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Our earth, which is a tiny in the infinity of the universe, is getting to be a difficult place to live in. Environmental problems such as pollution and global warming on one side and various disagreements and wars in every corner of the world on the other side, make most of the people unhappy and cause suffering. Everybody living in this world regardless of his or her ethnicity or religion has got share of responsibility to make this earth a place to live in peace and tranquillity. Within this framework, the most important thing in the world is that people with different languages and religious denominations should understand each other better to achieve the goal of creating more secure and peaceful environment for humanity. To make a contribution to this endeavour the Qur’anic guidelines which appear to open a sound way and strengthen the ground of a dialogue between celestial religions should be elucidated.
Contrastive focus
(2007)
The article puts forward a discourse-pragmatic approach to the notoriously evasive phenomena of contrastivity and emphasis. It is argued that occurrences of focus that are treated in terms of "contrastive focus", "kontrast" (Vallduví & Vilkuna 1998) or "identificational focus" (É. Kiss 1998) in the literature should not be analyzed in familiar semantic terms like introduction of alternatives or exhaustivity. Rather, an adequate analysis must take into account discourse-pragmatic notions like hearer expectation or discourse expectability of the focused content in a given discourse situation. The less expected a given content is judged to be for the hearer, relative to the Common Ground, the more likely a speaker is to mark this content by means of special grammatical devices, giving rise to emphasis.
The impact of naval sonar on beaked whales is of increasing concern. In recent years the presence of gas and fat embolism consistent with decompression sickness (DCS) has been reported through postmortem analyses on beaked whales that stranded in connection with naval sonar exercises. In the present study, we use basic principles of diving physiology to model nitrogen tension and bubble growth in several tissue compartments during normal div ng behavior and for several hypothetical dive profiles to assess the risk of DCS. Assuming that normal diving does not cause nitrogen tensions in excess of those shown to be safe for odontocetes, the modeling indicates that repetitive shallow dives, perhaps as a consequence of an extended avoidance reaction to sonar sound, can indeed pose a risk for DCS and that this risk should increase with the duration of the response. If the model is correct, then limiting the duration of sonar exposure to minimize the duration of any avoidance reaction therefore has the potential to reduce the risk of DCS.
Thioredoxin 1 and thioredoxin 2 have opposed regulatory functions on hypoxia-inducible factor-1α
(2007)
Hypoxia inducible factor 1 (HIF-1), a key regulator for adaptation to hypoxia, is composed of HIF-1alpha and HIF-1beta. In this study, we present evidence that overexpression of mitochondria-located thioredoxin 2 (Trx2) attenuated hypoxia-evoked HIF-1alpha accumulation, whereas cytosolic thioredoxin 1 (Trx1) enhanced HIF-1alpha protein amount. Transactivation of HIF-1 is decreased by overexpression of Trx2 but stimulated by Trx1. Inhibition of proteasomal degradation of HIF-1alpha in Trx2-overexpressing cells did not fully restore HIF-1alpha protein levels, while HIF-1alpha accumulation was enhanced in Trx1-overexpressing cells. Reporter assays showed that cap-dependent translation is increased by Trx1 and decreased by Trx2, whereas HIF-1alpha mRNA levels remained unaltered. These data suggest that thioredoxins affect the synthesis of HIF-1alpha. Trx1 facilitated synthesis of HIF-1alpha by activating Akt, p70S6K, and eIF-4E, known to control cap-dependent translation. In contrast, Trx2 attenuated activities of Akt, p70S6K, and eIF-4E and provoked an increase in mitochondrial reactive oxygen species production. MitoQ, a mitochondria specific antioxidant, reversed HIF-1alpha accumulation as well as Akt activation under hypoxia in Trx2 cells, supporting the notion of translation control mechanisms in affecting HIF-1alpha protein accumulation.
Metabotropic glutamate receptor subtype 7 (mGluR7) belongs to the family of G-protein coupled receptors. mGluR7 is widely distributed in the brain and primarily localized at presynaptic terminals, where it is thought to regulate neurotransmitter release and synaptic plasticity. Studies have shown that the intracellular C-terminal tail of mGluR7 binds a variety of proteins in addition to trimeric G-proteins. These newly identified protein interactions are believed to play a key role in the synaptic targeting and G-protein dependent signaling of mGluR7. Protein interacting with C kinase 1 (PICK1), a PDZ-domain protein, is a strong interaction partner of mGluR7a. In order to investigate the role of PICK1 in the synaptic trafficking and signaling of mGluR7a, a knock-in mouse line in which the interaction of mGluR7a and PICK1 is disrupted was generated. Analysis of the mutant mice by immunocytochemistry and immunoelectron microscopy showed that the synaptic targeting and clustering of mGluR7a was not altered, indicating that PICK1 is not required for mGluR7a receptor membrane trafficking and synaptic localization. However, when the spontaneous synaptic activity of cerebellar granule cell cultures prepared from both wild-type and knock-in mice was monitored, and L-AP4 (400μm) was found to decrease the frequency, but not the amplitude, of spontaneous excitatory currents in wild-type neurons, while no effect of L-AP4 on spontaneous synaptic activity was observed in knock-in neurons. This indicates that PICK1 binding to the C-terminal region of mGluR7a plays an essential role in mGluR7a mediated G-protein signaling. We examined the threshold sensitivity for the convulsant pentetrazole (PTZ) in knock-in mice. It was found that mGluR7a knock-in mice had a greater sensitivity to PTZ than wild-type mice. Moreover, the surface parietal cortex EEG recordings of the mutant mice revealed spontaneous synchronous oscillation, or "spike-and-wave discharges" (SWD), which displayed similar characteristics to absence-like seizures. It was also observed that the knock-in mice responded to pharmacology as human absence epilepsy. These data suggests that the knock-in mice displayed the phenotype of absencelike epilepsy. Furthermore, the behavioral analysis of the mGluR7a knock-in mice showed no deficits in motor coordination, pain sensation, anxiety as well as spatial learning and memory, thus the interaction of mGluR7a and PICK1 appears not to contribute to these physiological processes. Taken together, our data provides evidence for an important role of PICK1 in Gprotein dependent signaling of mGluR7a, whereas PICK1 is not required for synaptic targeting and clustering of mGluR7a. Our results also provide an animal model of absencelike epilepsy generated by disruption of a single mGluR7a-PDZ interaction, thus creating a novel therapeutic target against this neurological disease.
The geometric parameters of the title compound, C8H6N2O·C6H3N3O7, are in the usual ranges. The three nitro groups are almost coplanar with the aromatic picrate ring [dihedral angles 10.2 (2)°, 7.62 (16) and 8.08 (17)°]. The molecular conformation of the picric acid is stabilized by an intramolecular O-H...O hydrogen bond. The phthalazin-1(2H)-one molecules are connected via N-H...O hydrogen bonds, forming centrosymmetric dimers. Key indicators: single-crystal X-ray study; T = 173 K; mean σ(C–C) = 0.002 Å; R factor = 0.034; wR factor = 0.091; data-to-parameter ratio = 11.1.
