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Room-temperature dynamic nuclear polarization enhanced NMR spectroscopy of small biological molecules in water

  • Nuclear magnetic resonance (NMR) spectroscopy is a powerful and popular technique for probing the molecular structures, dynamics and chemical properties. However the conventional NMR spectroscopy is bottlenecked by its low sensitivity. Dynamic nuclear polarization (DNP) boosts NMR sensitivity by orders of magnitude and resolves this limitation. In liquid-state this revolutionizing technique has been restricted to a few specific non-biological model molecules in organic solvents. Here we show that the carbon polarization in small biological molecules, including carbohydrates and amino acids, can be enhanced sizably by in situ Overhauser DNP (ODNP) in water at room temperature and at high magnetic field. An observed connection between ODNP 13C enhancement factor and paramagnetic 13C NMR shift has led to the exploration of biologically relevant heterocyclic compound indole. The QM/MM MD simulation underscores the dynamics of intermolecular hydrogen bonds as the driving force for the scalar ODNP in a long-living radical-substrate complex. Our work reconciles results obtained by DNP spectroscopy, paramagnetic NMR and computational chemistry and provides new mechanistic insights into the high-field scalar ODNP.
Metadaten
Author:Danhua DaiORCiDGND, Xianwei WangORCiD, Yiwei LiuORCiD, Xiao-Liang Yang, Clemens GlaubitzORCiDGND, Vasyl Denysenkov, Xiao HeORCiD, Thomas PrisnerORCiD, Jiafei MaoORCiD
URN:urn:nbn:de:hebis:30:3-697899
DOI:https://doi.org/10.1038/s41467-021-27067-0
ISSN:2041-1723
Parent Title (English):Nature Communications
Publisher:Nature Publishing Group UK
Place of publication:[London]
Document Type:Article
Language:English
Date of Publication (online):2021/11/25
Date of first Publication:2021/11/25
Publishing Institution:Universitätsbibliothek Johann Christian Senckenberg
Release Date:2024/03/12
Tag:Analytical chemistry; Biophysical chemistry; Theoretical chemistry
Volume:12
Issue:art. 6880
Article Number:6880
Page Number:15
First Page:1
Last Page:15
Note:
The ODNP NMR data have been deposited in Figshare (https://doi.org/10.6084/m9.figshare.14774433, https://doi.org/10.6084/m9.figshare.14774415). The results of DFT calculations have been deposited in GitHub (https://github.com/xiaohegroup/Simulations-of-Tempol). The full QM/MM trajectory is available from the corresponding authors upon reasonable requests. Source data are provided with this paper.
Note:
All input files for the DFT calculations and QM/MM simulations are available via GitHub (https://github.com/xiaohegroup/Simulations-of-Tempol, https://doi.org/10.5281/zenodo.5150908). The codes for analyzing the QM/MM trajectory are available from the corresponding authors upon reasonable requests.
Note:
Open Access funding enabled and organized by Projekt DEAL.
Institutes:Biochemie, Chemie und Pharmazie
Wissenschaftliche Zentren und koordinierte Programme / Zentrum für Biomolekulare Magnetische Resonanz (BMRZ)
Dewey Decimal Classification:5 Naturwissenschaften und Mathematik / 53 Physik / 530 Physik
5 Naturwissenschaften und Mathematik / 54 Chemie / 540 Chemie und zugeordnete Wissenschaften
Sammlungen:Universitätspublikationen
Licence (German):License LogoCreative Commons - CC BY - Namensnennung 4.0 International