensive ensembles of disordered proteins with atomic detail.
• Hierarchical chain growth (HCG) ensembles capture key experimental descriptors “out of the box”.
• HCG has revealed local structural characteristics associated with protein dysfunction in neurodegeneration.
Abstract
Disordered proteins and nucleic acids play key roles in cellular function and disease. Here, we review recent advances in the computational exploration of the conformational dynamics of flexible biomolecules. While atomistic molecular dynamics (MD) simulation has seen a lot of improvement in recent years, large-scale computing resources and careful validation are required to simulate full-length disordered biopolymers in solution. As a computationally efficient alternative, hierarchical chain growth (HCG) combines pre-sampled chain fragments in a statistically reproducible manner into ensembles of full-length atomically detailed biomolecular structures. Experimental data can be integrated during and after chain assembly. Applications to the neurodegeneration-linked proteins α-synuclein, tau, and TDP-43, including as condensate, illustrate the use of HCG. We conclude by highlighting the emerging connections to AI-based structural modeling including AlphaFold2.
This paper reports on Monte Carlo simulation results for future measurements of the moduli of time-like proton electromagnetic form factors, |GE | and |GM|, using the ¯pp → μ+μ− reaction at PANDA (FAIR). The electromagnetic form factors are fundamental quantities parameterizing the electric and magnetic structure of hadrons. This work estimates the statistical and total accuracy with which the form factors can be measured at PANDA, using an analysis of simulated data within the PandaRoot software framework. The most crucial background channel is ¯pp → π+π−,due to the very similar behavior of muons and pions in the detector. The suppression factors are evaluated for this and all other relevant background channels at different values of antiproton beam momentum. The signal/background separation is based on a multivariate analysis, using the Boosted Decision Trees method. An expected background subtraction is included in this study, based on realistic angular distribuations of the background contribution. Systematic uncertainties are considered and the relative total uncertainties of the form factor measurements are presented.
How long does it take to emit an electron from an atom? This question has intrigued scientists for decades. As such emission times are in the attosecond regime, the advent of attosecond metrology using ultrashort and intense lasers has re-triggered strong interest on the topic from an experimental standpoint. Here, we present an approach to measure such emission delays, which does not require attosecond light pulses, and works without the presence of superimposed infrared laser fields. We instead extract the emission delay from the interference pattern generated as the emitted photoelectron is diffracted by the parent ion’s potential. Targeting core electrons in CO, we measured a 2d map of photoelectron emission delays in the molecular frame over a wide range of electron energies. The emission times depend drastically on the photoelectrons’ emission directions in the molecular frame and exhibit characteristic changes along the shape resonance of the molecule.
Upon antibiotic stress Gram-negative pathogens deploy resistance-nodulation-cell division-type tripartite efflux pumps. These include a H+/drug antiporter module that recognizes structurally diverse substances, including antibiotics. Here, we show the 3.5 Å structure of subunit AdeB from the Acinetobacter baumannii AdeABC efflux pump solved by single-particle cryo-electron microscopy. The AdeB trimer adopts mainly a resting state with all protomers in a conformation devoid of transport channels or antibiotic binding sites. However, 10% of the protomers adopt a state where three transport channels lead to the closed substrate (deep) binding pocket. A comparison between drug binding of AdeB and Escherichia coli AcrB is made via activity analysis of 20 AdeB variants, selected on basis of side chain interactions with antibiotics observed in the AcrB periplasmic domain X-ray co-structures with fusidic acid (2.3 Å), doxycycline (2.1 Å) and levofloxacin (2.7 Å). AdeABC, compared to AcrAB-TolC, confers higher resistance to E. coli towards polyaromatic compounds and lower resistance towards antibiotic compounds.
DNA binding redistributes activation domain ensemble and accessibility in pioneer factor Sox2
(2023)
More than 1600 human transcription factors orchestrate the transcriptional machinery to control gene expression and cell fate. Their function is conveyed through intrinsically disordered regions (IDRs) containing activation or repression domains but lacking quantitative structural ensemble models prevents their mechanistic decoding. Here we integrate single-molecule FRET and NMR spectroscopy with molecular simulations showing that DNA binding can lead to complex changes in the IDR ensemble and accessibility. The C-terminal IDR of pioneer factor Sox2 is highly disordered but its conformational dynamics are guided by weak and dynamic charge interactions with the folded DNA binding domain. Both DNA and nucleosome binding induce major rearrangements in the IDR ensemble without affecting DNA binding affinity. Remarkably, interdomain interactions are redistributed in complex with DNA leading to variable exposure of two activation domains critical for transcription. Charged intramolecular interactions allowing for dynamic redistributions may be common in transcription factors and necessary for sensitive tuning of structural ensembles.
Collective flow phenomena are a sensitive probe for the properties of extreme QCD matter. However, their interpretation relies on the understanding of the initial conditions e.g. the eccentricity of the nuclear overlap region. HADES [1] provides a large acceptance combined with a high mass-resolution and therefore allows to study di-electron and hadron production in heavy-ion collisions with unprecedented precision. In this contribution, the capability of HADES to study flow harmonics by utilizing multi-particle azimuthal correlation techniques is discussed. Due to the high statistics of seven billion Au+Au collisions at 1.23 AGeV collected in 2012, a systematic study of higher-order flow harmonics, the differentiation between collective and non-flow effects, and as well the multi-differential (pt, rapidity, centrality) analysis is possible.
In this thesis, the flow coefficients vn of the orders n = 1 − 6 are studied for protons and light nuclei in Au+Au collisions at Ebeam = 1.23 AGeV, equivalent to a center-of-mass energy in the nucleon-nucleon system of √sNN = 2.4 GeV. The detailed multi-differential measurement is performed with the HADES experiment at SIS18/GSI. HADES, with its large acceptance, covering almost full azimuth angle, combined with its high mass-resolution and good particle-identification capability, is well equipped to study the azimuthal flow pattern not only for protons, deuterons, and tritons but also for charged pions, kaons, the φ-mesons, electrons/positrons, as well as light nuclei like helions and alphas. The high statistics of more than seven billion Au-Au collisions recorded in April/May 2012 with HADES enables for the first time the measurement of higher order flow coefficients up to the 6th harmonic. Since the Fourier coefficient of 7th and 8th order are beyond the statistical significance only an upper bound is given. The Au+Au collision system is the largest reaction system with the highest particle multiplicities, which was measured so far with HADES. A dedicated correction method for the flow measurement had to be developed to cope with the reconstruction in-efficiencies due to occupancies of the detector system. The systematical bias of the flow measurement is studied and several sources of uncertainties identified, which mainly arise from the quality selection criteria applied to the analyzed tracks, the correction procedure for reconstruction inefficiencies, the procedures for particle identification (PID) and the effects of an azimuthally non-uniform detector acceptance. The systematic point-to-point uncertainties are determined separately for each particle type (proton, deuteron and triton), the order of the flow harmonics vn, and the centrality class. Further, the validity of the results is inspected in the range of their evaluated systematic uncertainties with several consistency checks. In order to enable meaningful comparisons between experimental observations and predictions of theoretical models, the classification of events should be well defined and in sufficiently narrow intervals of impact parameter. Part of this work included the implementation of the procedure to determine the centrality and orientation of the reaction.
In the conclusion the experimental results are discussed, including various scaling properties of the flow harmonics. It is found that the ratio v4/v2 for protons and light nuclei (deuterons and tritons) at midrapidity for all centrality classes approaches values close to 0.5 at high transverse momenta, which was suggested to be indicative for an ideal hydrodynamic behaviour. A remarkable scaling is observed in the pt dependence of v2 (v4) at mid-rapidity of the three hydrogen isotopes, when dividing by their nuclear mass number A (A^2) and pt by A. This is consistent with naive expectations from nucleon coalescence, butraises the question whether this mass ordering can also be explained by a hydrodynamical-inspired approach, like the blast-wave model. The relation of v2 and v4 to the shape of the initial eccentricity of the collision system is studied. It is found that v2 is independent of centrality for all three particle species after dividing it by the averaged second order participant eccentricity v2/⟨ε2⟩. A similar scaling is shown for v4 after division by ⟨ε2⟩^2.
Many Polyakov loop models can be written in a dual formulation which is free of sign problem even when a non-vanishing baryon chemical potential is introduced in the action. Here, results of numerical simulations of a dual representation of one such effective Polyakov loop model at finite baryon density are presented. We compute various local observables such as energy density, baryon density, quark condensate and describe in details the phase diagram of the model. The regions of the first order phase transition and the crossover, as well as the line of the second order phase transition, are established. We also compute several correlation functions of the Polyakov loops.
The effect of a single site mutation of Arg-54 to methionine in Paracoccus denitrificans cytochrome c oxidase was studied using a combination of optical spectroscopy, electrochemical and rapid kinetics techniques, and time-resolved measurements of electrical membrane potential. The mutation resulted in a blue-shift of the heme a alpha-band by 15 nm and partial occupation of the low-spin heme site by heme O. Additionally, there was a marked decrease in the midpoint potential of the low-spin heme, resulting in slow reduction of this heme species. A stopped-flow investigation of the reaction with ferrocytochrome c yielded a kinetic difference spectrum resembling that of heme a(3). This observation, and the absence of transient absorbance changes at the corresponding wavelength of the low-spin heme, suggests that, in the mutant enzyme, electron transfer from Cu(A) to the binuclear center may not occur via heme a but that instead direct electron transfer to the high-spin heme is the dominating process. This was supported by charge translocation measurements where Deltapsi generation was completely inhibited in the presence of KCN. Our results thus provide an example for how the interplay between protein and cofactors can modulate the functional properties of the enzyme complex.
We show examples of the impact of the Maxwellian averaged capture cross sections determined at n_TOF over the past 20 years on AGB stellar nucleosynthesis models. In particular, we developed an automated procedure to derive MACSs from evaluated data libraries, which are subsequently used as input to stellar models computed by means of the FuNS code. In this contribution, we present a number of s-process abundances obtained using different data libraries as input to stellar models, with a focus on the role of n_TOF data.
Subensemble is a type of statistical ensemble which is the generalization of grand canonical and canonical ensembles. The subensemble acceptance method (SAM) provides general formulas to correct the cumulants of distributions in heavy-ion collisions for the global conservation of all QCD charges. The method is applicable for an arbitrary equation of state and sufficiently large systems, such as those created in central collisions of heavy ions. The new fluctuation measures insensitive to global conservation effects are presented. The main results are illustrated in the hadron resonance gas and van der Waals fluid frameworks.