Sphingosylphosphorylcholine (SPC) is a bioactive lipid that binds to G protein-coupled-receptors and activates various signaling cascades. Here, we show that in renal mesangial cells, SPC not only activates various protein kinase cascades but also activates Smad proteins, which are classical members of the transforming growth factor-β (TGFβ) signaling pathway. Consequently, SPC is able to mimic TGFβ-mediated cell responses, such as an anti-inflammatory and a profibrotic response. Interleukin-1β-stimulated prostaglandin E2 formation is dose-dependently suppressed by SPC, which is paralleled by reduced secretory phospholipase A2 (sPLA2) protein expression and activity. This effect is due to a reduction of sPLA2 mRNA expression caused by inhibited sPLA2 promoter activity. Furthermore, SPC upregulates the profibrotic connective tissue growth factor (CTGF) protein and mRNA expression. Blocking TGFβ signaling by a TGFβ receptor kinase inhibitor causes an inhibition of SPC-stimulated Smad activation and reverses both the negative effect of SPC on sPLA2 expression and the positive effect on CTGF expression. In summary, our data show that SPC, by mimicking TGFβ, leads to a suppression of proinflammatory mediator production and stimulates a profibrotic cell response that is often the end point of an anti-inflammatory reaction. Thus, targeting SPC receptors may represent a novel therapeutic strategy to cope with inflammatory diseases.
GERMAN BANKS ARE HIGHLY SATISFIED WITH THEIR BUSINESS PROCESS OUTSOURCING (BPO) VENTURES. BENEFITS ARE ACHIEVED THROUGH THE COMBINATION OF A CLOSE VENDOR RELATIONSHIP AND A WELL-DEFINED OUTSOURCING CONTRACT. THE OUTSOURCING OF DOMESTIC PAYMENT PROCESSES IS MOST SUCCESSFUL WHEREAS THE OUTSOURCING OF CONSUMER CREDIT PROCESSES STRUGGLES WITH QUALITY IMPROVEMENTS.
Background Today it is widely accepted that plastids are of cyanobacterial origin. During their evolutionary integration into the metabolic and regulatory networks of the host cell the engulfed cyanobacteria lost their independency. This process was paralleled by a massive gene transfer from symbiont to the host nucleus challenging the development of a retrograde protein translocation system to ensure plastid functionality. Such a system includes specific targeting signals of the proteins needed for the function of the plastid and membrane-bound machineries performing the transfer of these proteins across the envelope membranes. At present, most informations on protein translocation are obtained by the analysis of land plants. However, the analysis of protein import into the primitive plastids of glaucocystophyte algae, revealed distinct features placing this system as a tool to understand the evolutionary development of translocation systems. Here, bacterial outer membrane proteins of the Omp85 family have recently been discussed as evolutionary seeds for the development of translocation systems. Results To further explore the initial mode of protein translocation, the observed phenylalanine dependence for protein translocation into glaucophyte plastids was pursued in detail. We document that indeed the phenylalanine has an impact on both, lipid binding and binding to proteoliposomes hosting an Omp85 homologue. Comparison to established import experiments, however, unveiled a major importance of the phenylalanine for recognition by Omp85. This finding is placed into the context of the evolutionary development of the plastid translocon. Conclusion The phenylalanine in the N-terminal domain signs as a prerequisite for protein translocation across the outer membrane assisted by a primitive translocon. This amino acid appears to be optimized for specifically targeting the Omp85 protein without enforcing aggregation on the membrane surface. The phenylalanine has subsequently been lost in the transit sequence, but can be found at the C-terminal position of the translocating pore. Thereby, the current hypothesis of Omp85 being the prokaryotic contribution to the ancestral Toc translocon can be supported.
Background Synchronous neuronal firing has been discussed as a potential neuronal code. For testing first, if synchronous firing exists, second if it is modulated by the behaviour, and third if it is not by chance, a large set of tools has been developed. However, to test whether synchronous neuronal firing is really involved in information processing one needs a direct comparison of the amount of synchronous firing for different factors like experimental or behavioural conditions. To this end we present an extended version of a previously published method NeuroXidence [1], which tests, based on a bi- and multivariate test design, whether the amount of synchronous firing above the chance level is different for different factors.
This is the fourth in a series of publications on Zambian languages and grammar. The intention of the series is to boost the meagre scholarship and availability of educational materials on Zambian languages, which became particularly urgent in 1996, following the decision of the Zambian government to revert to the policy of using local languages as media of instruction. Kaonde (or more correctly Kikaonde) is spoken in the part of the North-Western Province of Zambia to the east of the Kabompo River, in adjacent parts of Mumbwa and Kaoma Districts to the south, and in the Katanga Province of the Democratic Republic of Congo to the North.
Both practitioners and academics agree about the importance of price and its direct influenceon consumers’ purchase decision as well as the company profit. In the reality, we rarely see a
single price for a given product. One visit in a store already shows that consumers face many various prices. This strategy of differential prices allows to increase profit but also improves consumers’ situation and increases welfare. A wide range of various price differentiation mechanisms exists on the market which makes price differentiation a very interesting phenomenon. Additionally, market developments constantly allow for new price differentiation applications. In this work, I research a fascinating topic of price differentiation, its various forms
and new application possibilities in changing market areas.
Clear native electrophoresis and blue native electrophoresis are microscale techniques for the isolation of membrane protein complexes. The Coomassie Blue G-250 dye, used in blue native electrophoresis, interferes with in-gel fluorescence detection and in-gel catalytic activity assays. This problem can be overcome by omitting the dye in clear native electrophoresis. However, clear native electrophoresis suffers from enhanced protein aggregation and broadening of protein bands during electrophoresis and therefore has been used rarely. To preserve the advantages of both electrophoresis techniques we substituted Coomassie dye in the cathode buffer of blue native electrophoresis by non-colored mixtures of anionic and neutral detergents. Like Coomassie dye, these mixed micelles imposed a charge shift on the membrane proteins to enhance their anodic migration and improved membrane protein solubility during electrophoresis. This improved clear native electrophoresis offers a high resolution of membrane protein complexes comparable to that of blue native electrophoresis. We demonstrate the superiority of high resolution clear native electrophoresis for in-gel catalytic activity assays of mitochondrial complexes I–V. We present the first in-gel histochemical staining protocol for respiratory complex III. Moreover we demonstrate the special advantages of high resolution clear native electrophoresis for in-gel detection of fluorescent labeled proteins labeled by reactive fluorescent dyes and tagged by fluorescent proteins. The advantages of high resolution clear native electrophoresis make this technique superior for functional proteomics analyses.
Background The Radical Pair model proposes that magnetoreception is a light-dependent process. Under low monochromatic light from the short-wavelength part of the visual spectrum, migratory birds show orientation in their migratory direction. Under monochromatic light of higher intensity, however, they showed unusual preferences in other directions or axial preferences. To determine whether or not these responses are still controlled by the respective light regimes, European robins, Erithacus rubecula, were tested under UV, Blue, Turquoise and Green light at increasing intensities, with orientation in migratory direction serving as a criterion whether or not magnetoreception works in the normal way. Results Under low light with a quantal flux of 8 times 10 to 15 power quanta s-1 m-2, the birds were well oriented in their seasonally appropriate migratory direction under 424 nm Blue, 502 nm Turquoise and 565 nm Green light, indicating unimpaired magnetoreception. Under 373 nm UV of the same quantal flux, they were not oriented in migratory direction, showing a preference of the east-west axis instead, but they showed excellent orientation in migratory direction under UV of lower intensity. Intensities of above 36 times 10 to 15 power quanta s-1 m-2 of Blue, Turquoise and Green light elicited a variety of responses: disorientation, headings along the east-west axis, headings along the north-south axis or 'fixed' direction tendencies. These responses changed as the intensity was increased from 36 times 10 to the 15 power quanta s-1 m-2 to 54 and 72 times 10 to 15 power quanta s-1 m-2. Conclusion The specific manifestation of responses in directions other than migratory direction clearly depends on the ambient light regime. This implies that although mechanisms normally providing magnetic compass information seem disrupted, processes that are activated by light still control the behavior. It suggests complex interactions between different types of receptors, magnetic and visual. The nature of the receptors involved and details of their connections are not yet known; however, a role of the color cones in the processes mediating magnetic input is suggested.
