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SUMO : glue or solvent for phase-separated ribonucleoprotein complexes and molecular condensates?
(2021)
Spatial organization of cellular processes in membranous or membrane-less organelles (MLOs, alias molecular condensates) is a key concept for compartmentalizing biochemical pathways. Prime examples of MLOs are the nucleolus, PML nuclear bodies, nuclear splicing speckles or cytosolic stress granules. They all represent distinct sub- cellular structures typically enriched in intrinsically disordered proteins and/or RNA and are formed in a process driven by liquid-liquid phase separation. Several MLOs are critically involved in proteostasis and their formation, disassembly and composition are highly sensitive to proteotoxic insults. Changes in the dynamics of MLOs are a major driver of cell dysfunction and disease. There is growing evidence that post-translational modifications are critically involved in controlling the dynamics and composition of MLOs and recent evidence supports an important role of the ubiquitin-like SUMO system in regulating both the assembly and disassembly of these structures. Here we will review our current understanding of SUMO function in MLO dynamics under both normal and pathological conditions.
The dynamic and reversible post-translational modification of proteins and protein complexes with the ubiquitin-related SUMO modifier regulates a wide variety of nuclear functions, such as transcription, replication and DNA repair. SUMO can be attached as a monomer to its targets, but can also form polymeric SUMO chains. While monoSUMOylation is generally involved in the assembly of protein complexes, multi- or polySUMOylation may have very different consequences. The evolutionary conserved paradigmatic signaling process initiated by multi- or polySUMOylation is the SUMO-targeted Ubiquitin ligase (StUbL) pathway, where the presence of multiple SUMO moieties primes ubiquitylation by the mammalian E3 ubiquitin ligases RNF4 or RNF111, or the yeast Slx5/8 heterodimer. The mammalian SUMO chain-specific isopeptidases SENP6 or SENP7, or yeast Ulp2, counterbalance chain formation thereby limiting StUbL activity. Many facets of SUMO chain signaling are still incompletely understood, mainly because only a limited number of polySUMOylated substrates have been identified. Here we summarize recent work that revealed a highly interconnected network of candidate polySUMO modified proteins functioning in DNA damage response and chromatin organization. Based on these datasets and published work on distinct polySUMO-regulated processes we discuss overarching concepts in SUMO chain function. We propose an evolutionary conserved role of polySUMOylation in orchestrating chromatin dynamics and genome stability networks by balancing chromatin-residency of protein complexes. This concept will be exemplified in processes, such as centromere/kinetochore organization, sister chromatid cohesion, DNA repair and replication.
Terrestrial, freshwater and estuarine native vegetation of the Eden region was classified into 79 floristic assemblages and mapped at 1:100,000 scale. Assemblages were derived from multivariate analysis of 1604 quantitative vegetation samples. Mapping was carried out using a hybrid decision tree-expert system approach based on quantitative relationships between floristic assemblages and spatial variables (land cover pattern, substrate, climatic variables and terrain variables) and qualitative expert knowledge derived from field experience. The use of vegetation environment relationships and sampling of remnants allowed prediction of vegetation patterns prior to European clearing. The map was validated using three procedures: qualitative checking by experts; reliability mapping using sampling intensity; and accuracy quantification using independent sample data. The map units were described using comprehensive profiles of diagnostic species, structural features, habitat characteristics and sample distributions.
The 79 floristic assemblages include rainforests, mesic eucalypt forests, dry grassy eucalypt forests of the coastal rain shadow valleys, hinterland and tableland, dry shrubby eucalypt forests, grasslands, heathlands, scrubs and wetlands. Variation in climate and geological substrate influence vegetation patterns at regional scales, while variation in topography, local soil moisture and nutrient status and disturbance regimes influence vegetation patterns at local scales. Sixty-eight per cent of the region retained a cover of native vegetation in 1994. Processes threatening various portions of the remainder include further habitat loss from clearing, high-frequency disturbances and certain other disturbance regimes, overgrazing, habitat degradation due to nutrification, dumping and vandalism, and feral animal activity. Past depletion of habitat has been highly biased. Some grassy assemblages on fertile flat terrain are depleted by more than 90%, while some forests with shrubby understories in steep infertile terrain retain close to their original extent. The former assemblages are distributed principally as remnants on privately owned land, while the latter occur in remote areas of public land. Representation in conservation reserves is also biased against grassy assemblages in fertile flat terrain, as well as some other assemblages with restricted distributions. Opportunities for conservation of these assemblages are now very limited and rely on integrated planning, reservation and cooperative management with emphasis on private land.