Present nuclear reaction network computations for astrophysical simulations involve many different types of rates, including neutron-capture reactions of interest for the modeling of heavy-element nucleosynthesis. While for many of them we still have to rely on theoretical calculations, an increasing number of experimentally-determined cross sections have now become available. In this contribution, we present “ASTrophysical Rate and rAw data Library” (ASTRAL), a new online database for neutron-capture cross sections based on experimental results, mainly obtained through activation and timeof-flight measurements. For the evaluation process, cross sections were re-calculated starting from raw data and by considering recent changes in physical properties of the involved isotopes (e.g., half-life and γ-ray intensities). We show the current status of the database, the techniques adopted to derive the recommended Maxwellian-averaged cross sections, and future developments.
Prediction for hyper nuclei multiplicities from GSI to LHC energies from the Ultra-relativistic Quantum Molecular Dynamics (UrQMD) model combined with a final state coalescence approach is presented and compared to the thermal model. The influence of the coalescence radius on the collision energy and centrality dependence of the Λ3H/ΛΛ3H/Λ ratio is discussed.
We study the μ-μ45-T phase diagram of the 2+1-dimensional Gross-Neveu model, where μ denotes the ordinary chemical potential, μ45 the chiral chemical potential and T the temperature. We use the mean-field approximation and two different lattice regularizations with naive chiral fermions. An inhomogeneous phase at finite lattice spacing is found for one of the two regularizations. Our results suggest that there is no inhomogeneous phase in the continuum limit. We show that a chiral chemical potential is equivalent to an isospin chemical potential. Thus, all results presented in this work can also be interpreted in the context of isospin imbalance.
This article summarizes some of the current theoretical developments and the experimental status of hypernuclei in relativistic heavy-ion collisions and elementary collisions. In particular, the most recent results of hyperhydrogen of mass A = 3 and 4 are discussed. The highlight at SQM2022 in this perspective was the discovery of the anti-hyperhydrogen-4 by the STAR Collaboration, in a large data set consisting of different collision systems. Furthermore, the production yields of hyperhydrogen-4 and hyperhelium-4 from the STAR Collaboration can be described nicely by the thermal model when the excited states of these hypernuclei are taken into account. In contrast, the production measurements in small systems (pp and p–Pb) from the ALICE Collaboration tends to favour the coalescence model over the thermal description. New measurements from STAR, ALICE and HADES Collaborations of the properties, e.g. lifetime, of A = 3 and 4 hypernuclei give similar results of these properties. Also the anti-hyperhydrogen-4 lifetime is in rather good agreement with previous measurements. Interestingly, the new STAR measurement on the R3 value, that is connected to the branching ratio, points to a Λ separation energy that is below 100 keV but definitely consistent with the value of 130 keV assumed since the 70s.
Asymptotic giant branch (AGB) stars are responsible for the production of the main component of the solar s-process distribution. Despite enormous progress in the theoretical modeling of these objects over the last few decades, many uncertainties remain. The still-unknown mechanism leading to the production of 13C neutron source is one example. The nucleosynthetic signature of AGB stars can be examined in a number of stellar sources, from spectroscopic observations of intrinsic and extrinsic stars to the heavy-element isotopic composition of presolar grains found in meteorites. The wealth of available observational data allows for constraining the processes occurring in AGB interiors. In this view, we discuss recent results from new AGB models including the effects of mixing triggered by magnetic fields, and show comparisons of the related s-process nucleosynthesis with available observations.
Lattice QCD and functional methods are making significant progress in constraining the QCD phase diagram. As an important milestone, the chiral phase transition with massless u, d-quarks at zero density is now understood to be of second order for all strange quark masses, and a smooth crossover as soon as mu,d, ≠ 0. Together with information on fluctuations and refined reweighted simulations, this bounds a possible critical point to be at µB/T ≲3. On the other hand, an approximately chiral-spin symmetric temperature window has been discovered above the chiral crossover, Tch<T ≳3Tch, with distinct correlator multiplet patterns and a pion spectral function suggesting resonance-like degrees of freedom, which dissolve graduallly with temperature.
The phase diagram of the (1+1)-dimensional Gross-Neveu model is reanalyzed for (non-)zero chemical potential and (non-)zero temperature within the mean-field approximation. By investigating the momentum dependence of the bosonic two-point function, the well-known second-order phase transition from the Z2 symmetric phase to the so-called inhomogeneous phase is detected. In the latter phase the chiral condensate is periodically varying in space and translational invariance is broken. This work is a proof of concept study that confirms that it is possible to correctly localize second-order phase transition lines between phases without condensation and phases of spatially inhomogeneous condensation via a stability analysis of the homogeneous phase. To complement other works relying on this technique, the stability analysis is explained in detail and its limitations and successes are discussed in context of the Gross-Neveu model. Additionally, we present explicit results for the bosonic wave-function renormalization in the mean-field approximation, which is extracted analytically from the bosonic two-point function. We find regions -- a so-called moat regime -- where the wave function renormalization is negative accompanying the inhomogeneous phase as expected.
The phase diagram of the (1+1)-dimensional Gross-Neveu model is reanalyzed for (non-)zero chemical potential and (non-)zero temperature within the mean-field approximation. By investigating the momentum dependence of the bosonic two-point function, the well-known second-order phase transition from the Z2 symmetric phase to the so-called inhomogeneous phase is detected. In the latter phase the chiral condensate is periodically varying in space and translational invariance is broken. This work is a proof of concept study that confirms that it is possible to correctly localize second-order phase transition lines between phases without condensation and phases of spatially inhomogeneous condensation via a stability analysis of the homogeneous phase. To complement other works relying on this technique, the stability analysis is explained in detail and its limitations and successes are discussed in context of the Gross-Neveu model. Additionally, we present explicit results for the bosonic wave-function renormalization in the mean-field approximation, which is extracted analytically from the bosonic two-point function. We find regions -- a so-called moat regime -- where the wave function renormalization is negative accompanying the inhomogeneous phase as expected.
The phase diagram of the (1+1)-dimensional Gross-Neveu model is reanalyzed for (non-)zero chemical potential and (non-)zero temperature within the mean-field approximation. By investigating the momentum dependence of the bosonic two-point function, the well-known second-order phase transition from the Z2 symmetric phase to the so-called inhomogeneous phase is detected. In the latter phase the chiral condensate is periodically varying in space and translational invariance is broken. This work is a proof of concept study that confirms that it is possible to correctly localize second-order phase transition lines between phases without condensation and phases of spatially inhomogeneous condensation via a stability analysis of the homogeneous phase. To complement other works relying on this technique, the stability analysis is explained in detail and its limitations and successes are discussed in context of the Gross-Neveu model. Additionally, we present explicit results for the bosonic wave-function renormalization in the mean-field approximation, which is extracted analytically from the bosonic two-point function. We find regions -- a so-called moat regime -- where the wave function renormalization is negative accompanying the inhomogeneous phase as expected.
We prove that the projectivized strata of differentials are not contained in pointed Brill-Noether divisors, with only a few exceptions. For a generic element in a stratum of differentials, we show that many of the associated pointed Brill-Noether loci are of expected dimension. We use our results to study the Auel-Haburcak Conjecture: We obtain new non-containments between maximal Brill-Noether loci in Mg. Our results regarding quadratic differentials imply that the quadratic strata in genus 6 are uniruled.
We study the μ-μ45-T phase diagram of the 2+1-dimensional Gross-Neveu model, where μ denotes the ordinary chemical potential, μ45 the chiral chemical potential and T the temperature. We use the mean-field approximation and two different lattice regularizations with naive chiral fermions. An inhomogeneous phase at finite lattice spacing is found for one of the two regularizations. Our results suggest that there is no inhomogeneous phase in the continuum limit. We show that a chiral chemical potential is equivalent to an isospin chemical potential. Thus, all results presented in this work can also be interpreted in the context of isospin imbalance.
We explore the phase structure of the 1+1 dimensional Gross-Neveu model at finite number of fermion flavors using lattice field theory. Besides a chirally symmetric phase and a homogeneously broken phase we find evidence for the existence of an inhomogeneous phase, where the condensate is a spatially oscillating function. Our numerical results include a crude μ-T phase diagram.
We explore the phase structure of the 1+1 dimensional Gross-Neveu model at finite number of fermion flavors using lattice field theory. Besides a chirally symmetric phase and a homogeneously broken phase we find evidence for the existence of an inhomogeneous phase, where the condensate is a spatially oscillating function. Our numerical results include a crude μ-T phase diagram.
In this work, the phase diagram of the 2+1-dimensional Gross-Neveu model is investigated with baryon chemical potential as well as chiral chemical potential in the mean-field approximation. We study the theory using two lattice discretizations, which are both based on naive fermions. An inhomogeneous chiral phase is observed only for one of the two discretizations. Our results suggest that this phase disappears in the continuum limit.
In this work, the phase diagram of the 2+1-dimensional Gross-Neveu model is investigated with baryon chemical potential as well as chiral chemical potential in the mean-field approximation. We study the theory using two lattice discretizations, which are both based on naive fermions. An inhomogeneous chiral phase is observed only for one of the two discretizations. Our results suggest that this phase disappears in the continuum limit.
In this work we study the 3+1-dimensional Nambu-Jona-Lasinio (NJL) model in the mean field-approximation. We carry out calculations using five different regularization schemes (two continuum and three lattice regularization schemes) with particular focus on inhomogeneous phases and condensates. The regularization schemes lead to drastically different inhomogeneous regions. We provide evidence that inhomogeneous condensates appear for all regularization schemes almost exclusively at values of the chemical potential and with wave numbers, which are of the order of or even larger than the corresponding regulators. This can be interpreted as indication that inhomogeneous phases in the 3+1-dimensional NJL model are rather artifacts of the regularization and not a consequence of the NJL Lagrangian and its symmetries.
In this work, inhomogeneous chiral phases are studied in a variety of Four-Fermion and Yukawa models in 2+1 dimensions at zero and non-zero temperature and chemical potentials. Employing the mean-field approximation, we do not find indications for an inhomogeneous phase in any of the studied models. We show that the homogeneous phases are stable against inhomogeneous perturbations. At zero temperature, full analytic results are presented.
We continue previous investigations of the (inhomogeneous) phase structure of the Gross-Neveu model in a noninteger number of spatial dimensions (1≤d<3) in the limit of an infinite number of fermion species (N→∞) at (non)zero chemical potential μ. In this work, we extend the analysis from zero to nonzero temperature T.