Since about the year 2000 a hitherto unidentified species of the genus Leiobunum C. L. Koch, 1839, has rapidly invaded central and western Europe. Records are known from The Netherlands (probably the country of first occurrence in Europe), Germany, Austria and Switzerland. This introduced species, until now, mainly inhabits walls of buildings and rocky environments. Adults characteristically aggregate during daytime into groups of up to 1.000 individuals. The species is described and details on its present distribution, habitat preference, phenology and behaviour are presented.
Humans possess a number concept that differs from its predecessors in animal cognition in two crucial respects: (1) it is based on a numerical sequence whose elements are not confined to quantitative contexts, but can indicate cardinal/quantitative as well as ordinal and even nominal properties of empirical objects (e.g. ‘five buses’: cardinal; ‘the fifth bus’: ordinal; ‘the #5 bus’: nominal), and (2) it can involve recursion and, via recursion, discrete infinity. In contrast to that, the predecessors of numerical cognition that we find in animals and human infants rely on finite and iconic representations that are limited to cardinality and do not support a unified concept of number. In this paper, I argue that the way such a unified number concept could evolve in humans is via verbal sequences that are employed as numerical tools, that is, sequences of words whose elements are associated with empirical objects in number assignments. In particular, I show that a certain kind of number words, namely the counting sequences of natural languages, can be characterised as a central instance of verbal numerical tools. I describe a possible scenario for the emergence of such verbal numerical tools in human history that starts from iconic roots and that suggests that in a process of co-evolution, the gradual emergence of counting sequences and the development of an increasingly comprehensive number concept supported each other. On this account, it is language that opened the way for numerical cognition, suggesting that it is no accident that the same species that possesses the language faculty as a unique trait, should also be the one that developed a systematic concept of number.
The catalytic mechanism, electron transfer coupled to proton pumping, of heme-copper oxidases is not yet fully understood. Microsecond freeze-hyperquenching single turnover experiments were carried out with fully reduced cytochrome aa(3) reacting with O(2) between 83 micros and 6 ms. Trapped intermediates were analyzed by low temperature UV-visible, X-band, and Q-band EPR spectroscopy, enabling determination of the oxidation-reduction kinetics of Cu(A), heme a, heme a(3), and of a recently detected tryptophan radical (Wiertz, F. G. M., Richter, O. M. H., Cherepanov, A. V., MacMillan, F., Ludwig, B., and de Vries, S. (2004) FEBS Lett. 575, 127-130). Cu(B) and heme a(3) were EPR silent during all stages of the reaction. Cu(A) and heme a are in electronic equilibrium acting as a redox pair. The reduction potential of Cu(A) is 4.5 mV lower than that of heme a. Both redox groups are oxidized in two phases with apparent half-lives of 57 micros and 1.2 ms together donating a single electron to the binuclear center in each phase. The formation of the heme a(3) oxoferryl species P(R) (maxima at 430 nm and 606 nm) was completed in approximately 130 micros, similar to the first oxidation phase of Cu(A) and heme a. The intermediate F (absorbance maximum at 571 nm) is formed from P(R) and decays to a hitherto undetected intermediate named F(W)(*). F(W)(*) harbors a tryptophan radical, identified by Q-band EPR spectroscopy as the tryptophan neutral radical of the strictly conserved Trp-272 (Trp-272(*)). The Trp-272(*) populates to 4-5% due to its relatively low rate of formation (t((1/2)) = 1.2 ms) and rapid rate of breakdown (t((1/2)) = 60 micros), which represents electron transfer from Cu(A)/heme a to Trp-272(*). The formation of the Trp-272(*) constitutes the major rate-determining step of the catalytic cycle. Our findings show that Trp-272 is a redox-active residue and is in this respect on an equal par to the metallocenters of the cytochrome c oxidase. Trp-272 is the direct reductant either to the heme a(3) oxoferryl species or to Cu (2+)(B). The potential role of Trp-272 in proton pumping is discussed.
Das genetische Material der Zellen besteht aus Molekülketten der Desoxyribonukleinsäure (DNA), die ein Träger der Erbinformation ist. In normalen Körperzellen wird die Erbinformation der DNA in eine andere Molekülkette, die sogenannte Ribonukleinsäure (RNA), übersetzt. Die RNA reguliert die Bildung von neuem Protein in der Zelle. Dass die RNA nicht bloß ein „Stempel“ ist, der die Informationen der DNA weitervermittelt, darin sind sich die Experten heute einig. RNA-Moleküle können Informationen speichern, katalytische Aktivitäten entfalten, sich perfekt tarnen, und sie regulieren auch als Produkt ihre eigene Synthese. Manche Viren enthalten ebenfalls RNA (oder DNA) und können so den Produktionsapparat der Zelle täuschen. Erkenntnisse über die Wechselwirkung dieser RNA mit natürlichen und synthetischen Liganden können zur Suche nach potentiellen Wirkstoffen beitragen. Nukleinsäuren sind lineare Biopolymere von grundlegenden Untereinheiten, die Nukleotide genannt werden und aus Adenin (A), Cytosin (C), Guanin (G), Urazil (U), und Thymin (T) zusammengesetzt sind. Sie sind jedoch in der Lage sich zu falten und so eine Doppel-Helixstruktur auszubilden. Diese besteht größtenteils aus den bekannten "Watson-Crick-Basenpaaren" (G-C und A-U oder A-T), die zur Stabilität der Struktur beitragen, sowie aus den weniger stabilen G-U-Paaren. Durch die Wechselwirkung zwischen verschiedenen Sekundärstrukturelementen entstehen Tertiärstrukturelemente, deren Struktur und Dynamik oft nur schwer experimentell zu bestimmen sind. Fortschritte in der RNA-Strukturanalyse wurden durch Röntgenkristallographie und Kernresonanzspektroskopie (NMR) möglich. Durch die Röntgenkristallographie wurden viele RNA-Eigenschaften festgestellt. Allerdings besteht keine Kristallstruktur für alle mögliche Einzelnfaser-RNA-Haarnadeln, weil diese immer dazu neigen, in eine linearen doppelte Faserform zu kristallisieren, die geringe biologische Bedeutung hat. Außerdem wurde mit Hilfe der NMR-Spektroskopie das dynamische Verhalten von RNA, z.B. Entfaltungsprozesse bei ansteigender Temperatur, beobachtet. Jedoch erlauben diese experimentellen Daten oft keine direkte mikroskopische Beschreibung der molekularen Prozesse. Molekulardynamik (MD)-Simulationen von biologischen Systemen ermöglichen es hingegen, diese Prozesse in atomischem Detail zu untersuchen. Die MD-Simulation beschreibt ein molekulares System auf atomarer Ebene mit Hilfe der klassischen Mechanik. Kräfte werden von empirischen Potentialen abgeleitet. Sie liefern zeitabhängige Trajektorien, die sich aus den Newton'schen Bewegungsgleichungen ergeben. Durch verbesserte Computerleistung, bessere Kraftfelder, und neu entwickelte genauere Methoden stimmen heutzutage MD-Simulationen von RNA mit experimentellen Daten immer besser überein. In meiner Doktorarbeit wurden MD-Simulationen durchgeführt um die Dynamik, die Struktur und insbesondere die