An exhaustive review of available information revealed 1522 native vascular plant taxa with confirmed records in the Eden region. A further 136 taxa potentially occur in the region, but these remain to be confirmed. Families represented by large numbers of taxa in the indigenous flora include the Fabaceae, Poaceae, Asteraceae, Myrtaceae and Orchidaceae. Species frequencies were highly skewed with 74% of the flora represented in less than 1% of survey samples and only three taxa represented in more than 40% of samples. A large number of records (350 taxa) were evaluated and refuted, emphasizing the importance of critical validation when compiling biological inventory data from multiple sources. Errors are most likely to arise from nomenclatural synonymy and other duplications, misidentifications and erroneous locality information.
The confirmed vascular flora of the Eden region is relatively species-rich compared with other regions in tropical, temperate and semi-arid Australia, although these regions are less well-known botanically. However, the proportion of endemism (1%) is comparatively low, with 18 taxa unique to the region and a further 14 taxa with distributions extending just beyond the region. The Eden region includes 32 taxa listed as endangered or vulnerable in Australia and a further six taxa listed as endangered in New South Wales but not throughout Australia. Thirty-eight taxa were listed as rare in Australia and a further 39 were considered to be uncommon throughout their distribution. Four hundred and sixty-six taxa were considered to be uncommon within the Eden region. Two hundred and seventy-six taxa reached their distributional limits in the Eden region, about three quarters of these reaching their southern limits. Fifty taxa were represented in the region by disjunct populations.
Introduced taxa accounted for approximately 20% of the total regional vascular flora, although this proportion is likely to underestimate the introduced flora given the limitations of available data. The introduced flora is dominated by Poaceae, Asteraceae, Fabaceae and Caryophyllaceae. Very few introduced taxa were widespread in native vegetation. The most common introduced taxa were herbs with long-distance propagule dispersal mechanisms.
Das Treiben der Kunst-Avantgarden in den ersten Jahrzehnten des 20. Jahrhunderts war ein übernationales gesamteuropäisches Phänomen - nicht nur im Sinne wechselseitiger transnationaler Einflüsse und Kooperationen, sondern auch in Strukturanalogien zwischen den Programmen und Produktionen in verschiedenen Ländern. Eine Verwandtschaft zwischen deutschsprachigem Dada und den russischsprachigen 'kubofuturistischen' Gruppen Gileja und 41° wurde, ausgehend vor allem von der in beiden literarischen Avantgarden gepflegten Lautpoesie, immer wieder beschworen, doch begnügte man sich dabei entweder mit ganz allgemeinen Feststellungen oder beschränkte sich auf eng begrenzte Teilaspekte. Ziel dieses Aufsatzes ist es, interkulturelle Kongruenzen und kulturspezifische Kontraste hinsichtlich der beiden poetischen Formen Laut- und visuelle Dichtung in den beiden Kulturräumen darzustellen und dabei zu zeigen, dass man es mit verschiedenen, doch verwandten Ausprägungen avantgardistischen Handelns zu tun hat.
Mistrust and social hierarchies as blind spots of ICT4D projects : lessons from Togo and Rwanda
(2019)
Information and communication technologies for development (ICT4D) are seen to have great potential for boosting democratization processes all over the world by giving people access to information and thereby empowering them to demand more accountability and transparency of authorities. Based on ethnographic research in Togo and Rwanda on an SMS-based citizen monitoring and evaluation system, this article argues that focusing on access to information is too narrow a view. We show that it is crucial to take into account the respective socio-political backgrounds, such as levels of mistrust or existing social hierarchies. In this context, mobile phone usage has rather varied and ambiguous meanings here. These dynamics can pose a challenge to the successful implementation of ICT4D projects aimed at political empowerment. By addressing these often overlooked issues, we offer explanations for the gap between ICT4D assumptions and people’s lifeworlds in Togo and Rwanda.