Biochemie und Chemie
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The solvent dependence of the photooxidation of tryptophan and 3,4-benzopyrene in aqueous solutions was studied by quantum yield measurements. When the hydrocarbon is dissolved in aqueous solution of caffeine, the quantum yields indicate a 3,4-benzopyrene photosensitized tryptophan oxidation instead of a photocooxidation, which is indicated in aqueous solution of sodium dodecylsulfate. The same photosensitized oxidation as in caffeine solution is observed, when urea ( 6 m) is added to the soap solution, while the fluorescence and absorption spectra indicate no change in the solvation state of the hydrocarbon, comparable to the change from hydrophobic solubilization by the detergent to dipole — induced dipole complex solubilization by caffeine. It is concluded that the difference in the reaction pathways is caused by different solvation states of the excited or reacting oxygen. In the discussion of the results it is referred to reactions of inhibitors.
The degradation of the poly(A) tail is crucial for posttranscriptional gene regulation and for quality control of mRNA. Poly(A)-specific ribonuclease (PARN) is one of the major mammalian 3’ specific exo-ribonucleases involved in the degradation of the mRNA poly(A) tail, and it is also involved in the regulation of translation in early embryonic development. The interaction between PARN and the m7GpppG cap of mRNA plays a key role in stimulating the rate of deadenylation. Here we report the solution structures of the cap-binding domain of mouse PARN with and without the m7GpppG cap analog. The structure of the cap-binding domain adopts the RNA recognition motif (RRM) with a characteristic a-helical extension at its C-terminus, which covers the b-sheet surface (hereafter referred to as PARN RRM). In the complex structure of PARN RRM with the cap analog, the base of the N7-methyl guanosine (m7G) of the cap analog stacks with the solvent-exposed aromatic side chain of the distinctive tryptophan residue 468, located at the C-terminal end of the second b-strand. These unique structural features in PARN RRM reveal a novel cap-binding mode, which is distinct from the nucleotide recognition mode of the canonical RRM domains.