The phase diagram of the Gross-Neveu model in 1≤d<3 spatial dimensions is well known under the assumption of spatially homogeneous condensation with both a symmetry broken and a symmetric phase present for all spatial dimensions. In d=1 one additionally finds an inhomogeneous phase, where the order parameter, the condensate, is varying in space. Similarly, phases of spatially varying condensates are also found in the Gross-Neveu model in d=2 and d=3, as long as the theory is not fully renormalized, i.e., in the presence of a regulator. For d=2, one observes that the inhomogeneous phase vanishes, when the regulator is properly removed (which is not possible for d=3 without introducing additional parameters).
In the present work, we use the stability analysis of the symmetric phase to study the presence (for 1≤d<2) and absence (for 2≤d<3) of these inhomogeneous phases and the related moat regimes in the fully renormalized Gross-Neveu model in the μ,T-plane. We also discuss the relation between "the number of spatial dimensions" and "studying the model with a finite regulator" as well as the possible consequences for the limit d→3.
Inhomogeneous condensation in the Gross-Neveu model in noninteger spatial dimensions 1 ≤ d < 3
(2023)
The Gross-Neveu model in the N→∞ approximation in d=1 spatial dimensions exhibits a chiral inhomogeneous phase (IP), where the chiral condensate has a spatial dependence that spontaneously breaks translational invariance and the Z2 chiral symmetry. This phase is absent in d=2, while in d=3 its existence and extent strongly depends on the regularization and the value of the finite regulator. This work connects these three results smoothly by extending the analysis to non-integer spatial dimensions 1≤d<3, where the model is fully renormalizable. To this end, we adapt the stability analysis, which probes the stability of the homogeneous ground state under inhomogeneous perturbations, to non-integer spatial dimensions. We find that the IP is present for all d<2 and vanishes exactly at d=2. Moreover, we find no instability towards an IP for 2≤d<3, which suggests that the IP in d=3 is solely generated by the presence of a regulator.
We show the absence of an instability of homogeneous (chiral) condensates against spatially inhomogeneous perturbations for various 2+1-dimensional four-fermion and Yukawa models. All models are studied at non-zero baryon chemical potential, while some of them are also subjected to chiral and isospin chemical potential. The considered theories contain up to 16 Lorentz-(pseudo)scalar fermionic interaction channels. We prove the stability of homogeneous condensates by analyzing the bosonic two-point function, which can be expressed in a purely analytical form at zero temperature. Our analysis is presented in a general manner for all of the different discussed models. We argue that the absence of an inhomogeneous chiral phase (where the chiral condensate is spatially non-uniform) follows from this lack of instability. Furthermore, the existence of a moat regime, where the bosonic wave function renormalization is negative, in these models is ruled out.
We show the absence of an instability of homogeneous (chiral) condensates against spatially inhomogeneous perturbations for various 2+1-dimensional four-fermion and Yukawa models. All models are studied at non-zero baryon chemical potential, while some of them are also subjected to chiral and isospin chemical potential. The considered theories contain up to 16 Lorentz-(pseudo)scalar fermionic interaction channels. We prove the stability of homogeneous condensates by analyzing the bosonic two-point function, which can be expressed in a purely analytical form at zero temperature. Our analysis is presented in a general manner for all of the different discussed models. We argue that the absence of an inhomogeneous chiral phase (where the chiral condensate is spatially non-uniform) follows from this lack of instability. Furthermore, the existence of a moat regime, where the bosonic wave function renormalization is negative, in these models is ruled out.
Inhomogeneous condensation in the Gross-Neveu model in non-integer spatial dimensions 1 ≤ d < 3
(2023)
he Gross-Neveu model in the N→∞ approximation in d=1 spatial dimensions exhibits a chiral inhomogeneous phase (IP), where the chiral condensate has a spatial dependence that spontaneously breaks translational invariance and the Z2 chiral symmetry. This phase is absent in d=2, while in d=3 its existence and extent strongly depends on the regularization and the value of the finite regulator. This work connects these three results smoothly by extending the analysis to non-integer spatial dimensions 1≤d<3, where the model is fully renormalizable. To this end, we adapt the stability analysis, which probes the stability of the homogeneous ground state under inhomogeneous perturbations, to non-integer spatial dimensions. We find that the IP is present for all d<2 and vanishes exactly at d=2. Moreover, we find no instability towards an IP for 2≤d<3, which suggests that the IP in d=3 is solely generated by the presence of a regulator.
We show the absence of an instability of homogeneous (chiral) condensates against spatially inhomogeneous perturbations for various (2+1)-dimensional four-fermion and Yukawa models. All models are studied at nonzero baryon chemical potential, while some of them are also subjected to chiral and isospin chemical potential. The considered theories contain up to 16 Lorentz-(pseudo)scalar fermionic interaction channels. We prove the stability of homogeneous condensates by analyzing the bosonic two-point function, which can be expressed in a purely analytical form at zero temperature. Our analysis is presented in a general manner for all of the different discussed models. We argue that the absence of an inhomogeneous chiral phase (where the chiral condensate is spatially nonuniform) follows from this lack of instability. Furthermore, the existence of a moat regime, where the bosonic wave-function renormalization is negative, in these models is ruled out.
Inhomogeneous condensation in the Gross-Neveu model in noninteger spatial dimensions 1 ≤ d < 3
(2023)
The Gross-Neveu model in the N→∞ limit in d=1 spatial dimensions exhibits a chiral inhomogeneous phase (IP), where the chiral condensate has a spatial dependence that spontaneously breaks translational invariance and the Z2 chiral symmetry. This phase is absent in d=2, while in d=3 its existence and extent strongly depends on the regularization and the value of the finite regulator. This work connects these three results smoothly by extending the analysis to noninteger spatial dimensions 1≤d<3, where the model is fully renormalizable. To this end, we adapt the stability analysis, which probes the stability of the homogeneous ground state under inhomogeneous perturbations, to noninteger spatial dimensions. We find that the IP is present for all d<2 and vanishes exactly at d=2. Moreover, we find no instability toward an IP for 2≤d<3, which suggests that the IP in d=3 is solely generated by the presence of a regulator.
Inhomogeneous phases in the Gross-Neveu model in 1 + 1 dimensions at finite number of flavors
(2020)
We explore the thermodynamics of the 1+1-dimensional Gross-Neveu (GN) model at a finite number of fermion flavors Nf, finite temperature, and finite chemical potential using lattice field theory. In the limit Nf→∞ the model has been solved analytically in the continuum. In this limit three phases exist: a massive phase, in which a homogeneous chiral condensate breaks chiral symmetry spontaneously; a massless symmetric phase with vanishing condensate; and most interestingly an inhomogeneous phase with a condensate, which oscillates in the spatial direction. In the present work we use chiral lattice fermions (naive fermions and SLAC fermions) to simulate the GN model with 2, 8, and 16 flavors. The results obtained with both discretizations are in agreement. Similarly as for Nf→∞ we find three distinct regimes in the phase diagram, characterized by a qualitatively different behavior of the two-point function of the condensate field. For Nf=8 we map out the phase diagram in detail and obtain an inhomogeneous region smaller as in the limit Nf→∞, where quantum fluctuations are suppressed. We also comment on the existence or absence of Goldstone bosons related to the breaking of translation invariance in 1+1 dimensions.
The traffic AAA-ATPase PilF is essential for pilus biogenesis and natural transformation of Thermus thermophilus HB27. Recently, we showed that PilF forms hexameric complexes containing six zinc atoms coordinated by conserved tetracysteine motifs. Here we report that zinc binding is essential for complex stability. However, zinc binding is neither required for pilus biogenesis nor natural transformation. A number of the mutants did not exhibit any pili during growth at 64 °C but still were transformable. This leads to the conclusion that type 4 pili and the DNA translocator are distinct systems. At lower growth temperatures (55 °C) the zinc-depleted multiple cysteine mutants were hyperpiliated but defective in pilus-mediated twitching motility. This provides evidence that zinc binding is essential for the role of PilF in pilus dynamics. Moreover, we found that zinc binding is essential for complex stability but dispensable for ATPase activity. In contrast to many polymerization ATPases from mesophilic bacteria, ATP binding is not required for PilF complex formation; however, it significantly increases complex stability. These data suggest that zinc and ATP binding increase complex stability that is important for functionality of PilF under extreme environmental conditions.
Understanding the physics of strongly correlated electronic systems has been a central issue in condensed matter physics for decades. In transition metal oxides, strong correlations characteristic of narrow d bands are at the origin of remarkable properties such as the opening of Mott gap, enhanced effective mass, and anomalous vibronic coupling, to mention a few. SrVO3 with V4+ in a 3d1 electronic configuration is the simplest example of a 3D correlated metallic electronic system. Here, the authors' focus on the observation of a (roughly) quadratic temperature dependence of the inverse electron mobility of this seemingly simple system, which is an intriguing property shared by other metallic oxides. The systematic analysis of electronic transport in SrVO3 thin films discloses the limitations of the simplest picture of e–e correlations in a Fermi liquid (FL); instead, it is shown show that the quasi-2D topology of the Fermi surface (FS) and a strong electron–phonon coupling, contributing to dress carriers with a phonon cloud, play a pivotal role on the reported electron spectroscopic, optical, thermodynamic, and transport data. The picture that emerges is not restricted to SrVO3 but can be shared with other 3d and 4d metallic oxides.
This thesis investigates exotic phases within effective models for strongly interacting matter.
The focus lies on the chiral inhomogeneous phase (IP) that is characterized by a spontaneous breaking of translational symmetry and the moat regime, which is a precursor phenomenon exhibiting a non-trivial mesonic dispersion relation.
These phenomena are expected to occur at non-zero baryon densities, which is a parameter region that is mostly non-accessible to first-principle investigations of Quantum chromodynamics (QCD).
As an alternative approach, we consider the Gross-Neveu (GN) and Nambu-Jona-Lasinio (NJL) model within the mean-field approximation, which can be regarded as effective models for QCD.
We focus on two aspects of the moat regime and the IP in these models.
First, we investigate the influence of the employed regularization scheme in the (3+1)-dimensional NJL model, which is nonrenormalizable, i.e., the regulator cannot be removed.
We find that the moat regime is a robust feature under change of regularization scheme, while the IP is sensitive to the specific choice of scheme.
This suggests that the moat regime is a universal feature of the phase diagram of the NJL model, while the IP might only be an artifact of the employed regulator.
Second, we study the influence of the number of spatial dimensions on the emergence of the IP.
To this end, we investigate the GN model in noninteger spatial dimensions d.
We find that the IP and the moat regime are present for d < 2, while they are absent for d > 2.
This demonstrates the central role of the dimensionality of spacetime and illustrates the connection of previously obtained results in this model in integer number of spatial dimensions.
Moreover, this suggests that the occurrence of these phenomena in three spatial dimensions is solely caused by the finite regulator.