Stabilität von RNA-Hairpins theoretisch zu beschreiben, um so ein erweitertes Verständnis für die dynamischen Vorgänge zu erhalten. Auch der SFB 579 der Universität Frankfurt beschäftigt sich mit RNA-Systemen. Erforscht wird unter anderem der D-Loop des Coxsackievirus B3 (CVB3), der Virenmyocarditis verursacht. Die Interpretation dieser experimentellen Daten wird durch MD-Simulation möglich. In dieser Arbeit wurden das GROMACS Software-Paket und das AMBER Kraftfeld verwendet, um das strukturelle, dynamische und thermische Verhalten der RNA-Hairpins mit Hilfe von MD-Simulationen auf atomarer Ebene zu untersuchen. Betrachtet wurden die 14-mer RNA-Hairpins, uCACGg und cUUCGg. Die verfügbaren NMR-Strukturen zeigen, dass das uCACGg-Tetraloop auffallend ähnlich in der gesamten Geometrie und den Wasserstoffbindungen zu der experimentellen Struktur des cUUCGg-Tetraloop ist, obwohl die schließende Basenpaarsequenz der beiden Tetraloops unterschiedlich sind. Trotz beachtlicher struktureller Ähnlichkeit unterscheiden sich allerdings die uCACGg und cUUCGg Tetraloops in Funktionalität und Thermostabilität. Zunächst orientiert sich unser erstes Bemühen an der Frage nach einem guten Modell für RNA-Hairpins und Simulationsbedingungen, um die zu untersuchenden RNA-Hairpins in Wasser möglichst realitätsnah zu simulieren. Erstens werden drei Versionen des biomolekularen AMBER-Kraftfelds geprüft, indem man die 60 ns Simulationen des 14-mer uCACGg-Hairpins durchführt. Die simulierten strukturellen Eigenschaften und Atomfluktuationen zeigen hohe Ähnlichkeiten in den drei Kraftfeldern. Darüber hinaus stimmen die von MD-Simulationen berechneten Atomkernabstände mit den experimentellen NMR-Daten gut überein. Die gute Übereinstimmung zwischen den Simulationen und den strukturellen NMR Daten belegt die Fähigkeit des AMBER-Kraftfelds zur Beschreibung der strukturellen Eigenschaft von kleinen RNA-Hairpins. Anschließend werden die Einflüsse der Methoden, welche die langreichweitigen, elektrostatischen Wechselwirkungen beschreiben, auf die strukturellen Eigenschaften untersucht. Insbesondere werden die Ergebnisse der Reaktionfeld-Methode mit denen der Particle Mesh Ewald (PME)-Methode verglichen. Es zeigt sich, dass die PME-Methode die elektrostatischen Wechselwirkungen am besten beschreibt, auch wenn die Simulationen der beiden Methoden Ähnlichkeit in der Struktur-Stabilität und der Atomfluktuation bei niedriger Natriumkonzentration aufweisen. Drittens wird der Kationseffekt auf die RNA-Stabilität untersucht. Betrachtet wurden zwei unterschiedliche Kationen (ein- und zweiwertig) und verschiedene Konzentrationen. Die Simulationen weisen darauf hin, dass sich die Metallionen in der Affinität zum RNA-Hairpin unterscheiden, wenn Na+ und/oder Mg2+ als Gegenionen verwendet werden. Weiterhin wird gezeigt, dass sich die bevorzugten Positionen der Na+-Ionen in der großen Furche (major groove) des RNA-Hairpins befinden. Insbesondere die Anlagerungsort der Na+-Ionen liegen in der Nähe des schließenden Basenpaar U5-G10. Im Vergleich zu Na+-Ionen lagern sich Mg2+-Ionen sowohl an die RNA-Basen U3, A4-U11, und die Phosphat-Gruppe, als auch an das schließenden Basenpaar U5-G10 an. Bestätigt werden die Modelle und Simulationsbedingungen durch den Vergleich von Parametern, die sowohl experimentell als auch durch Simulationen ermittelt werden können. Ferner erlauben MD-Simulationen Einblick in das System, indem sie detallierte Konformations- und andere Verteilungen liefern. In der vorliegenden Arbeit wurden die Einflüsse der Loopsequenz und des schließenden Basenpaares auf die Verteilung der Konformationen, der internen Bewegungen, und auf die Thermostabilität von zwei RNA-Hairpins mit Hilfe dieser Modelle untersucht. Zunächst wurden die strukturellen Eigenschaften bei Raumtemperatur ausgewertet. Die starken strukturellen Ähnlichkeiten und die gute Übereinstimmung mit NMR-Daten bestätigen die Hypothese, dass die zwei Tetraloops zur gleichen “erweiterten” RNA-Familie gehören. Diese zwei Hairpins haben ähnliche Lösemittelzugängliche Oberflächen (solvent accessible surface), wobei deren Lösemittel zugänglichen funktionellen Gruppen unterschiedlich sind. Weiterhin weist das uCACGg-Hairpin eine stärkere Tendenz auf Wasserstoffe abzugeben als das cUUCGg-Hairpin, was in den unterschiedlichen Bindungsaffinitäten zwischen diesen Hairpins und der viralen Protease begründet liegt. Darüber hinaus wurde der Faltungs- und Entfaltungsprozess mit Hilfe der Replica-Exchange-Molekulardynamik-Simulationen untersucht. Diese Untersuchung zielt auf das bessere Verständnis der unterschiedlichen Thermostabilität der Hairpins, indem sie die möglichen Zwischenprodukte im atomaren Detail liefern. Sowohl experimentell als auch von den MD-Simulationen ergibt sich eine Differenz in den Schmelztemperaturen der beiden Hairpins von ungefähr 20 K. Allerdings sind die von MD beobachteten Schmelztemperaturen 20 % höher als die von Experiment zu ansehende Wert. Die Ergebnisse machen deutlich, dass die Schmelztemperaturdifferenz nicht auf die Unterschiede in der Sequenz, in der Struktur, oder in der Dynamik der Loops zurückführen sind, sondern auf die Unterschiede der Basenpaaren in den Stämmen. Weiterhin wird gezeigt, dass sich das uCACGg-Hairpin einerseits kooperativ entfaltet, und die Entfaltung des cCACGg-Hairpins anderseits weniger kooperativ stattfindet. Um die schnelle interne Dynamik der uCACGg- und cUUCGg-Hairpins zu untersuchen, erlauben die Simulationen von 50 ns eine akurate Beschreibung der schnellen internen Bewegung der RNA-Hairpin, obwohl der den Hairpins zugängliche Konformationsraum nicht vollständig abgedeckt wird. Die NMR-Relaxationsparameter, die mit Hilfe der MD-Simulationen zurückgerechnet wurden, bestätigen das Modell und die Simulationsbedingungen der MD-Simulationen. Im Hinblick auf die Übereinstimmung kann man den besten Ansatz zur Berechnung der NMR-Ordnungsparameter bestimmen. In dieser Arbeit wurden drei verschiedene Ansätze angewandt, nämlich das Fitting von 100 ps auf modellfreiem Ansatz nach Lipari-Szabo, equilibrium average, und das Gaussian Axial Fluctuation (GAF)-Modell. Die zwei letzteren können nur qualitativ mit den experimentellen Daten übereinstimmen. Die NMR-Ordnungsparameter können mit Hilfe des Modells von Lipari-Szabo richtig ermittelt werden, wenn sich die interne Bewegung in kleineren Zeitskalen als zur Gesamtbewegung vollzieht. Vorausetzung für die Berechnung dieses Modells ist aber, dass das Fitting der internen Korrelationsfunktionen nur auf den ersten Teil von 100 ps der Korrelationsfunktionen eingesetzt wird. Die berechneten Ordnungsparameter deuten auf ein unterschiedliches Verhalten der beiden Hairpins besonders im Loop-Bereich hin. Die konformationelle Umordnung, die beim UUCG-Loop beobachtet wurde, tritt beim CACG-Loop nicht ein. Zusammenfassend lässt sich sagen, dass es durch den Einsatz von MD Simulationen ermöglicht wird, die strukturellen und dynamischen Eigenschaften der RNA-Systeme auf atomarer Ebene zu untersuchen. Als Schlussfolgerung zeigt diese Doktorarbeit, dass sich die Studie der konformationell Dynamik der RNA-Systeme durch die Kombination aus MD-Simulation und NMR-Spektroskopie sowie der Leistungsfähigkeit der MD-Simulationen, die die interne Bewegungen deutlich beschreiben können, untersuchen lässt.
