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Heute sterben zehn- bis hundertmal mehr Arten aus, als dies ohne die massiven Einflüsse des Menschen auf das System »Erde«der Fall wäre. Der Artenforscher Matthias Schleuning untersucht, wie Pflanzen und Tiere in komplexen Ökosystemen voneinander abhängen. Damit kann er voraussagen, wer zu den Gewinnern und den Verlierern von Klimawandel und stärkerer Landnutzung werden wird.
Bernatz, Simon ; Ackermann, Jörg ; Mandel, Philipp ; Kaltenbach, Benjamin ; Zhdanovich, Yauheniya ; Harter, Patrick Nikolaus ; Döring, Claudia ; Hammerstingl, Renate Maria ; Bodelle, Boris ; Smith, Kevin ; Bucher, Andreas ; Albrecht, Moritz Hans Ernst ; Rosbach, Nicolas ; Basten, Lajos Maximilian ; Yel, Ibrahim ; Wenzel, Mike ; Bankov, Katrin ; Koch, Ina ; Chun, Felix ; Köllermann, Jens ; Wild, Peter Johannes ; Vogl, Thomas J.
Objectives: To analyze the performance of radiological assessment categories and quantitative computational analysis of apparent diffusion coefficient (ADC) maps using variant machine learning algorithms to differentiate clinically significant versus insignificant prostate cancer (PCa). Methods: Retrospectively, 73 patients were included in the study. The patients (mean age, 66.3 ± 7.6 years) were examined with multiparametric MRI (mpMRI) prior to radical prostatectomy (n = 33) or targeted biopsy (n = 40). The index lesion was annotated in MRI ADC and the equivalent histologic slides according to the highest Gleason Grade Group (GrG). Volumes of interest (VOIs) were determined for each lesion and normal-appearing peripheral zone. VOIs were processed by radiomic analysis. For the classification of lesions according to their clinical significance (GrG ≥ 3), principal component (PC) analysis, univariate analysis (UA) with consecutive support vector machines, neural networks, and random forest analysis were performed. Results: PC analysis discriminated between benign and malignant prostate tissue. PC evaluation yielded no stratification of PCa lesions according to their clinical significance, but UA revealed differences in clinical assessment categories and radiomic features. We trained three classification models with fifteen feature subsets. We identified a subset of shape features which improved the diagnostic accuracy of the clinical assessment categories (maximum increase in diagnostic accuracy ΔAUC = + 0.05, p < 0.001) while also identifying combinations of features and models which reduced overall accuracy. Conclusions: The impact of radiomic features to differentiate PCa lesions according to their clinical significance remains controversial. It depends on feature selection and the employed machine learning algorithms. It can result in improvement or reduction of diagnostic performance.
he Pauli Exclusion Principle (PEP) is one of the most basic concepts in physics, but also the most difficult to implement in many-fermion systems, which are common in nuclear physics. To investigate the consequences of ignoring the PEP, we discuss several algebraic models in nuclear structure physics, in particular cluster models. Sometimes they tend to ignore the Pauli Exclusion Principle for practical reasons, leading to flawed interpretations. Though at first sight there seems to be an agreement to experiment, often it is due to the limited number of states known experimentally. We discuss several models which include or not the PEP, illustrating through their differences the importance of the PEP. This contribution is also a review of recently published results.
Ausgehend von spezifischen Anforderungen inklusiver Settings wird in diesem Beitrag ein Ansatz zur Weiterentwicklung des Modells der professionellen Handlungskompetenz von Lehrkräften für inklusiven (Mathematik-)Unterricht vorgestellt. Inklusion wird dabei verstanden als fachliches Lernen und gemeinsame Teilhabe aller Schülerinnen und Schüler. Für die Weiterentwicklung werden zunächst Anforderungen durch inklusive Bildung betrachtet, einerseits abgeleitet aus verschiedenen Aufgaben- und Kompetenzkatalogen, andererseits basierend auf Kernbeständen für den Umgang mit Heterogenität im (Mathematik-)Unterricht im Allgemeinen und für inklusiven (Mathematik-)Unterricht im Speziellen. Anschließend wird daraus Wissen zur Bewältigung dieser Anforderungen abgeleitet und unter Rückgriff auf die verschiedenen Bereiche des Professionswissens (Fachwissen, pädagogisches Wissen, fachdidaktisches Wissen, Organisationswissen und Beratungswissen) weiter ausgeführt, wobei der Fokus auf das fachdidaktische Wissen im inklusiven Mathematikunterricht gelegt wird. Die affektiven und motivationalen Merkmale (Überzeugungen, Selbstregulation und Motivation) der professionellen Handlungkompetenz werden ebenfalls in die Weiterentwicklung des Modells einbezogen. Insgesamt erfolgt die Weiterentwicklung des Modells somit im Rahmen einer Erweiterung der einzelnen bestehenden Kompetenzbereiche um Aspekte, die unter Inklusionsgesichtspunkten besondere Bedeutung erfahren. Mit der Identifizierung von Kompetenzbereichen bei Lehrkräften zu Beginn einer Fortbildung zu inklusivem Mathematikunterricht wird ein Beispiel präsentiert, wie das weiterentwickelte Modell angewendet werden kann. In diesem Zusammenhang konnten in den Äußerungen der Lehrkräfte – abgesehen vom Fachwissen – alle Kompetenzbereiche identifiziert werden. Abschließend werden Möglichkeiten vorgestellt, wie das Modell im Kontext der Lehrerprofessionalisierungsforschung weiterhin eingesetzt werden kann.
Volatility clustering and fat tails are prominently observed in financial markets. Here, we analyze the underlying mechanisms of three agent-based models explaining these stylized facts in terms of market instabilities and compare them on empirical grounds. To this end, we first develop a general framework for detecting tail events in stock markets. In particular, we introduce Hawkes processes to automatically identify and date onsets of market turmoils which result in increased volatility. Second, we introduce three different indicators to predict those onsets. Each of the three indicators is derived from and tailored to one of the models, namely quantifying information content, critical slowing down or market risk perception. Finally, we apply our indicators to simulated and real market data. We find that all indicators reliably predict market events on simulated data and clearly distinguish the different models. In contrast, a systematic comparison on the stocks of the Forbes 500 companies shows a markedly lower performance. Overall, predicting the onset of market turmoils appears difficult, yet, over very short time horizons high or rising volatility exhibits some predictive power.