In summary, this thesis contributes to advancing our understanding of the phase structure of QCD, particularly regarding the existence and characteristics of inhomogeneous phases and the moat regime.
Even though the investigations are performed within effective models, they provide valuable insight into the aspects that are crucial for the formation of an inhomogeneous chiral condensate in fermionic theories.
By combining two unique facilities at the Gesellschaft fuer Schwerionenforschung (GSI), the Fragment Separator (FRS) and the Experimental Storage Ring (ESR), the first direct measurement of a proton capture reaction of stored radioactive isotopes was accomplished. The combination of well-defined ion energy, an ultra-thin internal gas target, and the ability to adjust the beam energy in the storage ring enables precise, energy-differentiated measurements of the (p,gamma) cross sections. The new setup provides a sensitive method for measuring (p,gamma) reactions relevant for nucleosynthesis processes in supernovae, which are among the most violent explosions in the universe and are not yet well understood. The cross sections of the 118Te(p,gamma) and 124Xe(p,gamma) reactions were measured
at energies of astrophysical interest. The heavy ions were stored with energies of 6 MeV/nucleon and 7 MeV/nucleon and interacted with a hydrogen gas-jet target.
The produced proton-capture products were detected with a double-sided silicon strip detector. The radiative recombination process of the fully stripped ions and electrons from the hydrogen target was used as a luminosity monitor.
Additionally, post-processing nucleosynthesis simulations within the NuGrid [1] research platform have been performed. The impact of the new experimental results on the p-process nucleosynthesis around 124Xe and 118Te in a core-collapse supernova was investigated. The successful measurement of the proton capture cross sections of radioactive isotopes rises the motivation to proceed with experiments in lower energy regions.
[1] M. Pignatari and F. Herwig, “The nugrid research platform: A comprehensive simulation approach for nuclear astrophysics,” Nuclear Physics News, vol. 22, no. 4, pp. 18–23, 2012.
Ion formation from alkali halide solids caused by the irradiation of high power (some 108 W/ cm2) pulsed lasers is investigated by means of time-of-flight mass spectrometry (LAMMA®). It is shown that the ions are formed directly from the solid state, several uppermost atomic layers being involved; gas phase interactions are negligible. The ion formation rates, however, are in-compatible with the assumption of a quasiequilibrium phase transition, but should be explained in terms of non-adiabatic rate processes discussed in some detail. The light absorption of the transparent halide crystals is assumed to be initiated by multiphoton absorption - free electron production; the further energy transfer being maintained by rapid polaron-Joule-heating. The data are compatible with this model.
Vertebrate life depends on renal function to filter excess fluid and remove low-molecular-weight waste products. An essential component of the kidney filtration barrier is the slit diaphragm (SD), a specialized cell-cell junction between podocytes. Although the constituents of the SD are largely known, its molecular organization remains elusive. Here, we use super-resolution correlative light and electron microscopy to quantify a linear rate of reduction in albumin concentration across the filtration barrier under no-flow conditions. Next, we use cryo-electron tomography of vitreous lamellae from high-pressure frozen native glomeruli to analyze the molecular architecture of the SD. The resulting densities resemble a fishnet pattern. Fitting of Nephrin and Neph1, the main constituents of the SD, results in a complex interaction pattern with multiple contact sites between the molecules. Using molecular dynamics simulations, we construct a blueprint of the SD that explains its molecular architecture. Our architectural understanding of the SD reconciles previous findings and provides a mechanistic framework for the development of novel therapies to treat kidney dysfunction.
Vertebrate life depends on renal function to filter excess fluid and remove low-molecular-weight waste products. An essential component of the kidney filtration barrier is the slit diaphragm (SD), a specialized cell-cell junction between podocytes. Although the constituents of the SD are largely known, its molecular organization remains elusive. Here, we use super-resolution correlative light and electron microscopy to quantify a linear rate of reduction in albumin concentration across the filtration barrier. Next, we use cryo-electron tomography of vitreous lamellae from high-pressure frozen native glomeruli to analyze the molecular architecture of the SD. The resulting densities resemble a fishnet pattern. Fitting of Nephrin and Neph1, the main constituents of the SD, results in a complex interaction pattern with multiple contact sites between the molecules. Using molecular dynamics flexible fitting, we construct a blueprint of the SD, where we describe all interactions. Our architectural understanding of the SD reconciles previous findings and provides a mechanistic framework for the development of novel therapies to treat kidney dysfunction.
In this thesis, we present a detailed consideration of both qualitative and quantitative properties of static spherically symmetric solutions of the Einstein equations with self-interacting scalar fields. Our focus is on solutions with naked singularities. We study the qualitative properties of the solutions of the Einstein equations with real static self-interacting $N$ scalar fields, making some assumptions on self-interaction. We provide a rigorous proof that the corresponding solutions will be regular up to $r=0$. Furthermore, we find the rigorous form of asymptotic solutions near the singularity and at spatial infinity. We construct some examples of spherical-like naked singularities at $r=r_s\neq0$ in curvature coordinates.
We analyze the stability of the previously considered solutions against odd-parity gravitational perturbations and also examine the fundamental quasi-normal modes spectra. For the general class of the self-interaction potential, we demonstrate well-posedness of the initial problem and stability for positively defined potentials. As an example, we numerically study the case of the scalar field with power-law self-interaction potential and find the fundamental quasi-normal modes frequencies. We demonstrate that they differ from the standard Schwarzschild black hole case.
We study in detail the motion of particles in the vicinity of previously considered solutions. Mainly, we are interested in considering properties of the distribution of stable circular orbits around the corresponding configurations and images of the accretion disk for a distant observer. For all cases, we find possible types of stable circular orbit distributions and domains of parameters where they are realized.
We also demonstrate that the presence of self-interaction can lead to a new type of circular orbit distributions, which is absent in the linear massless scalar field case. We build Keplerian disk images in the plane of a distant observer and demonstrate the possibility to mimic the shadows of black holes.
An elementary derivation of the optical potential for high energies is given. For the determination of the optical potential only the knowledge of the scattering amplitude for free nucleons and of the autocorrelation function for density fluctuations is necessary. The numerical calculation of the real- and imaginary part of the optical potential was performed using the Tabakin potential.
The convergence of the eigenchannel (EK) and R-matrix (RM) theories - depending on their free parameters - is numerically investigated by comparing with a simple, analytically solvable model. The comparison shows that the results of the EK-theory are in general closer to the exact solution than those of the RM-theory. Especially in regions of sharp resonances the dependence of the expansion of the wave functions on the interaction radius ac and on the boundary condition Bc is very strong in the RM-theory and one needs very many levels to achieve good results.
Bei der UV-Bestrahlung (2537 Å) des Zn-Insulins beobachtet man für kleinere Dosen (bis 10 Einstein/Mol) eine direkte Korrelation zwischen der Inaktivierung und der Photoreduktion einer der drei Disulfidbrücken. Mit steigender Dosis wird die Quantenausbeute für die Reduktion der Disulfidbrücken (Bildung von SH-Gruppen) sehr klein, dagegen führen dann andere Prozesse zunehmend zur photochemischen Zerstörung der Disulfidbrücken. Für größere Strahlendosen (über 100 Einstein/Mol) ergibt die Extrapolation, daß für die völlige Inaktivierung des Insulins sämtliche drei Cystinreste zerstört werden müssen. Von den übrigen Aminosäuren wird durch Dosen um 100 Einstein/Mol nur der Tyrosin-Anteil signifikant vermindert. Mit steigender Strahlendosis ändert sich — wahrscheinlich infolge von Konformationsänderungen der Polypeptidketten — die Photosensibilität der Aminosäuren.
The anion transport protein of the human erythrocyte membrane, band 3, was solubilized and purified in solutions of the non-ionic detergent nonaethylene glycol lauryl ether and then reconstituted in spherical egg phosphatidylcholine bilayers as described earlier (U. Scheuring, K. Kollewe, W. Haase, and D. Schubert, J. Membrane Biol. 90, 123-135 (1986)). The resulting paucilamellar proteoliposom es of average diameter 70 nm were transformed into smaller vesicles by French press treatment and fractionated according to size by gel filtration. The smallest protein-containing liposomes obtained had diameters around 32 nm; still smaller vesicles were free of protein. All proteoliposome samples studied showed a rapid sulfate efflux which was sensitive to specific inhibitors of band 3-mediated anion exchange. In addition, the orientation of the transport protein in the vesicle membranes was found to be “right-side-out” in all samples. This suggests that the orientation of the protein in the vesicle membranes is dictated by the shape of the protein’s intramembrane domain and that this domain has the form of a truncated cone or pyramid.
Motivated by recent reports of a quantum-disordered ground state in the triangular lattice compound NaRuO2, we derive a jeff = 1/2 magnetic model for this system by means of first-principles calculations. The pseudospin Hamiltonian is dominated by bond-dependent off-diagonal Γ interactions, complemented by a ferromagnetic Heisenberg exchange and a notably antiferromagnetic Kitaev term. In addition to bilinear interactions, we find a sizable four-spin ring exchange contribution with a strongly anisotropic character, which has been so far overlooked when modeling Kitaev materials. The analysis of the magnetic model, based on the minimization of the classical energy and exact diagonalization of the quantum Hamiltonian, points toward the existence of a rather robust easy-plane ferromagnetic order, which cannot be easily destabilized by physically relevant perturbations.
Continued advances in quantum technologies rely on producing nanometer-scale wires. Although several state-of-the-art nanolithographic technologies and bottom-up synthesis processes have been used to engineer these wires, critical challenges remain in growing uniform atomic-scale crystalline wires and constructing their network structures. Here, we discover a simple method to fabricate atomic-scale wires with various arrangements, including stripes, X-junctions, Y-junctions, and nanorings. Single-crystalline atomic-scale wires of a Mott insulator, whose bandgap is comparable to those of wide-gap semiconductors, are spontaneously grown on graphite substrates by pulsed-laser deposition. These wires are one unit cell thick and have an exact width of two and four unit cells (1.4 and 2.8 nm) and lengths up to a few micrometers. We show that the nonequilibrium reaction-diffusion processes may play an essential role in atomic pattern formation. Our findings offer a previously unknown perspective on the nonequilibrium self-organization phenomena on an atomic scale, paving a unique way for the quantum architecture of nano-network.
Electronic and magnetic properties of the RuX3 (X=Cl, Br, I) family: two siblings - and a cousin?
