Biochemie und Chemie
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Cryo-electron tomography (cryo-ET) is a powerful method to elucidate subcellular architecture and to structurally analyse biomolecules in situ by subtomogram averaging (STA). Specimen thickness is a key factor affecting cryo-ET data quality. Cells that are too thick for transmission imaging can be thinned by cryo-focused-ion-beam (cryo-FIB) milling. However, optimal specimen thickness for cryo-ET on lamellae has not been systematically investigated. Furthermore, the ions used to ablate material can cause damage in the lamellae, thereby reducing STA resolution. Here, we systematically benchmark the resolution depending on lamella thickness and the depth of the particles within the sample. Up to ca. 180 nm, lamella thickness does not negatively impact resolution. This shows that there is no need to generate very thin lamellae and thickness can be chosen such that it captures major cellular features. Furthermore, we show that gallium-ion-induced damage extends to depths of up to 30 nm from either lamella surface.
The trifluoroacetylation of thymidine at room temperature was performed using trifluoroacetic acid phenylester in pyridine. A selective protection of the 5′-position was not possible: Even low molar quantities of the trifluoroacetylating agent gave rise to bis-trifluoroacetylation. The bis-trifluoroacetyl derivatives of thymidine and 5-bromo-deoxyuridine were purified by vacuum sublimation. The completely trifluoroacetylated deoxyribosides of uracil, 5-iodouracil and adenine underwent decomposition during sublimation.
The non-specific inhibition of the poly U directed polymerisation of phenylalanine through polyanions was studied. This inhibition was found to be in order as follows: dextransulfate, polyethylensulfate, heparine, ribosomal RNA and alginate. It was found that poly A, poly AP and poly AG cause a specific inhibition of the poly U directed synthesis of polyphenylalanine. Poly AG and poly AP, but not poly A were found to inhibit the poly C directed polymerisation of proline as well. The mechanism of these two types of inhibition caused by polyanions has been discussed.
HER2 belongs to the ErbB sub-family of receptor tyrosine kinases and regulates cellular proliferation and growth. Different from other ErbB receptors, HER2 has no known ligand. Activation occurs through heterodimerization with other ErbB receptors and their cognate ligands. This suggests several possible activation paths of HER2 with ligand-specific, differential response, which so far remained unexplored. Using single-molecule tracking and the diffusion profile of HER2 as a proxy for activity, we measured the activation strength and temporal profile in live cells. We found that HER2 is strongly activated by EGFR-targeting ligands EGF and TGFα, yet with a distinguishable temporal fingerprint. The HER4-targeting ligands EREG and NRGβ1 showed weaker activation of HER2, a preference for EREG and a delayed response to NRGβ1. Our results indicate a selective ligand response of HER2 that may serve as a regulatory element. Our experimental approach is easily transferable to other membrane receptors targeted by multiple ligands.
Highlights
HER2 exhibits heterogeneous motion in the plasma membrane
The fraction of immobile HER2 correlates with phosphorylation levels
Diffusion properties serve as proxies for HER2 activation
HER2 exhibits ligand-specific activation strength and temporal profiles
HER2 belongs to the ErbB sub-family of receptor tyrosine kinases and regulates cellular proliferation and growth. Different from other ErbB receptors, HER2 has no known ligand. Activation occurs through heterodimerization with other ErbB receptors and their cognate ligands. This suggests several possible activation paths of HER2 with ligand-specific, differential response, which has so far remained unexplored. Using single-molecule tracking and the diffusion profile of HER2 as a proxy for activity, we measured the activation strength and temporal profile in live cells. We found that HER2 is strongly activated by EGFR-targeting ligands EGF and TGFα, yet with a distinguishable temporal fingerprint. The HER4-targeting ligands EREG and NRGβ1 showed weaker activation of HER2, a preference for EREG, and a delayed response to NRGβ1. Our results indicate a selective ligand response of HER2 that may serve as a regulatory element. Our experimental approach is easily transferable to other membrane receptors targeted by multiple ligands.
HER2 belongs to the ErbB sub-family of receptor tyrosine kinases and regulates cellular proliferation and growth. Different from other ErbB receptors, HER2 has no known ligand. Activation occurs through heterodimerization with other ErbB receptors and their cognate ligands. This suggests several possible activation paths of HER2 with ligand-specific, differential response, which so far remained unexplored. Using single-molecule tracking and the diffusion profile of HER2 as a proxy for activity, we measured the activation strength and temporal profile in live cells. We found that HER2 is strongly activated by EGFR-targeting ligands EGF and TGFα, yet with a distinguishable temporal fingerprint. The HER4-targeting ligands EREG and NRGβ1 showed weaker activation of HER2, a preference for EREG, and a delayed response to NRGβ1. Our results indicate a selective ligand response of HER2 that may serve as a regulatory element. Our experimental approach is easily transferable to other membrane receptors targeted by multiple ligands.