Most living organisms possess varying degrees of regenerative capabilities but how these regenerative processes are controlled is still poorly understood. Naturally occurring bioelectric voltages (like Vmem) are thought to be playing instructive role in tissue regeneration, as well as embryonic development. The different distribution of ions on the either side of the cell membrane results in intra- and extra-cellular voltage differences, known as membrane potential or Vmem. The relationship between Vmem and cell physiology is conserved in a wide range of cell types and suggests that Vmem regulation is a fundamental control mechanism for regeneration related processes e.g., proliferation and differentiation. In the present study we measured Vmem in three different cell types (human osteogenic sarcoma cell line (OSC), rat bone marrow derived mesenchymal stem cells (BM-MSC), and rat dermal fibroblasts) and characterized the relationship between their Vmem and proliferation. In order to find out if Vmem controls proliferation, or visa-versa, we blocked and then unblocked Na+/K+-exchanging ATPase using ouabain and measured the proliferation. Our results demonstrate that Vmem can be pharmacologically manipulated to control proliferation in certain cell types like BM-MSC. Taken together, it is clear that control of bioelectrical properties in non-excitable cells could prove to be potentially a useful tool in regenerative medicine efforts.
This paper documents that resource reallocation across firms is an important mechanism through which creditor rights affect real outcomes. I exploit the staggered adoption of an international convention that provides globally consistent strong creditor protection for aircraft finance. After this reform, country-level productivity in the aviation sector increases by 12%, driven mostly by across-firm reallocation. Productive airlines borrow more, expand, and adopt new technology at the expense of unproductive ones. Such reallocation is facilitated by (i) easier and quicker asset redeployment; and (ii) the influx of foreign financiers offering innovative financial products to improve credit allocative efficiency. I further document an increase in competition and an improvement in the breadth and the quality of products available to consumers.
Biederstädt, Alexander ; Hassan, Zonera ; Schneeweis, Christian ; Schick, Markus ; Schneider, Lara ; Muckenhuber, Alexander ; Hong, Yingfen ; Siegers, Gerrit ; Nilsson, Lisa ; Wirth, Matthias ; Dantes, Zahra ; Steiger, Katja ; Schunck, Kathrin ; Langston, Steve ; Lenhof, Hans-Peter ; Coluccio, Andrea ; Orben, Felix ; Slawska, Jolanta ; Scherger, Anna ; Saur, Dieter ; Müller, Stefan ; Rad, Roland ; Weichert, Wilko ; Nilsson, Jonas ; Reichert, Maximilian ; Schneider, Günter ; Keller, Ulrich
Objective: Pancreatic ductal adenocarcinoma (PDAC) still carries a dismal prognosis with an overall 5-year survival rate of 9%. Conventional combination chemotherapies are a clear advance in the treatment of PDAC; however, subtypes of the disease exist, which exhibit extensive resistance to such therapies. Genomic MYC amplifications represent a distinct subset of PDAC with an aggressive tumour biology. It is clear that hyperactivation of MYC generates dependencies that can be exploited therapeutically. The aim of the study was to find and to target MYC-associated dependencies.
Design: We analysed human PDAC gene expression datasets. Results were corroborated by the analysis of the small ubiquitin-like modifier (SUMO) pathway in a large PDAC cohort using immunohistochemistry. A SUMO inhibitor was used and characterised using human and murine two-dimensional, organoid and in vivo models of PDAC.
Results: We observed that MYC is connected to the SUMOylation machinery in PDAC. Components of the SUMO pathway characterise a PDAC subtype with a dismal prognosis and we provide evidence that hyperactivation of MYC is connected to an increased sensitivity to pharmacological SUMO inhibition.
Conclusion: SUMO inhibitor-based therapies should be further developed for an aggressive PDAC subtype.
Bieler, Patrick ; Bister, Milena D. ; Hauer, Janine ; Klausner, Martina ; Niewöhner, Jörg ; Schmid, Christine ; Peter, Sebastian von
In ethnographic research and analysis, reflexivity is vital to achieving constant coordination between field and concept work. However, it has been conceptualized predominantly as an ethnographer’s individual mental capacity. In this article, we draw on ten years of experience in conducting research together with partners from social psychiatry and mental health care across different research projects. We unfold three modes of achieving reflexivity co-laboratively: contrasting and discussing disciplinary concepts in interdisciplinary working groups and feedback workshops; joint data interpretation and writing; and participating in political agenda setting. Engaging these modes reveals reflexivity as a distributed process able to strengthen the ethnographer’s interpretative authority, and also able to constantly push the conceptual boundaries of the participating disciplines and professions.
Risk stratification for bipolar disorder using polygenic risk scores among young high-risk adults
(2020)
Biere, Silvia ; Kranz, Thorsten Manfred ; Matura, Silke ; Petrova, Kristiyana ; Streit, Fabian ; Geburtig-Chiocchetti, Andreas ; Grimm, Oliver ; Brum, Murielle ; Brunkhorst-Kanaan, Nathalie ; Oertel, Viola ; Malyshau, Aliaksandr ; Pfennig, Andrea ; Bauer, Michael ; Schulze, Thomas Gerd ; Kittel-Schneider, Sarah ; Reif, Andreas
Objective: Identifying high-risk groups with an increased genetic liability for bipolar disorder (BD) will provide insights into the etiology of BD and contribute to early detection of BD. We used the BD polygenic risk score (PRS) derived from BD genome-wide association studies (GWAS) to explore how such genetic risk manifests in young, high-risk adults. We postulated that BD-PRS would be associated with risk factors for BD.
Methods: A final sample of 185 young, high-risk German adults (aged 18–35 years) were grouped into three risk groups and compared to a healthy control group (n = 1,100). The risk groups comprised 117 cases with attention deficit hyperactivity disorder (ADHD), 45 with major depressive disorder (MDD), and 23 help-seeking adults with early recognition symptoms [ER: positive family history for BD, (sub)threshold affective symptomatology and/or mood swings, sleeping disorder]. BD-PRS was computed for each participant. Logistic regression models (controlling for sex, age, and the first five ancestry principal components) were used to assess associations of BD-PRS and the high-risk phenotypes.
Results: We observed an association between BD-PRS and combined risk group status (OR = 1.48, p < 0.001), ADHD diagnosis (OR = 1.32, p = 0.009), MDD diagnosis (OR = 1.96, p < 0.001), and ER group status (OR = 1.7, p = 0.025; not significant after correction for multiple testing) compared to healthy controls.