(2022)
Motivated by reports of metallic behavior in the recently synthesized RuI3, in contrast to the Mott-insulating nature of the actively discussed α-RuCl3, as well as RuBr3, we present a detailed comparative analysis of the electronic and magnetic properties of this family of trihalides. Using a combination of first-principles calculations and effective-model considerations, we conclude that RuI3, similarly to the other two members, is most probably on the verge of a Mott insulator, but with much smaller magnetic moments and strong magnetic frustration. We predict the ideal pristine crystal of RuI3 to have a nearly vanishing conventional nearest-neighbor Heisenberg interaction and to be a quantum spin liquid candidate of a possibly different kind than the Kitaev spin liquid. In order to understand the apparent contradiction to the reported resistivity ρ, we analyze the experimental evidence for all three compounds and propose a scenario for the observed metallicity in existing samples of RuI3. Furthermore, for the Mott insulator RuBr3, we obtain a magnetic Hamiltonian of a similar form to that in the much-discussed α-RuCl3 and show that this Hamiltonian is in agreement with experimental evidence in RuBr3.
Due to the small photon momentum, optical spectroscopy commonly probes magnetic excitations only at the center of the Brillouin zone; however, there are ways to override this restriction. In case of the distorted kagome quantum magnet Y-kapellasite, Y3Cu9(OH)19Cl8, under scrutiny here, the spin (magnon) density of states (SDOS) can be accessed over the entire Brillouin zone through three-center magnon excitations. This mechanism is aided by the three different magnetic sublattices and strong short-range correlations in the distorted kagome lattice. The results of THz time-domain experiments agree remarkably well with linear spin-wave theory (LSWT). Relaxing the conventional zone-center constraint of photons gives a new aspect to probe magnetism in matter.
Previous calculations of the shear viscosity to entropy density ratio in the hadron gas have failed to reach a consensus, with η/s predictions differing by almost an order of magnitude. This work addresses and solves this discrepancy by providing an independent extraction of η/s using the newly-developed SMASH (Simulating Many Accelerated Strongly-interacting Hadrons) transport code and the Green-Kubo formalism. We compare the results from SMASH with numerical solutions of the Boltzmann equation for various systems using the Chapman-Enskog expansion as well as previous results in the literature. Substantial deviations of the coefficient are found between transport approaches mainly based on resonance propagation with finite lifetime (such as SMASH) and other (semi-analytical) approaches with energy-dependent cross-sections, where interactions do not introduce a timescale other than the inverse scattering rate. Our conclusion is that long- lived resonances strongly affect the transport properties of the system, resulting in significant differences in η/s with respect to other approaches where binary collisions dominate. We argue that the relaxation time of the system —which characterizes the shear viscosity— is determined by the interplay between the mean- free time and the lifetime of resonances. We finally show how an artificial shortening of the resonance lifetimes or the addition of a background elastic cross section nicely interpolate between the two discrepant results.
We present an analysis of the anisotropic flow harmonics in Pb+Pb collisions at beam momenta of 30A GeV/c collected by the NA61/SHINE experiment in the year 2016. Directed and elliptic flow coefficients are measured relative to the spectator plane estimated with the Projectile Spectators Detector (PSD). The flow coefficients are reported as a function of transverse momentum in different classes of collision centrality. The results are compared with a new analysis of the NA49 data for Pb+Pb collisions at 40A GeV using forward calorimeters (VCal and RCal) for event plane estimation.
In this proceeding, we study the dynamical evolution of the sigma field within the framework of Langevin dynamics. We find that, as the system evolves in the critical regime, the magnitudes and signs of the cumulants of sigma field, C3 and C4, can be dramatically different from the equilibrated ones due to the memory effects near Tc. For the dynamical evolution across the 1st order phase transition boundary, the supercooling effect leads the sigma field to be widely distributed in the thermodynamical potential, which largely enhances the cumulants C3, C4, correspondingly.
Starting from IP-Glasma initial conditions, we investigate the effects of bulk pressure on low mass dilepton production at the Relativistic Heavy Ion Collider (RHIC) and the Large Hadron Collider (LHC) energies. Though thermal dilepton is affected by the presence of both bulk and shear viscosity, whether or not these effects can be measured depends on the dilepton “cocktail” contribution to the the low mass dilepton . Combining the thermal and “cocktail” dileptons, the effects of bulk viscosity on total dilepton is investigated.
The relativistic method of moments is one of the most successful approaches to extract second order viscous hydrodynamics from a kinetic underlying background. The equations can be systematically improved to higher order, and they have already shown a fast convergence to the kinetic results. In order to generalize the method we introduced long range effects in the form of effective (medium dependent) masses and gauge (coherent) fields. The most straightforward generalization of the hydrodynamic expansion is problematic at higher order. Instead of introducing an additional set of approximations, we propose to rewrite the series in terms of moments resumming the contributions of infinite non-hydrodynamics modes. The resulting equations are are consistent with hydrodynamics and well defined at all order. We tested the new approximation against the exact solutions of the Maxwell-Boltzmann-Vlasov equations in (0 + 1)-dimensions, finding a fast and stable convergence to the exact results.
The new heavy ion superconducting continuous wave HElmholtz LInear ACcelerator (HELIAC) is under construction at GSI. A normal conducting injector, comprising an ECR ion source, an RFQ and a DTL, is recently in development. The new Interdigital H-mode DTL, presented in this paper, accelerates the heavy ion beam from 300 to 1400 keV/u, applying an Alternating Phase Focusing (APF) beam dynamics scheme. This APF section, consisting of two separately controlled tanks, has to provide for stable routine operation with assistance of dedicated beam diagnostics devices in the Intertank section. The installed quadrupole lenses and beam steerers installed there ensure full transmission in a wide range of input beam parameters.
The upcoming commissioning of the superconducting (SC) continuous wave Helmholtz linear accelerators first of series cryomodule is going to demand precise alignment of the four internal SC cavities and two SC solenoids. For optimal results, a beam-based alignment method is used to reduce the misalignment of the whole cryomodule, as well as its individual components. A symmetric beam of low transverse emittance is required for this method, which is to be formed by a collimation system. It consists of two separate plates with milled slits, aligned in the horizontal and vertical direction. The collimation system and alignment measurements are proposed, investigated, and realized. The complete setup of this system and its integration into the existing environment at the GSI High Charge State Injector are presented, as well as the results of the recent reference measurements.
We study in detail the nuclear aspects of a neutron-star merger in which deconfinement to quark matter takes place. For this purpose, we make use of the Chiral Mean Field (CMF) model, an effective relativistic model that includes self-consistent chiral symmetry restoration and deconfinement to quark matter and, for this reason, predicts the existence of different degrees of freedom depending on the local density/chemical potential and temperature. We then use the out-of-chemical-equilibrium finite-temperature CMF equation of state in full general-relativistic simulations to analyze which regions of different QCD phase diagrams are probed and which conditions, such as strangeness and entropy, are generated when a strong first-order phase transition appears. We also investigate the amount of electrons present in different stages of the merger and discuss how far from chemical equilibrium they can be and, finally, draw some comparisons with matter created in supernova explosions and heavy-ion collisions.
High shares of intermittent renewable power generation in a European electricity system will require flexible backup power generation on the dominant diurnal, synoptic, and seasonal weather timescales. The same three timescales are already covered by today’s dispatchable electricity generation facilities, which are able to follow the typical load variations on the intra-day, intra-week, and seasonal timescales. This work aims to quantify the changing demand for those three backup flexibility classes in emerging large-scale electricity systems, as they transform from low to high shares of variable renewable power generation. A weather-driven modelling is used, which aggregates eight years of wind and solar power generation data as well as load data over Germany and Europe, and splits the backup system required to cover the residual load into three flexibility classes distinguished by their respective maximum rates of change of power output. This modelling shows that the slowly flexible backup system is dominant at low renewable shares, but its optimized capacity decreases and drops close to zero once the average renewable power generation exceeds 50% of the mean load. The medium flexible backup capacities increase for modest renewable shares, peak at around a 40% renewable share, and then continuously decrease to almost zero once the average renewable power generation becomes larger than 100% of the mean load. The dispatch capacity of the highly flexible backup system becomes dominant for renewable shares beyond 50%, and reach their maximum around a 70% renewable share. For renewable shares above 70% the highly flexible backup capacity in Germany remains at its maximum, whereas it decreases again for Europe. This indicates that for highly renewable large-scale electricity systems the total required backup capacity can only be reduced if countries share their excess generation and backup power.
The transition to a future electricity system based primarily on wind and solar PV is examined for all regions in the contiguous US. We present optimized pathways for the build-up of wind and solar power for least backup energy needs as well as for least cost obtained with a simplified, lightweight model based on long-term high resolution weather-determined generation data. In the absence of storage, the pathway which achieves the best match of generation and load, thus resulting in the least backup energy requirements, generally favors a combination of both technologies, with a wind/solar PV (photovoltaics) energy mix of about 80/20 in a fully renewable scenario. The least cost development is seen to start with 100% of the technology with the lowest average generation costs first, but with increasing renewable installations, economically unfavorable excess generation pushes it toward the minimal backup pathway. Surplus generation and the entailed costs can be reduced significantly by combining wind and solar power, and/or absorbing excess generation, for example with storage or transmission, or by coupling the electricity system to other energy sectors.
In this thesis, the early time dynamics in a heavy ion collision of Pb-Nuclei at LHC center-of-mass energies of 5 TeV is studied. Right after the collision the system is out-of-equilibrium and essentially gluon dominated, with their density saturating at a specific momentum scale Q_s. Based on a separation of scales for the soft and hard gluonic degrees of freedom, the initial state is given from an effective model, known as the Color Glass Condensate. Within this model, the soft gluons behave classical to leading order, making it possible to study their dynamics in gauge invariant fashion on a three dimensional lattice, solving Hamiltonian field equations of motion, keeping real time. Quark-Antiquark pairs are produced in the gluonic medium, known as the Glasma and manifest themselves as a source of quantum fluctuations.
They enter the dynamics of the gluons as a current, making the system semi-classical. In lattice simulations, the non-equilibrium system is tested for pressure isotropization, which is a necessary ingredient to reach a local thermal equilibrium (LTE), making a hydrodynamical description at a later stage possible. In addition, the occupation of energy modes is studied with its implications on thermalization and classicality.
Infrared spectroscopy in combination with a specially developed attenuated total reflection (ATR) flow cell and multivariate analysis was used for the quantitative analysis of beer and other beverages. IR spectra of samples were obtained in the range from below 1000 cm-1 to 4000 cm-1 and subjected to a multivariate analysis based on calibration sets with laboratory reference standards. In the case of beer, this calibration set included 240 beer samples spanning the entire range of ethanol content, extract and CO2. Based on this calibration, an infrared and UV/Vis spectroscopy-based sensor for the quick and quantitative quality control of beer was developed and subjected to extensive tests in breweries. This sensor meets and exceeds all requirements from brewers for the routine control in the production and bottling. Its use for other beverages, for example wine, juices or apple wine, requires only another set of calibration data for the specific beverage.