Cells maintain membrane fluidity by regulating lipid saturation, but the molecular mechanisms of this homeoviscous adaptation remain poorly understood. Here, we have reconstituted the core machinery for sensing and regulating lipid saturation in baker’s yeast to directly characterize its response to defined membrane environments. Using spectroscopic techniques and in vitro ubiquitylation, we uncover a unique sensitivity of the transcriptional regulator Mga2 to the abundance, position, and configuration of double bonds in lipid acyl chains and provide unprecedented insight into the molecular rules of membrane adaptivity. Our data challenge the prevailing hypothesis that membrane viscosity serves as the measured variable for regulating lipid saturation. Rather, we show that the signaling output of Mga2 correlates with the size of a single sensor residue in the transmembrane helix, which senses the lateral pressure and/or compressibility profile in a defined region of the membrane. Our findings suggest that membrane property sensors have evolved remarkable sensitivities to highly specific aspects of membrane structure and dynamics, thus paving the way toward the development of genetically encoded reporters for such membrane properties in the future.
Pyrosulfonyldifluoride reacts with waterfree hydrazine in a molar ratio of 2 : 3 to give hydrazine -1,2-bis(sulfonylfluoride) in a low yield.. The reaction of N-fluorosulfonylamide and SOCl2 yields NH4⊕⊖ N(SO2F)2. This salt is converted to (C6H5)4P⊕⊖N(SO2F)2 in water by (C6H5)4PCl. (CH3)2NNH2 reacts with PSF3, PSF2Br, PSF2CH3 or PSF2C2H5 to yield the following compounds: (CH3)2NNHPSF2, (CH3)2NN (PSF2)2, (CH3)2NNHPSFCH3 and (CH3)2NNHPSFC2H5. The properties and the chemical behaviour of these substances are described. Results of ir-spectra, as well as 31P-, 19F- and 1H-nmr- and mass-spectra and elemental analysis characterize the compounds.
S4N3Cl reacts with sulfonic acids and imido- bissulfonyl derivatives under HCl-evolution to the following compounds: S4N3SO3CF3, S4N3N (SO2F)2, S4NSO3CH3HSO3CH3, S4N3N (SO2CF3) SO2Cl and S4N3N (SO2CF3) SO2F, They are yellow solids which decompose when heated below the melting point. The compounds are formed in nearly quantitative yield and have been characterized by elemental analysis, nmr and electronic spectra.
The reversible one-electron insertion into mono- and 1,4-di-substituted benzene derivatives is favored by dialkoxyboron and especially by dialkylboron groups. The assumption that it should be the symmetric e2u benzene molecular orbital which is occupied in the resulting radical anions can be supported by comparison of ESR coupling constants.
Hemoproteinoids related to contemporary porphyrin-dependent peroxidases were synthesized under simple conditions. The peroxidative activity of hematin increased by a factor of 50 if the hematin was bound to proteinoids whereas the catalatic activity of hematin decreased rather under the same conditions. The peroxidative activity of hemoproteinoids particularly increased with their lysine content whereas the catalatic activity especially decreased in proteinoids with high phenylalanine content. The isoelectric points of the lysine-rich peroxidic hemoproteinoids were about 8. Their relatively broad pH-activity optimum was about pH 7.0. The molecular weights were a little below 20 000. Hematin content and amino acid composition of the synthetic materials were varied greatly. The substrate specificity appeared as broad as that of biogenous peroxidases, e. g., horseradish peroxidase. Among the many substrates was NADH. The possible importance of the peroxidative oxidation of NADH-type coenzymes by primitive heterotrophic organisms or prebiological systems in an anaerobic environment is discussed.
Li6UO6 has a reversible phase transformation at 680°C and decomposes above about 850°C. At high pressure the low temperature modification becomes unstable because of an invariant point in the system Li2O—Li4UO5 at approximately 13 Kb and 620°C. β-Li6UO6 has a triclinic unit cell with a = 5.203, b= 5.520, c = 5.536 Å, α = 114.7, β = 120.7 and γ = 75.5°. The close relationship between the crystal structures of Li6TeO6 and Li6UO6 is also suggested from similar infrared spectra and from partial solid solution Li6UO6—Li6TeO6.