Conclusions: In the present study, increased genetic risk for BD was a significant predictor for MDD and ADHD status, but not for ER. These findings support an underlying shared risk for both MDD and BD as well as ADHD and BD. Improving our understanding of the underlying genetic architecture of these phenotypes may aid in early identification and risk stratification.
We present novel evidence on the value of cross-border political access. We analyze data on meetings of US multinational enterprises (MNEs) with European Commission (EC) policymakers. Meetings with Commissioners are associated with positive abnormal equity returns. We study channels of value creation through political access in the areas of regulation and taxation. US enterprises with EC meetings are more likely to receive favorable outcomes in their European merger decisions and have lower effective tax rates on foreign income than their peers without meetings. Our results suggest that access to foreign policymakers is of substantial value for MNEs.
Bijanzadeh, Anne ; Hermanns, Ingo ; Ellegast, Rolf Peter ; Fräulin, Laura ; Holzgreve, Fabian Christian ; Mache, Stefanie ; Groneberg, Jan David Alexander ; Ohlendorf, Daniela Maren
Background: The aim of this pilot study was to analyze postures during the work of neurologists with respect to their occupational activities.
Methods: A total data material of 64.8 h (3885.74 min) of nine (three m/six f) neurologists (assistant physicians) was collected. Kinematic data were collected using the CUELA system (electro-goniometry). In addition, the occupational tasks performed on-site were subject to a detailed objective activity analysis. All activities were assigned to the categories "Office activities" (I), "Measures on patients" (II) and "Other activities" (III). The angle values of each body region (evaluation parameters) were evaluated according to ergonomic ISO standards.
Results: Only 3.4% of the working hours were spent with (II), while 50.8% of time was spent with (I) and 45.8% with (III). All tasks of category (II) revealed an increased ergonomic risk to the head, neck, trunk and back areas. During category (I) especially neck and back movements in the sagittal plane showed higher ergonomic risk levels.
Conclusion: Despite frequently performed awkward body positions in (II), the ergonomic risk is considered as rather low, since the percentage time share totaled only 3.4%. As a result, "Office activities" have been detected as high predictor to cause stress load on the musculoskeletal system in the daily work of neurologists.
We analyze the ESG rating criteria used by prominent agencies and show that there is a lack of a commonality in the definition of ESG (i) characteristics, (ii) attributes and (iii) standards in defining E, S and G components. We provide evidence that heterogeneity in rating criteria can lead agencies to have opposite opinions on the same evaluated companies and that agreement across those providers is substantially low. Those alternative definitions of ESG also a↵ect sustainable investments leading to the identification of di↵erent investment universes and consequently to the creation of di↵erent benchmarks. This implies that in the asset management industry it is extremely dicult to measure the ability of a fund manager if financial performances are strongly conditioned by the chosen ESG benchmark. Finally, we find that the disagreement in the scores provided by the rating agencies disperses the e↵ect of preferences of ESG investors on asset prices, to the point that even when there is agreement, it has no impact on financial performances.
In der vorgelegten kumulativen Arbeit wurden strukturelle und funktionale Untersuchungen an Nukleinsäuren durchgeführt, hauptsächlich, aber nicht ausschließlich unter Verwendung von NMR-Spektroskopie (Kernspin Resonanzspektroskopie) als Analysemethode. Die untersuchten Biomoleküle umfassten kleinere und größere biologisch relevante RNAs sowie einen artifiziellen DNA G-Quadruplex. Hierbei konnten Ergebnisse im Bereich der Bestimmung der molekularen Struktur, der Aufklärung der biologischen Funktion und der Wirkstoffentwicklung gewonnen werden, die in sechs verschiedenen Publikationen dargelegt sind, an deren Erstellung der Autor maßgeblich oder hauptverantwortlich beteiligt war. Des Weiteren wird in einem mehrgliedrigen Einleitungssegment auf den Stand der aktuellen Forschung in den jeweiligen Teilgebieten eingegangen.
We present the rapid biophysical characterization of six previously reported putative G‐quadruplex‐forming RNAs from the 5′‐untranslated region (5′‐UTR) of silvestrol‐sensitive transcripts for investigation of their secondary structures. By NMR and CD spectroscopic analysis, we found that only a single sequence—[AGG]2[CGG]2C—folds into a single well‐defined G‐quadruplex structure. Sequences with longer poly‐G strands form unspecific aggregates, whereas CGG‐repeat‐containing sequences exhibit a temperature‐dependent equilibrium between a hairpin and a G‐quadruplex structure. The applied experimental strategy is fast and provides robust readout for G‐quadruplex‐forming capacities of RNA oligomers.
Binas, Oliver ; Jesus, Vanessa de ; Landgraf, Tom ; Völklein, Albrecht Eduard ; Martins, Jason ; Hymon, Daniel ; Bains, Jasleen Kaur ; Berg, Hannes ; Biedenbänder, Thomas ; Fürtig, Boris ; Gande, Santosh Lakshmi ; Niesteruk, Anna ; Oxenfarth, Andreas ; Qureshi, Nusrat ; Schamber, Tatjana ; Schnieders, Robbin ; Tröster, Alix Friederike ; Wacker, Anna ; Wirmer-Bartoschek, Julia ; Wirtz Martin, Maria Alexandra ; Stirnal, Elke ; Azzaoui, Kamal ; Richter, Christian ; Sreeramulu, Sridhar ; Blommers, Marcel Jules José ; Schwalbe, Harald
We report here the nuclear magnetic resonance 19F screening of 14 RNA targets with different secondary and tertiary structure to systematically assess the druggability of RNAs. Our RNA targets include representative bacterial riboswitches that naturally bind with nanomolar affinity and high specificity to cellular metabolites of low molecular weight. Based on counter-screens against five DNAs and five proteins, we can show that RNA can be specifically targeted. To demonstrate the quality of the initial fragment library that has been designed for easy follow-up chemistry, we further show how to increase binding affinity from an initial fragment hit by chemistry that links the identified fragment to the intercalator acridine. Thus, we achieve low-micromolar binding affinity without losing binding specificity between two different terminator structures.
Inspired by the physiology of neuronal systems in the brain, artificial neural networks have become an invaluable tool for machine learning applications. However, their biological realism and theoretical tractability are limited, resulting in poorly understood parameters. We have recently shown that biological neuronal firing rates in response to distributed inputs are largely independent of size, meaning that neurons are typically responsive to the proportion, not the absolute number, of their inputs that are active. Here we introduce such a normalisation, where the strength of a neuron’s afferents is divided by their number, to various sparsely-connected artificial networks. The learning performance is dramatically increased, providing an improvement over other widely-used normalisations in sparse networks. The resulting machine learning tools are universally applicable and biologically inspired, rendering them better understood and more stable in our tests.