Namibia is known to be the most arid country south of the Sahara. Average annual rainfall is not only relatively low in most parts of the country, it is also highly variable. Only 8 per cent of the country receives enough rain during a normal rainy season to practice rainfed cultivation. At the same time between 60 per cent and 70 per cent of the population depend on subsistence agro-pastoralism in non-freehold or communal areas. Against the background of rising unemployment, the livelihoods of the majority of these people are likely to depend on natural resources in the foreseeable future.
Natural resources generally are under considerable strain. As the rural population increases, so is the demand for natural resources, land and water specifically. Dependency on subsistence farming which is the result of large scale rural poverty exacerbates the problem. Large parts of the country are stocked injudiciously, resulting in overgrazing and water is frequently overabstracted, leading to declining water tables (MET 2005: 2).
Unequal access to both land and water has prompted government to introduce reforms in these sectors. These reforms were guided by the desire to manage resources more sustainably while providing more equal access to them. In terms of NDP 2, sustainability means to use natural resources in such a way so as not to ‘compromise the ability of future generations to make use of these resources’ (NDP 2: 595).
Immediately after Independence government started reform processes in the land and water sectors. However, these reforms have happened at different paces and largely independent of each other. Increasingly policy makers and development practitioners realised that land and water management needed to be integrated, as decisions about land management and land use options had a direct impact on water resources. Conversely the availability of water sets the parameters for what is possible in terms of agricultural production and other land uses. The north-central regions face a particular challenge in this regard as the region carries more livestock than it can sustain in the long run. At the same time, close to half the households do not own any livestock. Access to livestock by these households would improve their abilities to cultivate their land more efficiently in order to feed themselves and thus reduce poverty levels.
But livestock are a major consumer of water. In 2000 livestock was consuming more water than the domestic sector. The figures were 77Mm3/a and 67Mm3/a respectively (Urban et al. 2003 Annex 7: 2). This situation has prompted a Project Progress Report on the Namibia Water Resources Management Review in 2003 to conclude that Given the extreme water scarcity in most parts of the country, land and water issues are closely linked. It therefore seems indispensable to mutually adjust land – and water sector reform processes (Ibid: 20).
This paper will briefly look at four institutions that are central to land and water management with a view to assess the extent to which they interact. These are Communal Land Boards, Water Point Committees, Traditional Authorities and Regional Councils. A discussion of relevant policy documents and legislative instruments will investigate whether the existing policy framework
provides for an integrated approach or not. Before doing this, it appears sensible to briefly situate these four institutions in the wider maze of institutions operating at regional and
sub-regional level. All these institutions – important as they are in the quest to improve participation at the regional and sub-regional level – are competing for time and input fros mallscale farmers.
The cytochrome bc1 complex is a dimeric enzyme of the inner mitochondrial membrane that links electron transfer from ubiquinol to cytochrome c by a protonmotive Q cycle mechanism in which ubiquinol is oxidized at one center in the enzyme, referred to as center P, and ubiquinone is rereduced at a second center, referred to as center N. To better understand the mechanism of ubiquinol oxidation, we have examined catalytic activities and pre-steady-state reduction kinetics of yeast cytochrome bc1 complexes with mutations in cytochrome b that we expected would affect oxidation of ubiquinol. We mutated two residues thought to be involved in proton conduction linked to ubiquinol oxidation, Tyr132 and Glu272, and two residues proposed to be involved in docking ubiquinol into the center P pocket, Phe129 and Tyr279. Substitution of Phe129 by lysine or arginine yielded a respiration-deficient phenotype and lipid-dependent catalytic activity. Increased bypass reactions were detectable for both variants, with F129K showing the more severe effects. Substitution with lysine leads to a disturbed coordination of a b heme as deduced from changes in the midpoint potential and the EPR signature. Removal of the aromatic side chain in position Tyr279 lowers the catalytic activity accompanied by a low level of bypass reactions. Pre-steady-state kinetics of the enzymes modified at Glu272 and Tyr132 confirmed the importance of their functional groups for electron transfer. Altered center N kinetics and activation of ubiquinol oxidation by binding of cytochrome c in the Y132F and E272D enzymes indicate long range effects of these mutations.
Background Identification and evaluation of surface binding-pockets and occluded cavities are initial steps in protein structure-based drug design. Characterizing the active site's shape as well as the distribution of surrounding residues plays an important role for a variety of applications such as automated ligand docking or in situ modeling. Comparing the shape similarity of binding site geometries of related proteins provides further insights into the mechanisms of ligand binding. Results We present PocketPicker, an automated grid-based technique for the prediction of protein binding pockets that specifies the shape of a potential binding-site with regard to its buriedness. The method was applied to a representative set of protein-ligand complexes and their corresponding apo-protein structures to evaluate the quality of binding-site predictions. The performance of the pocket detection routine was compared to results achieved with the existing methods CAST, LIGSITE, LIGSITEcs, PASS and SURFNET. Success rates PocketPicker were comparable to those of LIGSITEcs and outperformed the other tools. We introduce a descriptor that translates the arrangement of grid points delineating a detected binding-site into a correlation vector. We show that this shape descriptor is suited for comparative analyses of similar binding-site geometry by examining induced-fit phenomena in aldose reductase. This new method uses information derived from calculations of the buriedness of potential binding-sites. Conclusions The pocket prediction routine of PocketPicker is a useful tool for identification of potential protein binding-pockets. It produces a convenient representation of binding-site shapes including an intuitive description of their accessibility. The shape-descriptor for automated classification of binding-site geometries can be used as an additional tool complementing elaborate manual inspections.