Das Experiment ALICE (A Large Ion Collider Experiment) am CERN (Conseil Européen pour la Recherche Nucléaire) LHC (Large Hadron Collider) fokussiert sich auf die Untersuchung stark wechselwirkender Materie unter extremen Bedingungen. Solche Bedingungen existierten wenige Mikrosekunden nach dem Urknall, als die Temperaturen so hoch waren, dass Partonen (Quarks und Gluonen) nicht zu farbneutralen Hadronen gebunden waren. In solch einem Quark-Gluon-Plasma können sich die Partonen frei bewegen, wobei sie allerdings mit anderen Partonen aus dem Medium stark wechselwirken. Am LHC werden Bleikerne auf ultra-relativistische Energien von bis zu 2.68 TeV beschleunigt und zur Kollision gebracht, wobei für weniger als 10 fm/c ein QGP entsteht, das schnell expandiert. Die Partonen hadronisieren, wenn das QGP sich auf Temperaturen von weniger als der Phasenübergangstemperatur von ≈155MeV abkühlt. Die finalen Teilchen- und Impulsverteilungen werden werden vom ALICE Detektor gemessen und geben Aufschluss auf elementare Prozesse im QGP.
Die TPC (Time Projection Chamber ) ist eines der wichtigsten Detektorsysteme von ALICE. Sie trägt maßgeblich zur Rekonstruktion von Teilchenspuren und zur Identifikation der Teilchensorten bei mittleren Rapiditäten bei. Die TPC ist eine große zylindrische Spurendriftkammer und besteht aus einem 88mˆ3 großen Gasvolumen, das von der zentralen Hochspannungselektrode in zwei Seiten geteilt wird. Durchquert ein Teilchen das Gasvolumen, ionisiert es entlang seiner Spur eine spezifische Menge von Gasatomen. Die Ionisationselektronen driften entlang des extrem homogenen elektrischen Feldes zu den Auslesekammern an den Endkappen auf beiden Seiten der TPC. Die Messung der Position und der Menge der Ionisationselektronen erlaubt die Rekonstruktion der Teilchenspur sowie, in Kombination mit der Impulsmessungen über die Krümmung der Teilchenspur im Magnetfeld, die Bestimmung der Teilchensorte über den spezifischen Energieverlust pro Wegstrecke im Gas. Das Gasvolumen der TPC war in LHC Run 1 (2010–2013) mit Ne-CO_2 (90-10) gefüllt. Die Gasmischung wurde zu Ar-CO_2 (88-12) für Run 2 (2015–2018) geändert. Als Auslesekammern wurden Vieldrahtproportionalkammern verwendet, die aus einer segmentierten Ausleseebene, einer Anodendrahtebene, einer Kathodendrahtebene und einem Gating-Grid (GG) bestehen. Das GG is eine zusätzliche Drahtebene, die durch zwei verschiedene Spannungseinstellungen transparent oder undurchlässig für Elektronen und positive Ionen geschaltet werden kann.
In den ersten Daten von Run 2 bei hohen Interaktionsraten wurden große Verzerrungen der gemessenen Spurpunkte beobachtet, die auf Grund von Verzerrungen des Driftfeldes auftreten und nicht von Daten aus Run 1 bekannt waren. Diese Verzerrungen treten nur sehr lokal an den Grenzen von manchen der inneren Auslesekammern (IROCs) auf. Zudem wurden auch große Verzerrungen in einer (C06) der äußeren Auslesekammern (OROCs) festgestellt, die sich bei einem bestimmten Radius über die ganze Breite der Kammer erstrecken. Die Ergebnisse dieser Arbeit befassen sich mit der Untersuchung jener Verzerrungen und ihrer Ursache, sowie mit der Entwicklung von Strategien um die Verzerrungen zu minimieren.
Messungen der Verzerrungen in den IROCs und Vergleiche mit Simulationen lassen darauf schließen, dass die Verzerrungen von positiver Raumladung hervorgerufen werden, die durch Gasverstärkung an sehr begrenzten Regionen der Auslesekammern entsteht und sich durch das Driftvolumen bewegt. Es werden charakteristische Abhängigkeiten von der Interaktionsrate sowie systematische Veränderungen bei Umkehrung der Orientierung des Magnetfeldes gemessen. Eine erneute Analyse von Run 1 Daten mit den Methoden aus Run 2 zeigt, dass die Verzerrungen bereits in Run 1 auftraten, jedoch durch die Ne-Gasmischung und niedrigere Interaktionsraten um eine Größenordnung kleiner waren. Neue Daten aus Run 2, für die die Gasmischung zeitweise wieder von Ar-CO_2 zu Ne-CO_2- N_2 geändert wurde, bestätigen die Ergebnisse der Run 1 Datenanalyse. Der Ursprung der Raumladung wird systematisch eingegrenzt. Es werden einzelne IROCs identifiziert, an deren Anodendrähten die Raumladung entsteht. Physikalische Modelle ermöglichen es, die Entstehung der Raumladung auf das Volumen zurückzuführen, das sich zwischen zwei IROCs befindet. Damit besteht die Vermutung, dass einzelne Spitzen von Anodendrähten am äußeren Rand dieser IROCs in das Gasvolumen hineinragen und somit hohe elektrische Felder erzeugen, an denen Gasverstärkung stattfindet. Die positiven Ionen können dann ungehindert in das Driftvolumen gelangen. Um diesen Effekt zu unterdrücken, wird das Potential der Cover-Elektroden angepasst, die sich auf den Befestigungsvorrichtungen der Drahtebenen an den Kammerrändern befinden. Dadurch kann die Menge von Ionisationselektronen, die in das Volumen zwischen zwei IROCs hineindriftet und vervielfacht wird, eingeschränkt werden. Über elektro-statische Simulationen und Messungen wird eine Einstellung für das Cover-Elektroden-Potential gefunden, mit der die Verzerrungen auf 30 % reduziert werden können. Die Verzerrungen in OROC C06 entstehen durch positive Ionen, die aus der Verstärkungsregion in das Driftvolumen gelangen, da an dieser bestimmten Stelle zwei aufeinanderfolgende GG-Drähte den Kontakt verloren haben. Die Verzerrungen werden um mehr als einen Faktor 3 reduziert, indem die Hochspannung der Anodendrähte um 50 V und somit der Gasverstärkungsfaktor um einen Faktor 2 verringert wird und indem das Potential der noch funktionierenden GG-Drähte erhöht wird.
Zusammenfassend konnten die lokalen Raumladungsverzerrungen für die letzte Pb−Pb Strahlzeit von Run 2 auf weniger als 1cm bei den höchsten Interaktionsraten verringert werden. Zudem wurde der Anteil des von Raumladungsverzerrungen betroffenen Volumens der TPC signifikant verringert, sodass die ursprüngliche Auflösung der Spurrekonstruktion wieder erreicht werden konnte.
Anti-inflammatory effects of low-dose irradiation often follow a non-linear dose–effect relationship. These characteristics were also described for the modulation of leukocyte adhesion to endothelial cells. Previous results further revealed a contribution of reactive oxygen species (ROS) and anti-oxidative factors to a reduced leukocyte adhesion. Here, we evaluated the expression of anti-oxidative enzymes and the transcription factor Nrf2 (Nuclear factor-erythroid-2-related factor 2), intracellular ROS content, and leukocyte adhesion in primary human microvascular endothelial cells (HMVEC) upon low-dose irradiation under physiological laminar shear stress or static conditions after irradiation with X-ray or Carbon (C)-ions (0–2 Gy). Laminar conditions contributed to increased mRNA expression of anti-oxidative factors and reduced ROS in HMVEC following a 0.1 Gy X-ray and 0.5 Gy C-ion exposure, corresponding to reduced leukocyte adhesion and expression of adhesion molecules. By contrast, mRNA expression of anti-oxidative markers and adhesion molecules, ROS, and leukocyte adhesion were not altered by irradiation under static conditions. In conclusion, irradiation of endothelial cells with low doses under physiological laminar conditions modulates the mRNA expression of key factors of the anti-oxidative system, the intracellular ROS contents of which contribute at least in part to leucocyte adhesion, dependent on the radiation source.
Bounded rationality is one crucial component in human behaviours. It plays a key role in the typical collective behaviour of evacuation, in which heterogeneous information can lead to deviations from optimal choices. In this study, we propose a framework of deep learning to extract a key dynamical parameter that drives crowd evacuation behaviour in a cellular automaton (CA) model. On simulation data sets of a replica dynamic CA model, trained deep convolution neural networks (CNNs) can accurately predict dynamics from multiple frames of images. The dynamical parameter could be regarded as a factor describing the optimality of path-choosing decisions in evacuation behaviour. In addition, it should be noted that the performance of this method is robust to incomplete images, in which the information loss caused by cutting images does not hinder the feasibility of the method. Moreover, this framework provides us with a platform to quantitatively measure the optimal strategy in evacuation, and this approach can be extended to other well-designed crowd behaviour experiments.
Der Kristalldetektor als Empfänger thermischer Strahlung im Gebiet von 100-1000 μ Wellenlänge
(1957)
Some terms identify enigmata of today’s cosmology: “Inflation” is expected to explain the homogeneity and isotropy of the cosmic background. The repulsive force of a “dark energy” shall prevent a re-collapse of the cosmos. The additional gravitational effect of a “dark matter” was originally supposed to explain the deviations of the rotation curves of the galaxies from Kepler’s laws. Adopting a theory founded on the core notion of absolute quantum information–Protyposis–being a cosmological concept from the outset, the observed phenomena can be explained without postulating further unknown specific “particles” or “fields”. Moreover, this theory allows for a rationalization of the fact that huge black holes with their enormous jet structures, acting as “seeds” of the galaxies, are detected ever closer to the big bang. The problem of the rotation curves in the galaxies can be addressed outside of General Relativity within a Newtonian approximation: by an attenuation of the gravitational acceleration as in the modified Newtonian dynamics, or by the effect of additional invisible “particles of dark matter”, yet unknown and not yet established in natural sciences. Within the Protyposis theory, these problems are solved without having to invent a lot of parameters. The cosmology of the Protyposis causes the change of the gravitational acceleration in the vicinity of large (black hole) masses and, at the same time, avoids a recollapse of the cosmos for which a cosmological constant or “dark energy” was invented.