The identification of unknown bodies is the fulfilment of a moral obligation towards the deceased, serves to maintain legal security within a society, and gives families the certainty they need to mourn. Taking into account respective local conditions, the aim should always be to achieve a secure and quick identification. To achieve this goal, a functioning cooperation between investigating authorities and forensic sciences is essential. The main objective of this study was to clarify the potential role of tattoos in the identification process of unknown deceased persons in the state of Jalisco, Mexico. Post-mortem data of 2045 bodies from the Instituto Jaliscience de Ciencias Forenses in Guadalajara were evaluated. Of the deceased 46% were tattooed (male: 47%, female: 39%), with 29% of all bodies (male: 29%, female: 26%) showing tattoos at body locations usually visible in everyday life (i.e. head and neck, forearms and hands). The male bodies were most frequently tattooed on the shoulders and upper arms, followed by the forearms and hands and the torso. Female bodies mostly showed tattoos on the forearms and hands, followed by the torso and legs. Taking local tattooing habits into account, the authors developed a classification for tattoo motives. With decreasing frequency, the following keywords could be assigned to the motives: letters and/or numbers, human, symbol (other), plant, symbol (religious), animal, object, tribal/ornament/geometry, fantasy/demon/comic, other. Results of the study indicate the great importance of tattoos as a possible mean of identification in Jalisco, Mexico – either as a stand-alone identification method, as a complementary tool or for planning and prioritizing subsequent investigations.
Accounting for financial stability: Bank disclosure and loss recognition in the financial crisis
(2020)
This paper examines banks’ disclosures and loss recognition in the financial crisis and identifies several core issues for the link between accounting and financial stability. Our analysis suggests that, going into the financial crisis, banks’ disclosures about relevant risk exposures were relatively sparse. Such disclosures came later after major concerns about banks’ exposures had arisen in markets. Similarly, the recognition of loan losses was relatively slow and delayed relative to prevailing market expectations. Among the possible explanations for this evidence, our analysis suggests that banks’ reporting incentives played a key role, which has important implications for bank supervision and the new expected loss model for loan accounting. We also provide evidence that shielding regulatory capital from accounting losses through prudential filters can dampen banks’ incentives for corrective actions. Overall, our analysis reveals several important challenges if accounting and financial reporting are to contribute to financial stability.
Bittner, Vera A. ; Szarek, Michael ; Aylward, Philip E. ; Bhatt, Deepak L. ; Diaz, Rafael ; Edelberg, Jay M. ; Fras, Zlatko ; Goodman, Shaun G. ; Halvorsen, Sigrun ; Hanotin, Corinne ; Harrington, Robert A. ; Jukema, J. Wouter ; Loizeau, Virginie ; Moriarty, Patrick M. ; Moryusef, Angèle ; Pordy, Robert ; Roe, Matthew T. ; Sinnaeve, Peter ; Tsimikas, Sotirios ; Vogel, Robert ; White, Harvey D. ; Zahger, Doron ; Zeiher, Andreas M. ; Schwartz, Gregory G.
Background: Lipoprotein(a) concentration is associated with cardiovascular events. Alirocumab, a proprotein convertase subtilisin/kexin type 9 inhibitor, lowers lipoprotein(a) and low-density lipoprotein cholesterol (LDL-C).
Objectives: A pre-specified analysis of the placebo-controlled ODYSSEY Outcomes trial in patients with recent acute coronary syndrome (ACS) determined whether alirocumab-induced changes in lipoprotein(a) and LDL-C independently predicted major adverse cardiovascular events (MACE).
Methods: One to 12 months after ACS, 18,924 patients on high-intensity statin therapy were randomized to alirocumab or placebo and followed for 2.8 years (median). Lipoprotein(a) was measured at randomization and 4 and 12 months thereafter. The primary MACE outcome was coronary heart disease death, nonfatal myocardial infarction, ischemic stroke, or hospitalization for unstable angina.
Results: Baseline lipoprotein(a) levels (median: 21.2 mg/dl; interquartile range [IQR]: 6.7 to 59.6 mg/dl) and LDL-C [corrected for cholesterol content in lipoprotein(a)] predicted MACE. Alirocumab reduced lipoprotein(a) by 5.0 mg/dl (IQR: 0 to 13.5 mg/dl), corrected LDL-C by 51.1 mg/dl (IQR: 33.7 to 67.2 mg/dl), and reduced the risk of MACE (hazard ratio [HR]: 0.85; 95% confidence interval [CI]: 0.78 to 0.93). Alirocumab-induced reductions of lipoprotein(a) and corrected LDL-C independently predicted lower risk of MACE, after adjustment for baseline concentrations of both lipoproteins and demographic and clinical characteristics. A 1-mg/dl reduction in lipoprotein(a) with alirocumab was associated with a HR of 0.994 (95% CI: 0.990 to 0.999; p = 0.0081).
Conclusions: Baseline lipoprotein(a) and corrected LDL-C levels and their reductions by alirocumab predicted the risk of MACE after recent ACS. Lipoprotein(a) lowering by alirocumab is an independent contributor to MACE reduction, which suggests that lipoprotein(a) should be an independent treatment target after ACS. (ODYSSEY Outcomes: Evaluation of Cardiovascular Outcomes After an Acute Coronary Syndrome During Treatment With Alirocumab; NCT01663402).
