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Biodiversity research heavily relies on recent and older literature, and the data contained therein. Despite great effort, large parts of the literature and the data it holds are still not available in appropriate formats needed for efficient compilation and analysis. As a part of the current funding strategy of the German Research Council (Deutsche Forschungsgemeinschaft, DFG), and resulting from an extensive dialogue with the scientific community in Germany, a "Specialised Information Service" (Fachinformationsdienst, FID) for Biodiversity Research will be established with the objective of making further segments of literature about biodiversity available in up-to-date formats. This project, starting 2017, is conducted by the University Library Johann Christian Senckenberg (Frankfurt/Main, Germany) together with the Senckenberg Gesellschaft für Naturforschung and the Text Technology Lab of the Goethe University (Frankfurt/Main).
The new Specialised Information Service for Biodiversity Research (FID Biodiversitätsforschung) comprises four core elements: (A) A text mining approach which encompasses advanced text technologies and a large body of 20th century literature; (B) the digitisation of selected German biodiversity literature; (C) a platform für Open Access journals; and (D) Acquisition of specialised print literature.
In an ideal world, extraction of machine-readable data and knowledge from natural-language biodiversity literature would be done automatically, but not so currently. The BIOfid project has developed some tools that can help with important parts of this highly demanding task, while certain parts of the workflow cannot be automated yet. BIOfid focuses on the 20th century legacy literature, a large part of which is only available in printed form. In this workshop, we will present the current state of the art in mobilisation of data from our corpus, as well as some challenges ahead of us. Together with the participants, we will exercise or explain the following tasks (some of which can be performed by the participants themselves, while other tasks currently require execution by our specialists with special equipment): Preparation of text files as an input; pre-processing with TextImager/TextAnnotator; semiautomated annotation and linking of named entities; generation of output in various formats; evaluation of the output. The workshop will also provide an outlook for further developments regarding extraction of statements from natural-language literature, with the long-term aim to produce machine-readable data from literature that can extend biodiversity databases and knowledge graphs.
Die Möglichkeiten zum Recherchieren von botanischer Literatur über Hessen in sieben Online-Datenbanken werden vergleichend betrachtet. Unter anderem werden Testrecherchen zu Beiträgen in den Zeitschriften Hessische Floristische Briefe und Botanik und Naturschutz in Hessen ausgewertet. Es stellt sich heraus, dass im Feld der getesteten Datenbanken die Hessische Bibliographie sowie Biological Abstracts jeweils eine besondere Stellung einnehmen; mehrere weitere, überwiegend lizenzfrei nutzbare Datenbanken liefern ebenfalls substanzielle Beiträge. Die von der Universitätsbibliothek Johann Christian Senckenberg in Frankfurt am Main aufgebaute Virtuelle Fachbibliothek Biologie (vifabio) erleichtert den Zugang zu einigen wesentlichen Ressourcen; unter anderem können Hessische Bibliographie und Biological Abstracts sowie weitere Datenbanken in vifabio mit einer einzigen Suchanfrage parallel durchsucht werden.
With the ongoing loss of global biodiversity, long-term recordings of species distribution patterns are increasingly becoming important to investigate the causes and consequences for their change. Therefore, the digitization of scientific literature, both modern and historical, has been attracting growing attention in recent years. To meet this growing demand the Specialised Information Service for Biodiversity Research (BIOfid) was launched in 2017 with the aim of increasing the availability and accessibility of biodiversity information. Closely tied to the research community the interdisciplinary BIOfid team is digitizing data sources of biodiversity related research and provides a modern and professional infrastructure for hosting and sharing them. As a pilot project, German publications on the distribution and ecology of vascular plants, birds, moths and butterflies covering the past 250 years are prioritized. Large parts of the text corpus defined in accordance with the needs of the relevant German research community have already been transferred to a machine-readable format and will be publicly accessible soon. Software tools for text mining, semantic annotation and analysis with respect to the current trends in machine learning are developed to maximize bioscientific data output through user-specific queries that can be created via the BIOfid web portal (https://www.biofid.de/). To boost knowledge discovery, specific ontologies focusing on morphological traits and taxonomy are being prepared and will continuously be extended to keep up with an ever-expanding volume of literature sources.
Die Datenbank BioLIS wird durch die Universitätsbibliothek Johann Christian Senckenberg (Frankfurt/M.) kostenfrei online zur Verfügung gestellt. Sie weist deutsche biologische Zeitschriftenliteratur aus dem Zeit¬raum 1970 bis 1996 nach – damit ist BioLIS eine wesentliche Ergänzung zu der Datenbank „Biological Abstracts“. Die bibliografischen Angaben zu den nachgewiesenen Aufsätzen werden durch umfassende Schlagwörter und Namen behandelter Organismen ergänzt, so dass Spezialrecherchen insbesondere nach Literatur über bestimmte Organismen möglich sind.
Buchbesprechungen
(2023)
Buchbesprechungen
(2022)
Es werden folgende Publikationen rezensiert: Jansen W. & T. Gregor 2021: Rubi hassici – die Brombeeren Hessens; Schmidt M. & P. Meyer (Gesamtredaktion) 2019: Hessische Naturwaldreservate im Portrait. Waldgebiet östlich Oppershofen; Schmidt M. & P. Meyer (Gesamtredaktion) 2020: Hessische Naturwaldreservate im Portrait. Schloßberg; Schmidt M., J. Evers, T. Hövelmann, K. Lorenz, U. Paar, R. Starke & P. Meyer 2021: Hessische Naturwaldreservate im Portrait. Niestehänge; Stützel T. 2021: Botanische Bestimmungsübungen. 4. Auflage; Ssymank A., G. Ellwanger, M. Ersfeld, J. Ferner, S. Lehrke, C. Müller, U. Raths, M. Röhling & M. Vischer-Leopold 2021: Das europäische Schutzgebietssystem Natura 2000. BfN-Handbuch zur Umsetzung der Fauna-Flora-Habitat-Richtlinie (92/43/EWG) und der Vogelschutzrichtlinie (2009/147/EG). Zweite, erweiterte und geänderte Auflage. Band 2.1: Lebensraumtypen der Meere und Küsten, der Binnengewässer sowie der Heiden und Gebüsche; Tietze A., C. Hepting, V. Hollmann, L. Jeske, I. Leyer, S. Liepelt, A. Peters & J. Weise 2020: Wilde Arnika – Ein Leitfaden für die Praxis; Verband Botanischer Gärten (2021): Neue Wilde – Globalisierung in der Pflanzenwelt.
Kagbeni and its irrigated oasis are surrounded by subdesert dwarf scrubland. In the present study, a list of 78 species of vascular plants is presented for Kagbeni and its immediate surroundings, supplemented with data on the distribution of the species within the entire Mustan District. The data are arrived from own investigations and the geobotanical literature. A phytogeographical analysis shows the prevalence of western over eastern elements. Species with a wide distribution in Eurasia, which constitute one third of the total flora of Kagbeni, are of great importance as weeds on arable fields and in ruderal places within the irrigated oasis. Their occurrence is closely related to human activity. Presumably, most of these weeds have reached the area under study in connection with agriculture a long time ago. Weeds from the New World, although recorded in other villages of Mustan District, have not been found in Kagbeni. The weed vegetation of Kagbeni is documented by nine vegetation releves, and is compared to releves from Jomsom and Mzrpha. A floristic gradient from south to north that has been detected by earlier investigations throughout the whole district can be reproduced at the local scale. With regard to the weed flora, the effects of different crops are minimal, compared to effects of altitude and other factors related to altitude.