The removal of apoptotic cells (AC) can be regarded as an integral component of the program to terminate inflammation. Clearance of AC by professional phagocytes such as macrophages induces an anti-inflammatory phenotype in the latter ones. Anti-inflammatory or M2 polarization is also observed in macrophages infiltrating certain human tumors. These tumor-associated macrophages (TAM) contribute actively to tumor progression by promoting immune evasion, angiogenesis and tumor cell survival. The aim of my Ph.D. thesis was to approach the mechanisms as well as the characteristics of macrophage phenotype alterations induced by AC, and to elucidate a possible connection between tumor cell apoptosis and TAM generation. In the first part of my studies, I investigated the impact of AC on macrophage viability. I could show that macrophage survival against pro-apoptotic agents increased after the interaction with AC. Protection of macrophages against cell death required activation of phosphatidylinositol-3 kinase (PI3K), extracellular signal-regulated kinase 1/2 (ERK1/2) and Ca2+ signaling, and correlated with Bcl-XL and Bcl-2 up-regulation as well as Ser136-Bad phosphorylation. Unexpectedly, neither phagocytosis nor binding of apoptotic debris to the phagocyte was necessary to induce protection. AC released the bioactive lipid sphingosine-1-phosphate (S1P), dependent on sphingosine kinase (SphK) 2, as a survival messenger. These data indicated an active role of AC in preventing cell destruction in their neighborhood. My next aim was to elucidate the mechanism of S1P production by AC. During cell death, SphK 2 was cleaved at its N-terminus by caspase-1. Thereupon, the truncated but enzymatically active fragment of SphK 2 was released from cells. This release was coupled to phosphatidylserine exposure, a hallmark of apoptosis and a crucial signal for the phagocyte/apoptotic cell interaction. Thus, I observed a link between common signaling events during apoptosis and the extracellular production of S1P, which is known to affect immune cell attraction and polarization as well as angiogenesis in cancer. In the next part of my studies, I asked for a correlation between tumor cell apoptosis and TAM polarization. During co-culture of human macrophages with human breast cancer carcinoma cells (MCF-7), the latter ones were killed, while macrophages acquired an alternatively activated phenotype. This was characterized by decreased tumor necrosis factor (TNF)-α; and interleukin (IL)-12-p70 production, but increased formation of IL-8 and IL-10. Alternative macrophage activation required tumor cell death, because a co-culture with apoptosis-resistant colon carcinoma cells (RKO) or Bcl-2-overexpressing MCF-7 cells failed to induce phenotype alterations. These phenotype alterations were also achieved with conditioned media from apoptotic tumor cells, which again argued for a soluble factor being involved. Knock-down of SphK2, but not SphK1, to attenuate S1P formation in MCF-7 cells, repressed the otherwise observed alternative macrophage polarization during co-culture. Furthermore, macrophage polarization achieved by tumor cell apoptosis or substitution of authentic S1P was characterized by suppression of pro-inflammatory nuclear factor (NF)-κB DNA binding. These findings suggested that tumor cell apoptosis-derived S1P contributes to the macrophage polarization present in human tumors. To validate these in vitro data, I used an in vivo tumor model to clarify the relevance of SphK2 and S1P in tumor development. The growth of, as well as blood vessel infiltration into SphK2 knock-down MCF-7 (MCF-7-siSphK2) xenografts in nude mice was markedly decreased in comparison to control MCF-7 xenografts. In contrast, macrophage infiltration was similar or even more pronounced. These data provided a first hint for an in vivo role of SphK2-derived S1P in macrophage polarization associated with tumor promotion. In summary, these data indicate a new mechanism how AC themselves shape macrophage polarization, which results in the termination of inflammatory responses and macrophage survival. Furthermore, my studies present evidence that human tumors may utilize this mechanism to foster growth via increased angiogenesis.
Background Objects in our environment are often partly occluded, yet we effortlessly perceive them as whole and complete. This phenomenon is called visual amodal completion. Psychophysical investigations suggest that the process of completion starts from a representation of the (visible) physical features of the stimulus and ends with a completed representation of the stimulus. The goal of our study was to investigate both stages of the completion process by localizing both brain regions involved in processing the physical features of the stimulus as well as brain regions representing the completed stimulus. Results Using fMRI adaptation we reveal clearly distinct regions in the visual cortex of humans involved in processing of amodal completion: early visual cortex - presumably V1 - processes the local contour information of the stimulus whereas regions in the inferior temporal cortex represent the completed shape. Furthermore, our data suggest that at the level of inferior temporal cortex information regarding the original local contour information is not preserved but replaced by the representation of the amodally completed percept. Conclusion These findings provide neuroimaging evidence for a multiple step theory of amodal completion and further insights into the neuronal correlates of visual perception.
Splicing of pre-mRNA is a critical step in mRNA maturation and disturbances cause several genetic disorders. We apply the synthetic tetracycline (tc)-binding riboswitch to establish a gene expression system for conditional tc-dependent control of pre-mRNA splicing in yeast. Efficient regulation is obtained when the aptamer is inserted close to the 5′splice site (SS) with the consensus sequence of the SS located within the aptamer stem. Structural probing indicates limited spontaneous cleavage within this stem in the absence of the ligand. Addition of tc leads to tightening of the stem and the whole aptamer structure which probably prevents recognition of the 5′SS. Combination of more then one aptamer-regulated intron increases the extent of regulation leading to highly efficient conditional gene expression systems. Our findings highlight the potential of direct RNA–ligand interaction for regulation of gene expression.
Einleitung: Es wurden die Leistungen beim Verstehen im Störgeräusch von CI-Patienten mit unterschiedlichen Implantattypen verglichen. Der TEMPO+ Sprachprozessor (MED-EL, Implantat C40+) verwendet ein Mikrophon mit Kugelcharakteristik, während der ESPrit 3G Prozessor (COCHLEAR, Implantat CI24R(CA)) mit einem frontal ausgelegten Richtmikrophon ausgestattet ist.
Methode: Von den zwei untersuchten Patientengruppen (n=20) war eine mit einem C40+ Implantat (MED-EL, Innsbruck), die andere mit dem CI24RCA Implantat (Cochlear, Melbourne) versorgt. Es wurde die S0N180 Lautsprecheranordnung im Freifeld für den HSM-Test (Hochmair, Schulz und Moser, 1997) und die S0N0 Anordnung für den Oldenburger Satztest (Wagener, Kühnel und Kollmeier, 1999) verwendet. Der OLSA wurde mit festem Sprachpegel (65 dB SPL) und adaptivem Störgeräusch durchgeführt. Der HSM-Satztest wurde bei Signal-/ Rauschverhältnissen von 15 dB, 10 dB, 5 dB, 0dB sowie ohne Störgeräusch durchgeführt.
Ergebnisse: Im HSM-Satztest (S0N180) wurden signifikant bessere Leistungen beim Verstehen im Störgeräusch für die Gruppe mit dem Richtmikrophon nachgewiesen. Im Oldenburger Satztest zeigten sich keine signifikanten Unterschiede.
Schlussfolgerungen: Im Vergleich zu einem Mikrophon mit Kugelcharakteristik verbessert ein Richtmikrophon das Sprachverstehen in Situationen, in denen die Sprache frontal und der Störschall von hinten dargeboten werden.
Adverse events triggered by non-steroidal anti-inflammatory drugs (NSAIDs) are among the most common drug-related intolerance reactions in medicine; they are possibly related to inhibition of cyclooxygenase-1. Coxibs, preferentially inhibiting cyclooxygenase-2, may therefore represent safe alternatives in patients with NSAID intolerance. We reviewed the literature in a systematic and structured manner to identify and evaluate studies on the tolerance of coxibs in patients with NSAID intolerance. We searched MEDLINE (1966–2006), the COCHRANE LIBRARY (4th Issue 2006) and EMBASE (1966–2006) up to December 9, 2006, and analysed all publications included using a predefined evaluation sheet. Symptoms and severity of adverse events to coxibs were analysed based on all articles comprising such information. Subsequently, the probability for adverse events triggered by coxibs was determined on analyses of double-blind prospective trials only. Among 3,304 patients with NSAID intolerance, 119 adverse events occurred under coxib medication. All adverse events, except two, have been allergic/urticarial in nature; none was lethal, but two were graded as life-threatening (grade 4). The two non-allergic adverse events were described as a grade 1 upper respiratory tract haemorrhage, and a grade 1 gastrointestinal symptom, respectively. In 13 double-blind prospective studies comprising a total of 591 patients with NSAID intolerance, only 13 adverse reactions to coxib provocations were observed. The triggering coxibs were rofecoxib (2/286), celecoxib (6/208), etoricoxib (4/56), and valdecoxib (1/41). This review documents the good tolerability of coxibs in patients with NSAID intolerance, for whom access to this class of drugs for short-term treatment of pain and inflammation is advantageous.
There is no question about charity in Islam: Allah himself has ordered almsgiv-ing: "Narrated Anas bin Malik: … The man further said, 'I ask you by Allah. Has Allah ordered you to take zakat from our rich people and distribute it amongst our poor people?' The Prophet replied, 'By Allah, yes'." The fundamental relevance of Islamic charity, zakat and sadaqa3, roots in the Muslim understanding of God. According to the proper message of Mohammed the first and primary name and quality of God is rahman and rahim4. Allah is - so to speak – rahman, the life giving uterus, rahim. Like the uterus he gives life to the men without any pre-condition. Life is a gift free of charge not a reward for something. ...