Blank, Martina ; Flug, Matthias ; Hussein, Jason ; Jovanović, Teodora ; Arfaoui, Rafik ; Bianco, Rosella ; Ortiz Cobo, Mónica ; Taccolini Pannagio, Annie ; Gonzalez Benson, Odessa ; Robinson, Daniel B. ; Robinson, Ingrid M. ; Currie, Vanessa ; Hall, Nathan
Blankenbach, Kira Vanessa ; Claas, Ralf Frederik ; Aster, Natalie Judith ; Spohner, Anna Katharina ; Trautmann, Sandra ; Ferreirós Bouzas, Nerea ; Black, Justin L. ; Tesmer, John J. G. ; Offermanns, Stefan ; Wieland, Thomas ; Meyer zu Heringdorf, Dagmar
Diverse extracellular signals induce plasma membrane translocation of sphingosine kinase-1 (SphK1), thereby enabling inside-out signaling of sphingosine-1-phosphate. We have shown before that Gq-coupled receptors and constitutively active Gαq/11 specifically induced a rapid and long-lasting SphK1 translocation, independently of canonical Gq/phospholipase C (PLC) signaling. Here, we further characterized Gq/11 regulation of SphK1. SphK1 translocation by the M3 receptor in HEK-293 cells was delayed by expression of catalytically inactive G-protein-coupled receptor kinase-2, p63Rho guanine nucleotide exchange factor (p63RhoGEF), and catalytically inactive PLCβ3, but accelerated by wild-type PLCβ3 and the PLCδ PH domain. Both wild-type SphK1 and catalytically inactive SphK1-G82D reduced M3 receptor-stimulated inositol phosphate production, suggesting competition at Gαq. Embryonic fibroblasts from Gαq/11 double-deficient mice were used to show that amino acids W263 and T257 of Gαq, which interact directly with PLCβ3 and p63RhoGEF, were important for bradykinin B2 receptor-induced SphK1 translocation. Finally, an AIXXPL motif was identified in vertebrate SphK1 (positions 100–105 in human SphK1a), which resembles the Gαq binding motif, ALXXPI, in PLCβ and p63RhoGEF. After M3 receptor stimulation, SphK1-A100E-I101E and SphK1-P104A-L105A translocated in only 25% and 56% of cells, respectively, and translocation efficiency was significantly reduced. The data suggest that both the AIXXPL motif and currently unknown consequences of PLCβ/PLCδ(PH) expression are important for regulation of SphK1 by Gq/11.
The small photoreceptor Photoactive Yellow Protein (PYP) enters a reversible photocycle after excitation with blue light. The intermediate states are formed on timescales ranging from femtoseconds to seconds including chromophore isomerization and protonation as well as large structural rearrangements. To obtain local dynamic information the vibrational label thiocyanate (SCN) can be inserted site-specifically at any desired position in the protein by cysteine mutation and cyanylation. The label's CN stretch vibration is highly sensitive to polarity, hydrogen bonding interactions and electric fields and is spectrally well separated from the overlapping protein absorptions. During the course of this thesis it was impressively demonstrated that the successful incorporation of the SCN label at selected positions in PYP provides a powerful tool to study structure changes and dynamics during the photocycle and enhance the local information that are obtained by infrared (IR) spectroscopic methods. Hence the SCN-labeled protein mutants were studied under equilibrium (steady-state) and non-equilibrium conditions.
Examination of the SCN absorption by FTIR spectroscopy showed the influence of various local environments on the label for different locations in the dark state. The response of the label under illumination with blue light reveals information about structural changes in the signaling state. Additional information for both states were obtained by the vibrational lifetime of the CN vibration measured via ultrafast IR-pump-IR-probe experiments. This observable is particularly sensitive for solvent exposure of the label. Time-resolved IR spectroscopy proved to be an excellent method to follow the protein dynamics throughout most part of the photocycle on a hundreds of femtoseconds to milliseconds timescale. By close inspection of protein and chromophore dynamics in wildtype-PYP over nine decades in time, new insights into the changes leading to the proposed photocycle intermediates were obtained. The investigation of the SCN label allowed to follow the different transient structure changes with high local resolution. Depending on its position within the protein the response of the label provided additional information on the photocycle transitions.
The insights that are obtained by the different observables in the steady-state and by the reaction of the SCN label to formation of the different intermediate states during the photocycle contribute to an improved understanding of local, light-induced structure changes in the photoreceptor PYP. This comprehensive study demonstrated the potential provided by the application of SCN as IR label for investigation of protein dynamics.
Blessing, Recha ; Ahoopai, Majid ; Geyer, Martin ; Brandt, Moritz ; Zeiher, Andreas M. ; Münzel, Thomas ; Wenzel, Philip ; Gori, Tommaso ; Dimitriadis, Zisis
We sought to determine the effects of the use of a Bioengineered Combo Dual-Therapy CD34 Antibody-Covered Sirolimus-Eluting Coronary Stent (Combo® DTS) in patients with chronic total occlusion (CTO) by evaluating clinical outcomes and by performing an optical coherence tomography (OCT) analysis. We retrospectively analyzed data from 39 patients who had successfully undergone OCT-guided revascularization of a CTO being treated with a Combo® DTS. Clinical assessment, angiography (with quantitative coronary angiography analysis) and OCT examination were performed at baseline and at follow-up. The median follow-up period was 189 days, ranging from 157 to 615 days. At follow-up, revascularization was required due to angiographic restenosis in 40% (14 of 35) of patients. OCT analysis detected neointima proliferation in 23 (76.6%) patients. Neointima formation was often associated with microvessels in 18 patients (60%). Neoatheroslcerosis was observed in 2 (6.6%) patients. Malapposition was found in 4 patients (13.3%), and stent fractures were found in 11 patients (36.6%). Rate of strut coverage was 96.3% at follow-up. In conclusion, the implantation of a Combo® DTS after successful CTO recanalization was associated with a restenosis rate of 40% despite good stent implantation at baseline, proven by OCT. Neointima formation was found as a main contributor to restenosis. Nevertheless, we observed a low rate of major cardiovascular events in our follow-up.
Mit dem Ziel, Erkenntnisse zum individuellen Mobilitätsverhalten im Zusammenhang mit der Gestaltung des umgebenden Verkehrssystems zu gewinnen, wurde im Rahmen des vom Land Hessen geförderten LOEWE-Schwerpunkts „Infrastruktur – Design – Gesellschaft“ im März und April 2019 eine schriftliche Haushaltsbefragung in einem innerstädtischen Gebiet der Großstadt Offenbach am Main durchgeführt (n=701). Der vorliegende Bericht beschreibt die methodische Vorgehensweise bei der Umsetzung und Datenerfassung dieser Erhebung. Dabei wird auf die vorbereitenden Maßnahmen mit Hinblick auf die Erstellung des Fragebogens und weiterer Befragungsmaterialen sowie die Durchführung des Pretests und der eigentlichen Hauptbefragung eingegangen. Um die Bereitschaft einer Teilnahme zu erhöhen, wurden die Haushalte mittels Vorankündigungsschreiben, Pressemitteilung und Erinnerungsrundgang mehrfach kontaktiert. Außerdem wurde ein Teil der Rücksendeumschläge mit Sonderbriefmarken versehen. Abschließend befasst sich der Bericht mit dem Erhebungsrücklauf, der Dateneingabe und -aufbereitung sowie dem ermittelten Antwortverhalten und der Repräsentativität der Stichprobe.