The interactions between human haptoglobin, Hp II (genetic types 2 - 1 and 2-2), and bovine hemoglobin, Hb, were investigated taking inhibition of complex formation and complex dissociation in various solvent media as criteria.
As shown by relative peroxidase activity and gel chromatography, complex dissociation occurs at high concentrations of guanidine HCl, urea, sodium chloride, dioxane, and formaldehyde, while in case of sodium dodecylsulfate a low molar ratio (SDS/Hb -Hp<5) is sufficient to split the complex. In general the formation of the complex stabilizes the structure of its constituents.
Excluding solvent conditions which lead to denaturation (as measured by optical rotation), ionpairs and H-bonds seem to prevail in the stabilization of the complex, while hydrophobic interactions should be of minor importance. Chemical modification of histidine and tyrosine with diazonium-1-H-tetrazole and N-acetylimidazole, respectively, prove histidyl-groups in Hb and tyrosylgroups in Hp to participate in the Hb-Hp contact, thus confirming earlier results.
Fluorescense spectra of lactate dehydrogenase * (E.C. 1.1.1.27) were investigated in the presence of the coenzyme fragments dihydronicotinamide mononucleotide and dihydronicotinamide-ribose-5'-pyrophospho- (P2) -5“-ribose. The reduced mononucleotide is enzymatically less active as a hydrogen donor. However, formation of a complex with the enzyme was not observed under the conditions used. All the other substances: dihydronicotinamide-ribose-5'-pyrophospho- (P2) -5“-ribose, dihydronicotinamide- benzimidazole-dinucleotide, dihydronicotinamide-3-desazapurine-dinucleotide and dihydronicotinamide-6-mercaptopurine-dinucleotide form more or less stable complexes with lactate dehydrogenase. The complexes do not markedly differ from the complex formed with the natural cofactor. In all cases spectra indicate change in conformation of the coenzyme by forming the coenzyme-enzyme-complex which has been proposed by VELICK 1 too. The cysteine residues of the lactate dehydrogenase are not essential for binding the coenzyme to the active center; this was shown with mercury blocked enzyme.
It is possible to determine the anomeric configuration of nucleosides by a simple, spectrophotometric assay, using the nucleoside phosphorylase activity of cell-free extracts from E. coli. β-nucleo-sides are split, a-anomers remain unchanged. For a single estimation 20-40 µg of nucleoside are required. 6-Azauracil- and 8-azaguanine-β-ᴅ-riboside and some nucleoside phosphates are resistant, a fact, which is of interest in view of the specificity of nucleoside phosphorylases.
Gegenstand der vorliegenden Untersuchung ist das hydrolytische Verhalten von Glycyl-seryl-alanin beim Erhitzen in einer rein wäßrigen Lösung bei einem pH-Wert in der Nähe des isoelektrischen Punktes. Die Reaktionsmöglichkeiten des Tripeptids und aller Folgeprodukte, die Alanin enthalten, wurden qualitativ aufgeklärt und die kinetischen Daten der einzelnen Reaktionen durch quantitative Hydrolyseversuche an den mit dem Kohlenstoffisotop 14C geeignet radioaktiv markierten Verbindungen Glycyl-seryl-alanin, Seryl-alanin, Alanyl-serin und Seryl-alanyl-diketopiperazin bei mehreren Temperaturen zwischen 55 und 95 °C bestimmt. Die Trennung der Hydrolysatproben erfolgte mit Hilfe der Papierchromatographie bzw. der Papierelektrophorese; für die Konzentrationsbestimmung der radioaktiven Substanzen wurde ein Verfahren ausgearbeitet, das eine Radioaktivitätsmessung mit hoher reproduzierbarer Ausbeute direkt auf den zur Trennung benutzten Filterpapieren nach der Flüssigkeitsszintillations-Methode ermöglicht.
Alle beobachteten Reaktionen verlaufen unter den Versuchsbedingungen nach einem Zeitgesetz 1. Ordnung. Die Konzentrations-Zeit-Funktionen der einzelnen Reaktionsteilnehmer wurden durch Auflösung der simultanen linearen Differentialgleichungen 1. Ordnung bestimmt und zur Berechnung der Reaktionsgeschwindigkeits-Konstanten nach einem iterativen Ausgleichsverfahren herangezogen.
In der Diskussion wird versucht, die beobachteten thermodynamischen Daten in ihrer Größenordnung aus anderen Eigenschaften und aus der Molekularstruktur der einzelnen Verbindungen abzuleiten und durch bestimmte Reaktionsmechanismen zu interpretieren.