Fragmented Melodies
(2007)
Applying an investment perspective to higher education, the paper presents detailed empirical evidence on the rate of return to higher education and its determinants. Employing a sample of 17,180 higher education graduates derived from the German Labor Force Survey 2004, we show considerable variation in the rates of return to higher education across the different subjects, with some subjects on average not representing attractive private investments from an economic point of view. We find that the decision what to study is worth several hundred thousand Euros. Applying regression analysis, we find gender- and degree-specific return advantages only in certain subjects. Comparing the return of an investment in higher education and the production cost of higher education, we show that more expensive subjects (apart from Medicine) yield a lower return. When considering the cost of study, the overall order of attractiveness of the different forms of education remains stable, but the investment in further subjects is no longer clearly attractive. Keywords: Returns to Education, Human Capital, Higher Education Earnings Capacity.
The pseudoparticle approach is a numericalmethod to compute path integrals without discretizing spacetime. The basic idea is to consider only those field configurations, which can be represented as a linear superposition of a small number of localized building blocks (pseudoparticles), and to replace the functional integration by an integration over the pseudoparticle degrees of freedom. In previous papers we have successfully applied the pseudoparticle approach to SU(2) Yang-Mills theory. In this work we discuss the inclusion of fermionic fields in the pseudoparticle approach. To test our method, we compute the phase diagram of the 1+1-dimensional Gross-Neveu model in the large-N limit as well as the chiral condensate in the crystal phase.
Background The synchrony hypothesis postulates that precise temporal synchronization of different pools of neurons conveys information that is not contained in their firing rates. The synchrony hypothesis had been supported by experimental findings demonstrating that millisecond precise synchrony of neuronal oscillations across well separated brain regions plays an essential role in visual perception and other higher cognitive tasks [1]. Albeit, more evidence is being accumulated in favour of its role as a binding mechanism of distributed neural responses, the physical and anatomical substrate for such a dynamic and precise synchrony, especially zero-lag even in the presence of non-negligible delays, remains unclear. Here we propose a simple network motif that naturally accounts for zero-lag synchronization for a wide range of temporal delays [3]. We demonstrate that zero-lag synchronization between two distant neurons or neural populations can be achieved by relaying the dynamics via a third mediating single neuron or population. Methods We simulated the dynamics of two Hodgkin-Huxley neurons that interact with each other via an intermediate third neuron. The synaptic coupling was mediated through alpha-functions. Individual temporal delays of the arrival of pre-synaptic potentials were modelled by a gamma distribution. The strength of the synchronization and the phase-difference between each individual pairs were derived by cross-correlation of the membrane potentials. Results In the regular spiking regime the two outer neurons consistently synchronize with zero phase lag irrespective of the initial conditions. This robust zero-lag synchronization naturally arises as a consequence of the relay and redistribution of the dynamics performed by the central neuron. This result is independent on whether the coupling is excitatory or inhibitory and can be maintained for arbitrarily long time delays (see Fig. 1). Conclusion We have presented a simple and extremely robust network motif able to account for the isochronous synchronization of distant neural elements in a natural way. As opposed to other possible mechanisms of neural synchronization, neither inhibitory coupling, gap junctions nor precise tuning of morphological parameters are required to obtain zero-lag synchronized neuronal oscillation.
We adopt Markert and Nissim (2005)’s approach of using the World Wide Web to resolve cases of coreferent bridging for German and discuss the strength and weaknesses of this approach. As the general approach of using surface patterns to get information on ontological relations between lexical items has only been tried on English, it is also interesting to see whether the approach works for German as well as it does for English and what differences between these languages need to be accounted for. We also present a novel approach for combining several patterns that yields an ensemble that outperforms the best-performing single patterns in terms of both precision and recall.
We investigate methods to improve the recall in coreference resolution by also trying to resolve those definite descriptions where no earlier mention of the referent shares the same lexical head (coreferent bridging). The problem, which is notably harder than identifying coreference relations among mentions which have the same lexical head, has been tackled with several rather different approaches, and we attempt to provide a meaningful classification along with a quantitative comparison. Based on the different merits of the methods, we discuss possibilities to improve them and show how they can be effectively combined.
Mutual grooming in two genera of silvanid beetles is described, and appears to be the first report of this behavior in the order Coleoptera. In Uleiota debilis (LeConte), allogrooming recipients were either stationary or moved away during the acts, without solicitation or facilitation. In Nausibius major Zimmermann, allogrooming was much more extensive and the individual being groomed appeared to facilitate the process by immobility or by changes in posture, there were no recognizable sexual overtones, no solicitations, and no avoidance movements. Gregarious behaviors of some other silvanid beetles are reviewed.
University 2.0
(2007)
The major challenge facing universities in the next decade is to reinvent themselves as information organizations. Universities are, at their core, organizations that cultivate knowledge, seeking both to create new knowledge and to preserve and convey existing knowledge, but they are remarkably inefficient and therefore ineffective in the way that they leverage their own information resources to advance that core activity. This talk will explore ways that the university could learn from what is now widely called "Web 2.0" -- a term that is meant to identify a shift in emphasis from the computer as platform to the network as platform, from hardware to data, from the wisdom of the expert to the wisdom of crowds, and from fixity to remixability.
Background: Models of isolated and perfused kidneys are used to study the effects of drugs, hazardous or toxic substances on renal functions. Since physiological and morphological parameters of small laboratory animal kidneys are difficult to compare to human renal parameters, porcine kidney perfusion models have been developed to simulate closer conditions to the human situation, but exact values of renal parameters for different collection and perfusion conditions have not been reported so far. If the organs could be used out of regular slaughtering processes animal experiments may be avoided.
Methods: To assess renal perfusion quality, we analyzed different perfusion settings in a standardized model of porcine kidney hemoperfusion with organs collected in the operating theatre (OP: groups A-D) or in a public abattoir (SLA: group E) and compared the data to in vivo measurements in living animals (CON). Experimental groups had defined preservation periods (0, 2 and 24 hrs), one with additional albumin in the perfusate (C) for edema reduction.
Results: Varying perfusion settings resulted in different functional values (mean +/- SD): blood flow (RBF [ml/min*100 g]: (A) 339.9 +/- 61.1; (C) 244.5 +/- 53.5; (D) 92.8 +/- 25.8; (E) 153.8 +/- 41.5); glomerular filtration (GFR [ml/min*100 g]: (CON) 76.1 +/- 6.2; (A) 59.2 +/- 13.9; (C) 25.0 +/- 10.6; (D) 1.6 +/- 1.3; (E) 16.3 +/- 8.2); fractional sodium reabsorption (RFNa [%] (CON) 99.8 +/- 0.1; (A) 82.3 +/- 8.1; (C) 86.8 +/- 10.3; (D) 38.4 +/- 24.5; (E) 88.7 +/- 5.8). Additionally the tubular coupling-ratio of Na-reabsorption/O2-consumption was determined (TNa/O2-cons [mmol-Na/mmol- O2] (CON) 30.1; (A) 42.0, (C) 80.6; (D) 17.4; (E) 23.8), exhibiting OP and SLA organs with comparable results.
Conclusion: In the present study functional values for isolated kidneys with different perfusion settings were determined to assess organ perfusion quality. It can be summarized that the hemoperfused porcine kidney can serve as a biological model with acceptable approximation to in vivo renal physiology, also if the organs originate from usual slaughtering processes.