In order to encourage a shift from the car to the more sustainable transport mode of cycling, cycle streets have been implemented in cities all over the world in the last few years. In these shared streets, the entire carriageway is designated for cyclists, while motorized traffic is subordinated. However, evidence on the impact of cycle street interventions related to travel behavior change has been limited until now. Therefore, the objective of this study was to evaluate whether cycle streets are an effective measure to facilitate bicycle use and discourage car use, thus contributing to the aim of promoting sustainable travel. For this purpose, we conducted a written household survey in the German city of Offenbach am Main involving participants affected by a cycle street intervention (n = 701). Based on two stage models of self-regulated behavioral change (SSBC), we identified the participants’ level of willingness to use a bicycle frequently and to reduce car use. By means of bivariate and multivariate statistical methods, we analyzed the influence of awareness, use, and perceptions of the cycle street on the willingness to change behavior towards more sustainable travel. The results show that the intervention has a positive impact on frequent bicycle use, while we observed only a limited effect on car use reduction. Traffic conflicts and car speeding within the cycle street adversely affect the acceptance of the intervention. The study’s findings provide new insights into the actual effects of a cycle street and its potential to encourage sustainable travel behavior.
Highlights
• Explanation of mobility design and its practical, aesthetic and emblematic effects on travel behaviour.
• Review of recent studies on mobility design elements and the promotion of non-motorised travel.
• Discussion of research gaps and methodological challenges of data collection and comparability.
Abstract
To promote non-motorised travel, many travel behaviour studies acknowledge the importance of the built environment to modal choice, for example with its density or mix of uses. From a mobility design theory perspective, however, objects and environments affect human perceptions, assessments and behaviour in at least three different ways: by their practical, aesthetic and emblematic functions. This review of existing evidence will argue that travel behaviour research has so far mainly focused on the practical function of the built environment. For that purpose, we systematically identified 56 relevant studies on the impacts of the built environment on non-motorised travel behaviour in the Web of Science database. The focus of research on the practical design function primary involves land use distribution, street network connectivity and the presence of walking and cycling facilities. Only a small number of papers address the aesthetic and emblematic functions. These show that the perceived attractiveness of an environment and evoked feelings of traffic safety increase the likelihood of walking and cycling. However, from a mobility design perspective, the results of the review indicate a gap regarding comprehensive research on the effects of the aesthetic and emblematic functions of the built environment. Further research involving these functions might contribute to a better understanding of how to promote non-motorised travel more effectively. Moreover, limitations related to survey techniques, regional distribution and the comparability of results were identified.
This paper provides an overview of how to use "big data" for economic research. We investigate the performance and ease of use of different Spark applications running on a distributed file system to enable the handling and analysis of data sets which were previously not usable due to their size. More specifically, we explain how to use Spark to (i) explore big data sets which exceed retail grade computers memory size and (ii) run typical econometric tasks including microeconometric, panel data and time series regression models which are prohibitively expensive to evaluate on stand-alone machines. By bridging the gap between the abstract concept of Spark and ready-to-use examples which can easily be altered to suite the researchers need, we provide economists and social scientists more generally with the theory and practice to handle the ever growing datasets available. The ease of reproducing the examples in this paper makes this guide a useful reference for researchers with a limited background in data handling and distributed computing.
Carotinoide sind Pigmente, die in Pflanzen, Algen, einigen Pilzen und Bakterien vorkommen. Sie spielen eine wichtige Rolle bei der Photosynthese durch Absorption von Licht und beim Lichtschutz. Sie sind verantwortlich für die braunen, roten, orangen und gelben Farben von Obst, Gemüse, Herbstblättern und die Farbe einiger Blumen und Algen. Tiere können keine Carotinoide synthetisieren, daher ist ihre Anwesenheit auf die Nahrungsaufnahme zurückzuführen. Carotinoide sind Tetraterpenoide (40C), die aus Isoprenoidmolekülen (5C) synthetisiert werden. Der Methylerythritol-phosphatweg ist der Carotinoid-Vorläuferweg, der die Isoprenoideinheiten bildet. Carotinoide haben aufgrund ihrer gesundheitlichen Vorteile das Interesse der Nutrazeutika-Industrie geweckt.
Fucoxanthin ist ein Carotinoid, das nur in Kieselalgen, Braunalgen, Haptophyten und einigen Dinoflagellaten vorkommt. Aufgrund seiner Vorteile zur Vorbeugung von Krebs, kognitiven Erkrankungen und Fettleibigkeit sowie seiner antioxidativen Eigenschaften ist Fucoxanthin ein sehr interessantes Molekül fur die Nutrazeutikabranche.
Fucoxanthin hat eine komplexe chemische Struktur mit einer Allenbindung und einer Epoxyketogruppe. Daher wäre seine chemische Synthese kompliziert, da es auch eine stereokontrollierte Synthese erfordert86. Aus diesem Grund ist die Extraktion aus Makroalgen oder Mikroalgen die Methode der Wahl für die kommerzielle Herstellung von Fucoxanthin.
In dieser Arbeit bestand das Ziel darin, die Fucoxanthin-Produktivität in Kieselalgen mit gentechnischen Methoden zu steigern, damit die Zellen mehr Fucoxanthin produzieren. Zu diesem Zweck wurde der Effekt der Insertion zusätzlicher Kopien von Genen in das Genom untersucht, die für geschwindigkeitsbestimmende oder Schlüsselenzyme im Carotinoid- und MEP-Weg kodieren.
Zu Beginn wurden diese Effekte bei einzelnen Mutanten beobachtet. Letztendlich ist es jedoch das Ziel, eine Mutante zu erzeugen, die mehrere geschwindigkeitsbestimmende Enzyme überexprimiert, um auf diese Weise Engpässe zu vermeiden. In früheren Studien erreichten Eilers et al.54 durch die einmalige Überexpression der psy- und dxs-Gene in der Kieselalge P. tricornutum einen 2.4- und 1.8-fachen Anstieg der Fucoxanthin-Spiegel.
In dieser Arbeit führte die Insertion zusätzlicher Kopien der Gene idi und pds2 nicht dazu, dass die Zellen mehr Fucoxanthin produzieren. Im Gegensatz dazu erreichten die Mutanten mit zusätzlichen Kopien der Gen ggpps und mit zusätzlichen Kopien sowohl von psy als auch von dxs seine um 28% bzw. 10% höhere Fucoxanthin-Produktivität pro Million Zellen. Bei diesen Mutanten ist die Gesamtproduktivität jedoch geringer als beim Wildtyp, da ihr Wachstum langsamer als beim Wildtyp ist.