Within the framework of the pairing plus quadrupole interaction model and by using the technique of quasi spin formalism it is possible to determine the collective potential and kinetic energy surfaces as analytic functions of the particle number in the limit that single particle splittings are neglected. Pushing the quasi spin model in an extended version up to the 4th order in perturbation theory the stiffness and mass parameters of harmonic and anharmonic terms for Dy, Er, Yb, and Hf-isotopes have been calculated. The theoretical particle dependence of collective quantities shows a good qualitative and even quantitative agreement with experimental data and former calculations.
The reactions of diluted aqueous solutions of SO2 resp. HSO3-ions with MnO4-or Ce4+ ions in the pH range 1-4 produce chemiluminescence in the spectral region of 450-600 nm. Measurements of the time course of the light emission and their simulation on an analog computer led to a reaction scheme in which a recombination product of primarily formed HSO3 radicals -of a lifetime of about 1 second -appears as precursor of electronically excited SO2 molecules. The participation of singlet oxygen can be excluded because at least the reaction with Ce4+ ions proceeds also in the absence of oxygen.
The RFQ direct injection project (RFQ-DIP) for the neutrino physics experiment IsoDAR aims at an efficient injection of a high-current H²⁺ beam into the dedicated 60 MeV driver cyclotron. Therefore, it is intended to use a compact 32.8 MHz RFQ structure of the split-coaxial type as a pre-buncher. To determine the thermal elongation of the 1.4 m long electrode rods as well as the thermal frequency detuning of the RF structure at a maximum nominal power load of 3.6 kW, an extensive thermal and structural mechanical analysis using COMSOL Multiphysics was conducted. The water heating along the cooling channels as well as the properties of heat transfer from the copper structure to the cooling water were taken into account, which required CFD simulations of the cooling water flow in the turbulent regime. Here we present the methods and results of the sophisticated thermal and structural mechanical simulations using COMSOL and provide a comparison to more simplistic simulations conducted with CST Studio Suite.
The two-nucleon potential is assumed to be a quadratic function of momentum: ν = ν1 (r) + pν2(r)p. The BETHE-GOLDSTONE equation (l = 0) has been solved for two different choices of ν. An analytical, approximate solution is obtained.
Experiments on Vibrational Energy Transfer (VET) in proteins contribute to our understanding of fundamental biological processes such as allostery, dissipation of excess energy, and possibly enzymatic catalysis. While these processes have been studied for a long time, many questions remain unanswered. The aim of this work was to expand the application of existing spectroscopic techniques to investigate VET, seeking tailored solutions for the diversity of proteins and amino acid environments. Additionally, new target proteins were to be established to broaden the spectrum of VET experiments towards the role of VET and low-frequency protein modes (LFMs).
To test their suitability as VET sensors, the non-canonical amino acids (ncAAs) Azidoalanine (N3Ala), azido-L-Homoalanine (Aha), p-azido-Phenylalanine (N3Phe), p-cyano-Phenylalanine (CNPhe), and 4-cyano-Tryptophan (CNTrp) were coupled to the VET donor β-(1-azulenyl)-L-Alanine (AzAla) in dipeptides. Their spectral properties were compared using FTIR and VET spectra in H2O, dimethyl sulfoxide, and tetrahydrofuran.
The solvent strongly influences the measured VET signals, which can be explained by the direct interaction of the solvent with the dipeptides. Additionally, the peak time within the subgroups of azide and nitrile sensors increased with the size of the side chain, indicating the dependence between peak time and the distance between VET donor and sensor. When incorporated into a protein, solvent interactions are less dominant. Therefore, Aha, N3Phe, and CNPhe were additionally incorporated at two different positions in the PDZ protein domain and investigated. Due to Fermi resonances, signals from azide sensors are challenging to predict, unlike those of the nitrile sensors.
Overall, the experiments showed that nitrile groups can serve well as VET sensors, as their lower extinction coefficient is compensated for by a narrower bandwidth. This expands the number of potential target proteins, and sensor incorporation can be less disruptive at various protein locations.
Since the VET donor AzAla can inject the energy of a photon into a protein as vibrational energy at a specific location, it can also be used for the targeted excitation of LFMs. If these modes are involved in an enzymatic reaction, a direct influence on activity is expected. This hypothesis has long existed but has not been definitively verified. Some studies have found evidence for the involvement of LFMs in formate dehydrogenase (FDH) catalysis. Therefore, FDH was chosen for the investigation of LFMs in enzymes. This specific system additionally allows the use of a natural VET sensor: it forms a stable complex with NAD+ and N3-, an excellent IR marker. Thus, it provided the opportunity to test low-molecular-weight non-covalent ligands as VET sensors.
After ensuring sufficient AzAla supply through the internal establishment of an enzymatic synthesis, AzAla could be incorporated at various positions in FDH. Despite spectral overlap between free and bound N3-, the latter could be identified by its narrower FWHM. For some variants, no binding could be observed. Circular dichroism spectra showed that these variants structurally deviate slightly from other variants and the wild type (WT). VET could be observed over 22 Å from two regions of the protein to the N3- bound in the active center, at protein concentrations of below 2 mM. Unbound N3- did not generate signals, allowing it to be added in excess ensuring the saturation of the protein in VET experiments.
The activity of FDH WT and four AzAla mutants was investigated under substrate saturation without and with AzAla excitation. In these experiments, a slight reduction in activity under illumination was observed, even for the WT, who is not expected to interact with the excitation light. So far, a difference in sample temperature cannot be excluded as the cause for this decline.
The presented experiments with FDH illustrate the potential of low-molecular-weight ligands as VET sensors, with N3- being particularly attractive due to its simple structure (preventing Fermi resonances) and its high extinction coefficient. Its use can add many metalloproteins as potential targets for VET experiments and allows investigation without a VET sensor ncAA. Additionally, initial experiments were conducted to measure light-dependent FDH activity. By specifically exciting protein LFMs, this project could contribute in the future to answering longstanding questions about the extraordinary catalytic efficiency of enzymes.
Im Clusterprojekt ELEMENTS arbeiten Physiker*innen verschiedenster Fachgebiete eng mit einander zusammen, um die Entstehung schwerer Elemente im Universum zu erforschen. Nur durch diese interdisziplinäre Kollaboration kann das komplexe Zusammenspiel mikroskopischer und makroskopischer Ereignisse entschlüsselt werden. Dabei bilden Theorie, Experiment und Beobachtung die drei großen Pfeiler des Forschungsvorhabens.
DIE ARCHITEKTUR DER ZELLE : Wie sehen die Bausteine des Lebens genau aus, wie interagieren die zellulären Akteure miteinander? Im Rahmen der Exzellenzcluster-Initiative SCALE (Subcellular Architecture of Life) wollen Frankfurter Wissenschaftlerinnen und Wissenschaftler diesen wichtigen Fragen nachgehen. Das Projekt ist interdisziplinär: Mehrere Forschungsgruppen, deren Schwerpunkt Biophysik ist, arbeiten zusammen. Der Biophysiker Achilleas Frangakis und die Bioinformatikerin Kathi Zarnack sind auch dabei. Sie verfolgen im Rahmen des Projekts große Ziele.
Supermassive black hole binaries (SMBHBs) are among the most powerful known sources of gravitational waves (GWs). Accordingly, these systems could dominate the stochastic gravitational wave background (GWB) in the micro- and millihertz frequency range. The time until the merger of two SMBHs in the nucleus of a galaxy can be shortened through dynamical friction due to the presence of dark matter (DM) spikes around the SMBHs. To calculate the orbital evolution of individual SMBHBs within the Newtonian approximation, the SMBHBpy code is developed. This work confirms that the GW signals from SMBHBs with DM spikes can be clearly distinguished from those without any matter. Making use of the upper limit on the characteristic strain of the GWB derived from the data of the Cassini spacecraft mission in 2001/2002, a lower limit on the matter density around SMBHBs is derived in this study. The result is subsequently compared with the theoretical density profiles for cold dark matter and self-interacting dark matter spikes.
Binary neutron star mergers represent unique observational phenomena because all four fundamental interactions play an important role at various stages of their evolution by leaving imprints in astronomical observables. This makes their accurate numerical modeling a challenging multiphysics problem that promises to increase our understanding of the high-energy astrophysics at play, thereby providing constraints for the underlying fundamental theories such as the gravitational interaction or the strong interaction of dense matter. For example, the first and so far only multi-messenger observation of the binary neutron star merger GW170817 resulted in numerous bounds on the parameters of isolated non-rotating neutron stars, e.g., their maximum mass or their distribution in radii, which can be directly used to constrain the equation of state of cold nuclear matter. While many of these results stem from the observation of the inspiral gravitational-wave signal, the postmerger phase of binary neutron star mergers encodes even more details about the extreme physics of hot and dense neutron star matter. In this Thesis we focus on the exploration of dissipative and shearing effects in binary neutron star mergers in order to identify novel approaches to constrain hot and dense neutron star matter.
The first effect is the well-motivated dissipation of energy due to the bulk viscosity which arises from violations of weak chemical equilibrium. We start by exploring the impact of bulk viscosity on black-hole accretion. This simplified problem gives us the opportunity to develop a test case for future codes taking into account the effects of dissipation in a fully general-relativistic setup and build intuition in the physics of relativistic dissipation. Next, we move on to isolated neutron stars and binary neutron star mergers by developing a robust implementation of bulk-viscous dissipation for numerical relativity simulations. We test our implementation by calculating the damping of eigenmodes of isolated neutron stars and the violent migration scenario. Finally, we present the first results on the impact of bulk viscosity on binary neutron star mergers. We identify a number of ways how bulk viscosity impacts the postmerger phase, out of which the suppression of gravitational-wave emission and dynamical mass ejection are the most notable ones.
In the last part of this Thesis we investigate how the shearing dynamics at the beginning of the merger affects the amplification of different initial magnetic-field topologies. We explore the hypothesis that magnetic fields which are located only in a small region near the stellar surface prior to merger lead to a weaker magnetic-field amplification. We show first evidence which confirms this hypothesis and discuss possible implications for constraining the physics of superconduction in cold neutron stars.
This work focuses on the investigation of K+, K- and ϕ-meson production in Ag(1.58 A GeV)+Ag collisions. The energetically cheapest channel for direct K+ production in binary NN-collisions NN→NΛK+ lies at exactly this energy. For the remaining K- and ϕ-mesons, an excess energy of 0.31 GeV and 0.34 GeV in the centre of mass system has to be provided by the system. This makes these particles an excellent probe for effects inside the medium.
K+ and K- mesons can be reconstructed directly as they possess a cτ of approximately 3.7 m. Using the approximately 3 billion recorded Ag(1.58 A GeV)+Ag 0-30% most central collision events, all reconstructed K+ and K- within the detector acceptance are investigated for their kinematic properties and their particle production rates compared to a selection of existing models.