Background: Phototrophy of the extremely halophilic archaeon Halobacterium salinarum was explored for decades. The research was mainly focused on the expression of bacteriorhodopsin and its functional properties. In contrast, less is known about genome wide transcriptional changes and their impact on the physiological adaptation to phototrophy. The tool of choice to record transcriptional profiles is the DNA microarray technique. However, the technique is still rarely used for transcriptome analysis in archaea. Methodology/Principal Findings: We developed a whole-genome DNA microarray based on our sequence data of the Hbt. salinarum strain R1 genome. The potential of our tool is exemplified by the comparison of cells growing under aerobic and phototrophic conditions, respectively. We processed the raw fluorescence data by several stringent filtering steps and a subsequent MAANOVA analysis. The study revealed a lot of transcriptional differences between the two cell states. We found that the transcriptional changes were relatively weak, though significant. Finally, the DNA microarray data were independently verified by a real-time PCR analysis. Conclusion/Significance: This is the first DNA microarray analysis of Hbt. salinarum cells that were actually grown under phototrophic conditions. By comparing the transcriptomics data with current knowledge we could show that our DNA microarray tool is well applicable for transcriptome analysis in the extremely halophilic archaeon Hbt. salinarum. The reliability of our tool is based on both the high-quality array of DNA probes and the stringent data handling including MAANOVA analysis. Among the regulated genes more than 50% had unknown functions. This underlines the fact that haloarchaeal phototrophy is still far away from being completely understood. Hence, the data recorded in this study will be subject to future systems biology analysis.
It is commonplace to assert that the Book of Genesis in the Old Testament is based on an androcentric position. Although critics have tried to introduce some sort of female empowerment by reassessing various biblical stories (cf. Savina Teubal, 1984), Genesis remains a man's realm with only a limited female perspective. The case of Dinah's rape by Shechem in Genesis 34 illustrates the marginality of womanhood in the biblical world and theology. The pericope tells us that, while the Israelites are settled near the Hivite city of Shechem in Canaan, Jacob's and Leah's daughter Dinah goes out of the Israelite camp. She is raped by Shechem, the prince of the eponymous city, who then abducts her and makes her one of his household. A deal is concluded by Jacob's sons and the Shechemites, according to which the situation can be made legitimate through marriage if the men of Shechem circumcise themselves. While the Shechemites are weak at er the surgery, the Israelites sack the city, kill all the males and take Dinah back.
Modern retellings of the Flood pericope (Genesis 6–8) depend on the age of the targeted audience. Writing for adults, Wolfdietrich Schnurre, Brigitte Schär, Timothy Findley, and Anne Provoost ask whether universal annihilation can be justified. Their criticism of the divine notion that evil is universal and indiscriminate collective punishment is therefore justified, reveals values that are incompatible with those informing the original biblical narrative. However much modernity is aware that myths are symbolic, it apparently cannot assimilate their ethics without a critical reassessment. In this, modern writers rely on the realistic premises of modern novelistic narration. In contrast, modern retellings of the Flood story for children appear to be far more prepared to accept the ancient value system underlying the biblical narrative. Books for younger audiences seem to be much more comfortable with the notion of generalized evil and global punishment than works for adults. This becomes particularly striking in a number of picture books about Noah's ark. The narrative stance of writers ultimately depends on the way they perceive adulthood and childhood.
Siegfried Lenz's novel "Deutschstunde" is analyzed on the basis of work conducted by two American psychologists: Stanley Milgram and Lawrence Kohlberg. The concept of duty and obedience to authority are considered as social phenomena that go beyond personal disposition. The article uses Milgram's famous obedience experiment in order to consider the literary depiction of psychological processes underlying compliance with orders to commit reprehensible acts. A comparison is made between Jens Jepsen, the fictional obedient policeman in "Deutschstunde", and Paul Grueninger, a real policeman in wartime Switzerland, who refused to follow orders and saved many refugees at the Swiss-Austrian border.
This essay deals with two retellings of Genesis: Thomas Mann's "Joseph and his brothers" and Anita Diamant's "The red tent". Both authors note the presence of implicit pagan tendencies among the women of Jacob's clan (Gen 31:19; 35:2) and develop this subtext for their respective ideological purposes. Thomas Mann creates a dichotomy between the backwardness of the pagan female realm and the progressive nature of the monotheistically-oriented patriarchs. The path toward modern humanist values comes from the likes of Jacob and Joseph rather than Rachel and Leah in Mann's novel. Anita Diamant, on the other hand, adopts the opposite attitude, namely, that the paganism of Rachel, Leah, as well as other women in Jacob's family, is a humane and natural form of spirituality in contrast to the bloodthirsty Yahwism of Jacob and his sons. The latter point is illustrated by the sacking of Shechem. In order to question the patriarchal stance of the Old Testament Diamant reverses the key values informing the theology of the Bible. Thus, in "The red tent" Jacob's wives venerate the Ashera in particular. The latter constitutes a challenge to the stance of the Deuteronomic History where the cult of the Ashera is viewed as a key reason behind God's decision to let the Babylonians destroy the Southern Kingdom of Judah. And since Mann's novel upholds the patriarchal spirit of the biblical text, Diamant enters into debate with the continuity of female disempowerment which reaches all the way from Genesis to "Joseph and his brothers".
Defects in podocyte signaling are the basis of many inherited glomerular diseases leading to glomerulosclerosis. CD2-associated protein (CD2AP) is highly expressed in podocytes and is considered to play an important role in the maintenance of the glomerular slit diaphragm. Mice deficient for CD2AP (CD2AP(-/-)) appear normal at birth but develop a rapid onset nephrotic syndrome at 3 weeks of age. We demonstrate that impaired intracellular signaling with subsequent podocyte damage is the reason for this delayed podocyte injury in CD2AP(-/-) mice. We document that CD2AP deficiency in podocytes leads to diminished signal initiation and termination of signaling pathways mediated by receptor tyrosine kinases (RTKs). In addition, we demonstrate that CIN85, a paralog of CD2AP, is involved in termination of RTK signaling in podocytes. CIN85 protein expression is increased in CD2AP(-/-) podocytes in vitro. Stimulation of CD2AP(-/-) podocytes with various growth factors, including insulin-like growth factor 1, vascular endothelial growth factor, and fibroblast growth factor, resulted in a significantly decreased phosphatidylinositol 3-kinase/AKT and ERK signaling response. Moreover, increased CIN85 protein is detectable in podocytes in diseased CD2AP(-/-) mice, leading to decreased base-line activation of ERK and decreased phosphorylation after growth factor stimulation in vivo. Because repression of CIN85 protein leads to a restored RTK signaling response, our results support an important role of CD2AP/CIN85 protein balance in the normal signaling response of podocytes.
We explain how fluctuations of ratios can constrain and falsify the statistical model of particle production in heavy ion collisions, using K/p fluctuations as an example. We define an observable capable of determining which statistical model, if any, governs freeze-out in ultrarelativistic heavy ion collisions. We calculate this observable for K/p fluctuations, and show that it should be the same for RHIC and LHC energies, as well as independent of centrality, if the Grand-Canonical statistical model is an appropriate description and chemical equilibrium applies. We describe variations of this scaling for deviations from this scenario, such as light quark chemical non-equilibrium, strange quark over-saturation and local conservation (canonical ensemble) for strange quarks. We also introduce a similar observable capable, together with the published K*/K measurement, of ascertaining if an interacting hadron gas phase governs the system between thermal and chemical freeze-out, and of ascertaining its duration and impact on hadronic chemistry.
While the Information Structure (IS) is most naturally interpreted as "structure of information", some may argue that it is structure of something else, and others may object to the use of the word "structure". This paper focuses on the question of whether the informational component can have structural properties such that it can be called "structure". The preliminary conclusion is that, althoughthere are some vague indications of structurehood in it, it is perhaps better understood to be a representation that encodes a finite set of information-based partitions, rather than structure.