Unter Berücksichtigung der besten Zielgene wurden Mutanten erzeugt, die gleichzeitig zusätzliche Kopien von psy, dxs und ggpps enthielten. Die Mutanten hatten unter sehr niedriegen Lichtbedingungen eine um bis zu 61% höhere Produktivität pro Million Zellen als der Wildtyp. Ausnahmsweise wurden diese Mutanten bei sehr schwachem Licht (10 µE m-2 s-1) gezüchtet, da sie sehr gestresst waren und als Zellklumpen wuchsen. Obwohl die Gesamt-Fucoxanthin-Spiegel in diesen Mutanten unter diesen Bedingungen höher sind als im Wildtyp, sind sie daher niedriger als die Fucoxanthin-Spiegel bei den in anderen Experimenten verwendeten Lichtbedingungen (50 µE m-2 s-1). Als Ergebnis dieser Experimente kann gesagt werden, dass die Belastung der Zellen nach den genetischen Veränderungen untersucht werden muss, da dies zu einer Abnahme der Biomasse und folglich zu einer Abnahme der Fucoxanthinproduktion führt. Alternativ könnte auch eine 2-Stufen-Kultur etabliert werden, in der in einem ersten Schritt eine hohe Biomasse erreicht wird und im zweiten Schritt die Expression der interessierenden Gene induziert wird.
Aufgrund der antioxidativen Eigenschaften von Carotinoiden besteht eine übliche Strategie zur Akkumulation von Carotinoiden darin, die Zellen unter oxidative Stressbedingungen zu setzen. Diese Strategie ist jedoch nicht wirksam für die Anreicherung von Fucoxanthin unter hohen Salzkonzentrationen oder hohen Lichtbedingungen. Bessere Versuchspläne könnten jedoch eine 2-Stufen-Kultur oder adaptive Laborbedingungen gewesen sein.
Eine andere mögliche Strategie zur Erhöhung des Fucoxanthinspiegels wäre die Durchführung einer zufälligen Mutagenese der Zellen. Auf diese Weise sind keine Vorkenntnisse über den Carotinoidsyntheseweg und seine Regulation erforderlich und es kann zu Veränderungen in Genen führen, die keine offensichtlichen Ziele sind.
Experimente mit zufälliger Mutagenese erfordern ein Hochdurchsatz-Screeningsystem, da Hunderte oder sogar Tausende von Mutanten erhalten werden. Eine mögliche Strategie, um die Kultivierung der hohen Anzahl von Mutanten zu vereinfachen, ist die Einkapselung dieser Mutanten in Alginatkügelchen. Auf diese Weise können alle Mutanten in demselben Gefäß kultiviert werden. Die eingekapselten Zellen können dann beispielsweise mit einem Durchflusszytometer auf große Partikel durch Fluoreszenz- oder Absorptionsmessungen gescreent werden.
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Schon früh im 19. Jahrhundert wurde der Treibhauseffekt entdeckt. Doch bis sich die Menschheit ihres Einflusses auf das globale Klima bewusst wurde, hat es noch viele Jahrzehnte gedauert. Ein Rückblick auf das zähe Ringen darum, aus wissenschaftlichen Erkenntnissen die richtigen politischen Schritte abzuleiten.
This article corrects the following: Hope in political philosophy,
Claudia Blöser Jakob Huber Darrel Moellendorf. Volume 15Issue 5Philosophy Compass First Published online: April 17, 2020.
It has come to the author's attention that the reference citation of ‘Meirav, 2009’ on page 2 of his published article entitled, ‘Hope in political philosophy’ does not provide bibliographical details regarding the article and does not include it in its list of works cited.
Here is the bibliographical information: Meirav, A. (2009). The nature of hope. Ratio, 22, 216–233.
Hope in political philosophy
(2020)
The language of hope is a ubiquitous part of political life, but its value is increasingly contested. While there is an emerging debate about hope in political philosophy, an assessment of the prevalent scepticism about its role in political practice is still outstanding. The aim of this article is to provide an overview of historical and recent treatments of hope in political philosophy and to indicate lines of further research. We argue that even though political philosophy can draw on recent analyses of hope in analytic philosophy, there are distinct challenges for an account of hope in political contexts. Examples such as racial injustice or climate change show the need for a systematic normative account that is sensitive to the unavoidability of hope in politics as much as its characteristic dangers.
APPEAL‐1: A pan‐European survey of patient/caregiver perceptions of peanut allergy management
(2020)
Blümchen, Katharina ; DunnGalvin, Audrey ; Timmermans, Frans ; Regent, Lynne ; Schnadt, Sabine ; Podestà, Marcia ; Sánchez, Angel ; Couratier, Pascale ; Feeney, Mary ; Hjorth, Betina ; Patel, Ram ; Lush, Tessa ; Ryan, Robert ; Vereda, Andrea ; Fisher, Helen R. ; Fernández‐Rivas, Montserrat
Background: Peanut allergy (PA) is associated with marked quality‐of‐life (QoL) impairment. However, data are lacking on the experience and impact of living with PA from the perspectives of persons with PA (PwPA) and their caregivers. Allergy to Peanuts imPacting Emotions And Life study 1 (APPEAL‐1) was a pan‐European survey investigating these perspectives. This first of two articles reports clinical characteristics of PwPA and PA management practices.
Methods: APPEAL‐1 was a quantitative, online survey conducted in eight European countries, developed by eight representatives of patient advocacy groups and five healthcare professionals and researchers. Eligible participants included adults with PA and parents/caregivers of PwPA who responded by self‐report and provided proxy‐report for the PwPA under their care. Data were summarized using nonweighted descriptive statistics.
Results: Of 1846 completed/analysed questionnaires, 528 were from adults with PA (self‐report); 437 by proxy for children with PA (34 aged 0‐3 years, 287 aged 4‐12 years, 116 aged 13‐17 years) and 881 from parents/caregivers (self‐report). Of PwPA (N = 965), 95% reported diagnosis by healthcare professionals, mostly by clinical history and peanut‐specific allergy testing. Rates of allergic rhinitis, asthma and other food allergies in PwPA were 50%, 42% and 79%, respectively. Only 31% of PwPA received HCP advice/support following their worst allergic reaction, and 28% had not been prescribed an adrenaline auto‐injector. Results were similar by country but varied by age group.
