Characterization of microsatellite loci in the lichen-forming fungus cetraria aculeata (parmeliaceae, ascomycota)
- Premise of the study: Polymorphic microsatellite markers were developed for the lichen species Cetraria aculeata (Parmeliaceae) to study fine-scale population diversity and phylogeographic structure. Methods and Results: Using Illumina HiSeq and MiSeq, 15 fungus-specific microsatellite markers were developed and tested on 81 specimens from four populations from Spain. The number of alleles ranged from four to 13 alleles per locus with a mean of 7.9, and average gene diversities varied from 0.40 to 0.73 over four populations. The amplification rates of 10 markers (CA01– CA10) in populations of C. aculeata exceeded 85%. The markers also amplified across a range of closely related species, except for locus CA05, which did not amplify in C. australiensis and C. "panamericana," and locus CA10 which did not amplify in C. australiensis. Conclusions: The identified microsatellite markers will be used to study the genetic diversity and phylogeographic structure in populations of C. aculeata in western Eurasia.
Author: | Tetiana Lutsak, Fernando Fernández Mendoza, Bastian Greshake Tzovaras, Francesco Dal Grande, Ingo EbersbergerORCiDGND, Sieglinde Ott, Christian Printzen |
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URN: | urn:nbn:de:hebis:30:3-422651 |
URL: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5033364 |
DOI: | https://doi.org/10.3732/apps.1600047 |
ISSN: | 2168-0450 |
Pubmed Id: | https://pubmed.ncbi.nlm.nih.gov/27672520 |
Parent Title (English): | Applications in plant sciences |
Publisher: | BioOne |
Place of publication: | Washington, DC |
Document Type: | Article |
Language: | English |
Date of Publication (online): | 2016/12/01 |
Date of first Publication: | 2016/09/19 |
Publishing Institution: | Universitätsbibliothek Johann Christian Senckenberg |
Release Date: | 2016/12/01 |
Tag: | Cetraria aculeata; Parmeliaceae; lichen; microsatellites |
Volume: | 4 |
Issue: | (9):1600047 |
Page Number: | 5 |
First Page: | 1 |
Last Page: | 4 |
Note: | © 2016 Lutsak et al. Published by the Botanical Society of America. This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
HeBIS-PPN: | 428668976 |
Institutes: | Biowissenschaften / Biowissenschaften |
Angeschlossene und kooperierende Institutionen / Senckenbergische Naturforschende Gesellschaft | |
Fachübergreifende Einrichtungen / Biodiversität und Klima Forschungszentrum (BiK-F) | |
Dewey Decimal Classification: | 5 Naturwissenschaften und Mathematik / 57 Biowissenschaften; Biologie / 570 Biowissenschaften; Biologie |
Sammlungen: | Universitätspublikationen |
Licence (German): | ![]() |