Zur Klärung der Frage nach der Beteiligung von Protein-Actinomycin (AMC) -Wechselwirkungen am antibiotischen Wirkungsmechanismus von AMC wurden mit Hilfe von Absorptions-, Fluoreszenz- und Rotationsdispersions-Spektroskopie, sowie Gelfiltration, Gleichgewichts-Dialyse, Ultrazentrifugation und enzymatischen Tests physikalisch-chemische Wechselwirkungen von AMC und Actinocinanalogen mit Ribonuclease, Serumalbumin und einigen SH-Enzymen (ADH, LDH, GAPDH) untersucht. Photochemische Reaktionen wurden ausgeschlossen.
Eine Bildung starker Komplexe wird nur bei pH < 2 beobachtet. Unter quasi-physiologischen Bedingungen des Mediums ergibt sich aus einer Differenzbande im Bereich der Phenoxazin-Absorption schwache Komplexbildung, die bei hohen Proteinkonzentrationen auch durch die gemeinsame Sedimentation von AMC und Protein bestätigt wird. Die Peptid-Lacton-Ringe des AMC und die aromatischen Aminosäuren der Proteine scheinen an der Wechselwirkung nicht beteiligt zu sein (Reaktion mit AMC-Dimeren, Null-Differenzspektrum bei λ ~ 280 mμ). Die Ähnlichkeit im Verhalten von Cystein, Glutathion und SH-Enzymen und der kompetitive Effekt von Cystein bei der AMC-Enzym-Wechselwirkung weisen auf eine Beteiligung von Cystein am Komplex hin.
Eine durch AMC bewirkte Desaktivierung oder Stimulierung von Ribonuclease wird nicht beobachtet. Dagegen tritt im Fall von SH-Enzymen im pH-Optimum eine dem molaren Verhältnis AMC/Enzym proportionale Desaktivierung auf, die durch DNA bzw. RNA nur z. T. aufgehoben wird. Konformationsänderungen sind dabei nicht nachweisbar; die optische Drehung erweist sich als additiv. „Extrinsic“ Cotton-Effekte treten nicht auf.
Die SH-Spezifität des Ribonuclease-Inhibitors legt in Analogie zu den untersuchten SH-Enzymen die Annahme nahe, daß eine AMC-Protein-Wechselwirkung (Blockierung des RNase-Inhibitors) am biologischen Wirkungs-Mechanismus des AMC beteiligt sein könnte.
The ribonucleic acid of reovirus was extracted with 2 M sodium perchlorate solution and spread by the protein monolayer technique. Areas of the monolayer were transferred to support films, rotary shadowed, and observed in the electron microscope. Filaments of RNA obtained by extraction prior to spreading were similar in appearance and in distribution of contour lengths (0.2 to 1.2 μ) to those obtained by phenol extraction of the virus. Most of the filaments resulting from extraction of the virus suspension during spreading on a sodium perchlorate solution, however, were longer than 1 μ. The lengths of the longest filaments exceeded the 5 μ length predicted from chemical data for one single piece of complementary-stranded RNA in the reovirus particle.
The short filaments, 1.2 μ and less in length, fell into a tri-modal pattern of length distribution with peaks at 0.35 μ, 0.60 μ and 1.10 μ. These shorter lengths probably resulted from breakage of the intact RNA during the extraction procedures. The consistently observed pattern of length distribution suggests that they represent relatively stable subunits of the molecule.
Sodium perchlorate extracted reovirus RNA was thermally denatured in formaldehyde prior to spreading by the protein monolayer technique. Length distributions and relative numbers of filaments in the peaks of the tri-modal distribution pattern were similar to those found for unheated material when extracted prior to spreading. This similarity indicates that heating subsequent to extraction produced no further filament breakage. The thin, kinky appearance of the heated filaments, and the appearance of congruent pairs, indicated that heating had separated the strands of the complementary-stranded RNA subunits.
The formation of aliphatic α-amino acids by X-ray induced carboxylation of simple amines or amination of simple carboxylic acids is not favored over the formation of other amino acids. The new carboxylic and amino groups are more or less distributed statistically over the carbon atoms of the starting material. On radiationchemical formation of aliphatic hydrocarbons over C3, therefore, an increasing amount of unusual amino acids is produced. The results are influenced by various parameters such as temperature, pH, concentration, linear energy transfer and total dosis of radiation applied. Also peptides can be formed radiationchemically. However, the formation of greater molecules by radiationchemical processes under the conditions of a primitive earth seems to have only a low probability. The reaction mechanisms of radiationchemical carboxylation and amination are discussed.