We show that the implementation of the 1/c2 transverse current–current interaction between electrons resulting from the non-relativistic QED into the standard self-consistent electron BCS model in bulk under thermal equilibrium in the stable superconductive phase ensures the full compensation of a constant external magnetic field by the internal magnetic field created by the electrons, i.e. one has an ideal diamagnet.
We investigate the space-time dependence of electromagnetic fields produced by charged participants in an expanding fluid. To address this problem, we need to solve the Maxwell's equations coupled to the hydrodynamics conservation equation, specifically the relativistic magnetohydrodynamics (RMHD) equations, since the charged participants move with the flow. To gain analytical insight, we approximate the problem by solving the equations in a fixed background Bjorken flow, onto which we solve Maxwell's equations. The dynamical electromagnetic fields interact with the fluid's kinematic quantities such as the shear tensor and the expansion scalar, leading to additional non-trivial coupling. We use mode decomposition of Green's function to solve the resulting non-linear coupled wave equations. We then use this function to calculate the electromagnetic field for two test cases: a point source and a transverse charge distribution. The results show that the resulting magnetic field vanishes at very early times, grows, and eventually falls at later times.
The most precise measurements to date of the 3ΛH lifetime τ and Λ separation energy BΛ are obtained using the data sample of Pb-Pb collisions at √= 5.02 TeV collected by ALICE at the LHC. The 3ΛH is reconsNN structed via its charged two-body mesonic decay channel (3ΛH→ 3He + π− and the charge-conjugate process). The measured values τ=[253±11 (stat.)±6 (syst.)] ps and BΛ=[102±63 (stat.)±67 (syst.)] keV are compatible with predictions from effective field theories and confirm that the 3ΛH structure is consistent with a weakly-bound system.
The most precise measurements to date of the 3ΛH lifetime τ and Λ separation energy BΛ are obtained using the data sample of Pb-Pb collisions at √sNN = 5.02 TeV collected by ALICE at the LHC. The 3ΛH is reconstructed via its charged two-body mesonic decay channel (3ΛH→ 3He + π− and the charge-conjugate process). The measured values τ=[253±11 (stat.)±6 (syst.)] ps and BΛ=[72±63 (stat.)±36 (syst.)] keV are compatible with predictions from effective field theories and conclusively confirm that the 3ΛH is a weakly-bound system.
The most precise measurements to date of the 3ΛH lifetime τ and Λ separation energy BΛ are obtained using the data sample of Pb-Pb collisions at √sNN = 5.02 TeV collected by ALICE at the LHC. The 3ΛH is reconstructed via its charged two-body mesonic decay channel (3ΛH→ 3He + π− and the charge-conjugate process). The measured values τ=[253±11 (stat.)±6 (syst.)] ps and BΛ=[72±63 (stat.)±35 (syst.)] keV are compatible with predictions from effective field theories and conclusively confirm that the 3ΛH is a weakly-bound system.
The most precise measurements to date of the 3ΛH lifetime τ and Λ separation energy BΛ are obtained using the data sample of Pb-Pb collisions at √sNN = 5.02 TeV collected by ALICE at the LHC. The 3ΛH is reconstructed via its charged two-body mesonic decay channel (3ΛH → 3He + π− and the charge-conjugate process). The measured values τ = [253 ± 11 (stat) ± 6 (syst)] ps and BΛ = [102 ± 63 (stat) ± 67 (syst)] keV are compatible with predictions from effective field theories and confirm that the 3ΛH structure is consistent with a weakly bound system.
To determine the neutron flux in activation experiments, a commonly used monitor is zirconium and in particular the stable isotopes 94,96Zr. 96Zr is very sensitive to epithermal neutrons. Despite its widespread application, most gamma intensities of the radioactive neutron capture product, 97Zr, yield large uncertainties. With the help of a new γ spectroscopy setup and GEANT simulations, we succeeded in determining a new set of γ-ray intensities with significantly reduced uncertainties.
The Compressed Baryonic Matter (CBM) is one of the core experiments at the future Facility for Anti-proton and Ion Research (FAIR), Darmstadt, Germany. Its goal is to investigate nuclear matter characteristics at high net-baryon densities and moderate temperatures. The Silicon Tracking System (STS) is a central detector system of CBM.
It is placed inside a 1Tm magnet and operated at a temperature of about −10 °C to keep radiation-induced bulk current in the 300μm double-sided microstrip silicon sensors low. The design of the STS aims to minimize the material budget in the detector acceptance (2.5° < θ < 25°). In order to do so, the readout electronics is placed outside the active area, and the analog signals are transported via ultra-thin micro-cables. The STS comprises eight tracking stations with 876 modules. Each module is assembled on a carbon fiber ladder, which is subsequently mounted in the C-shaped aluminum frame.
The scope of the thesis focused on developing a modular control system framework that can be implemented for different sizes of experimental setups. The developed framework was used for setups that required a remote operation, like the irradiation of the powering modules for the front-end electronics (FEE), but also in laboratory-based setups where the automation and archiving were needed (thermal cycling of the STS electronics).
The low voltage powering modules will be placed in the vicinity of the experiment, therefore they will experience a total dose of up to 40mGy over the 10 years of STS lifetime.
To estimate the effects of the radiation on the low-voltage module performance, a dedicated irradiation campaign took place. It aimed at estimating the rate of radiation induced soft errors, that lead to the switch off of the FEE.
Regular power cycles of multiple front-end boards (FEBs) pose a risk to the experiment operation. Firstly, such behavior could negatively influence the physics performance but also have deteriorating effects on the hardware. It was further assessed what are the limitations of the FEBs with respect to the thermal cycling and the mechanical stress. The results served as an indication of possible failure modes of the FEB at the end of STS lifetime. Failure modes after repeated cycles and potential reasons were determined (e.g., Coefficient of Thermal Expansion (CTE) difference between the materials).
Due to the conditions inside the STS efficient temperature and humidity monitoring and control are required to avoid icing or water condensation on the electronics or silicon sensors. The most important properties of a suitable sensor candidate are resilience to the magnetic field, ionizing radiation tolerance, and fairly small size.
A general strategy for ambient parameters monitoring inside the STS was developed, and potential sensor candidates were chosen. To characterize the chosen relative humidity sensors the developed control framework was introduced. A sampling system with a ceramic sensor and Fiber Optic Sensors (FOS) were identified as reliable solutions for the distributed sensing system. Additionally, the industrial capacitive sensors will be used as a reference during the commissioning.
Two different designs of FOS were tested: a hygrometer and 5 sensors multiplexed in an array. The FOS hygrometer turned out to be a more reliable solution. One of the possible reasons for a worse performance is a relatively low distance between the subsequent sensors (15 cm) and a thicker coating. The results obtained from the time response study pointed out that the thinner coating of about 15μm should be a good compromise between the humidity sensitivity and the time response.
The implementation of the containerized-based control system framework for the mSTS is described in detail. The deployed EPICS-based framework proved to be a reliable solution and ensured the safety of the detector for almost 1.5 years. Moreover, the data related to the performance of the detector modules were analyzed and significant progress in the quality of modules was noted. Obtained data was also used to estimate the total fluence, which was based on the leakage current changes.
The developed framework provided a unique opportunity to automate and control different experimental setups which provided crucial data for the STS. Furthermore, the work underlines the importance of such a system and outlines the next steps toward the realization of a reliable Detector Control System for STS.
In the last twenty years, a variety of unexpected resonances had been observed within the charmonium mass region. Although the existence of unconventional states has been predicted by the quantum chromodynamics (QCD), a quantum field theory describing the strong force, a clear evidence was missing. The Y(4260) is such an unexpected and supernummerary state, first observed at BaBar in 2005, and aroused great interest, because it couples much stronger to hidden charm decays (charm-anticharm states like J/Psi or h_c) instead of open charm decays (D meson pairs). This is unusual for states with masses above the D anti-D threshold. Furthermore, it decays into a charged exotic state Y(4260)->Z_c(3900)^+- pi^-+. The charge of the Z_c(3900)^+- is an indication that it comprises of two more quarks than the charm-anticharm pair, and could therefore be assumed to be a four-quark state. Due to these still not understood properties of these QCD-allowed states, they are referred to as exotic XYZ states to emphasize their particularity.
In 2017, the collaboration of the Beijing Spectrometer III (BESIII) investigated the production reaction of the Y(4260) resonance based on a high-luminosity data set. This significantly improved precision of the measurement of the cross-section sigma(e+e- -> J/Psi pi^+ pi^-) permitted a resolution into two resonances, the Y(4230) and the Y(4360). The Z_c(3900)^+- had been discovered by the BESIII collaboration in 2013, thus this experiment at the Beijing Electron-Positron Collider II (BEPCII) is a top-performing facililty to study exotic charmonium-like states.
In this work, an inclusive reconstruction of the strange hyperon Lambda in the charmonium mass region is performed to study possible decays of Y states in order to provide further insight into their nature. Finding more states or new decay channels may provide crucial hints to understand the strong interaction beyond nonperturbative approaches.
Three resonances are observed in the energy dependent cross-section: the first with a mass of (4222.01 +- 5.68) MeV and a width of (154.26 +- 28.16) MeV, the second with a mass of (4358.88 +- 4.97) MeV and a width of (49.58 +- 13.54) MeV and the third with a mass of (4416.41 +- 2.37) MeV and a width of (23.88 +- 7.18) MeV. These resonances, with a statistical significance Z > 5sigma, can be interpreted as the states Y(4230), Y(4360) and psi(4415).
Additionally, a proton momentum-dependent analysis strategy has been used in terms of the inclusiveness of the reconstruction and to address the momentum discrepancies between generic MC and measured data.
We discuss the potential of light-nuclei measurements in heavy-ion collisions at intermediate energies for the search of the hypothetical QCD critical end-point. A previous proposal based on neutron density fluctuations has brought appealing experimental evidences of a maximum in the ratio of the number of tritons times protons, divided over deuterons square, O tpd. However these results are difficult to reconcile with the state-of-the-art statistical thermal model predictions. Based on the idea that the QCD critical point can lead to a substantial attraction among nucleons, we propose new light-nuclei multiplicity ratios involving He in which the maximum would be more noticeable. We argue that the experimental extraction is feasible by presenting these ratios formed from actual measurements of total and differential yields at low and high collision energies from FOPI and ALICE experiments, respectively. We also illustrate the possible behavior of these ratios at intermediate energies applying a semiclassical method based on flucton paths using the preliminary NA49 and STAR data for O tpd as input.