Conclusions: The APPEAL‐1 findings contribute to greater understanding of PA impact on PwPA, caregivers and family members and the need for improved PA management across Europe.
A new virus, SARS-CoV-2, emerged in the Chinese city of Wuhan at the end of 2019. Infected persons developed an atypical form of pneumonia, later known as COVID-19. The pathogen created a pandemic, with fatalities throughout the world, and also led to the adoption of restrictive measures which were, until recently, unthinkable, as well as fostering new political conflicts. Even the path of the multilateral order in its current form is at stake. For a take on these issues under international law, the legal regime of the World Health Organization (WHO) and its response to the pandemic provides an insightful access. ...
Bojkova, Denisa ; Bechtel, Marco ; McLaughlin, Katie-May ; McGreig, Jake E. ; Klann, Kevin ; Bellinghausen, Carla ; Rohde, Gernot Gerhard Ulrich ; Jonigk, Danny David ; Braubach, Peter ; Ciesek, Sandra ; Münch, Christian ; Wass, Mark N. ; Michaelis, Martin ; Cinatl, Jindrich
Severe acute respiratory syndrome virus 2 (SARS-CoV-2) is the cause of the current coronavirus disease 19 (COVID-19) pandemic. Protease inhibitors are under consideration as virus entry inhibitors that prevent the cleavage of the coronavirus spike (S) protein by cellular proteases. Herein, we showed that the protease inhibitor aprotinin (but not the protease inhibitor SERPINA1/alpha-1 antitrypsin) inhibited SARS-CoV-2 replication in therapeutically achievable concentrations. An analysis of proteomics and translatome data indicated that SARS-CoV-2 replication is associated with a downregulation of host cell protease inhibitors. Hence, aprotinin may compensate for downregulated host cell proteases during later virus replication cycles. Aprotinin displayed anti-SARS-CoV-2 activity in different cell types (Caco2, Calu-3, and primary bronchial epithelial cell air–liquid interface cultures) and against four virus isolates. In conclusion, therapeutic aprotinin concentrations exert anti-SARS-CoV-2 activity. An approved aprotinin aerosol may have potential for the early local control of SARS-CoV-2 replication and the prevention of COVID-19 progression to a severe, systemic disease.
Bojkova, Denisa ; Costa, Rui ; Bechtel, Marco ; Ciesek, Sandra ; Michaelis, Martin ; Cinatl, Jindrich
It becomes more and more obvious that deregulation of host metabolism play an important role in SARS-CoV-2 pathogenesis with implication for increased risk of severe course of COVID-19. Furthermore, it is expected that COVID-19 patients recovered from severe disease may experience long-term metabolic disorders. Thereby understanding the consequences of SARS-CoV-2 infection on host metabolism can facilitate efforts for effective treatment option. We have previously shown that SARS-CoV-2-infected cells undergo a shift towards glycolysis and that 2-deoxy-D-glucose (2DG) inhibits SARS-CoV-2 replication. Here, we show that also pentose phosphate pathway (PPP) is remarkably deregulated. Since PPP supplies ribonucleotides for SARS-CoV-2 replication, this could represent an attractive target for an intervention. On that account, we employed the transketolase inhibitor benfooxythiamine and showed dose-dependent inhibition of SARS-CoV-2 in non-toxic concentrations. Importantly, the antiviral efficacy of benfooxythiamine was further increased in combination with 2DG.
Bojkova, Denisa ; McGreig, Jake E. ; McLaughlin, Katie-May ; Masterson, Stuart G. ; Widera, Marek ; Krähling, Verena ; Ciesek, Sandra ; Wass, Mark N. ; Michaelis, Martin ; Cinatl, Jindrich
SARS-CoV-2 is a novel coronavirus currently causing a pandemic. We show that the majority of amino acid positions, which differ between SARS-CoV-2 and the closely related SARS-CoV, are differentially conserved suggesting differences in biological behaviour. In agreement, novel cell culture models revealed differences between the tropism of SARS-CoV-2 and SARS-CoV. Moreover, cellular ACE2 (SARS-CoV-2 receptor) and TMPRSS2 (enables virus entry via S protein cleavage) levels did not reliably indicate cell susceptibility to SARS-CoV-2. SARS-CoV-2 and SARS-CoV further differed in their drug sensitivity profiles. Thus, only drug testing using SARS-CoV-2 reliably identifies therapy candidates. Therapeutic concentrations of the approved protease inhibitor aprotinin displayed anti-SARS-CoV-2 activity. The efficacy of aprotinin and of remdesivir (currently under clinical investigation against SARS-CoV-2) were further enhanced by therapeutic concentrations of the proton pump inhibitor omeprazole (aprotinin 2.7-fold, remdesivir 10-fold). Hence, our study has also identified anti-SARS-CoV-2 therapy candidates that can be readily tested in patients.
Bojkova, Denisa ; Westhaus, Sandra ; Costa, Rui ; Timmer, Lejla ; Funkenberg, Nora ; Korencak, Marek ; Streeck, Hendrik ; Vondran, Florian ; Bröring, Ruth ; Heinrichs, Stefan ; Lang, Karl Sebastian ; Ciesek, Sandra
Direct acting antivirals (DAAs) revolutionized the therapy of chronic hepatitis C infection. However, unexpected high recurrence rates of hepatocellular carcinoma (HCC) after DAA treatment became an issue in patients with advanced cirrhosis and fibrosis. In this study, we aimed to investigate an impact of DAA treatment on the molecular changes related to HCC development and progression in hepatoma cell lines and primary human hepatocytes. We found that treatment with sofosbuvir (SOF), a backbone of DAA therapy, caused an increase in EGFR expression and phosphorylation. As a result, enhanced translocation of EGFR into the nucleus and transactivation of factors associated with cell cycle progression, B-MYB and Cyclin D1, was detected. Serine/threonine kinase profiling identified additional pathways, especially the MAPK pathway, also activated during SOF treatment. Importantly, the blocking of EGFR kinase activity by erlotinib during SOF treatment prevented all downstream events. Altogether, our findings suggest that SOF may have an impact on pathological processes in the liver via the induction of EGFR signaling. Notably, zidovudine, another nucleoside analogue, exerted a similar cell phenotype, suggesting that the observed effects may be induced by additional members of this drug class.
Adaptormoleküle zur Rekrutierung von Transkriptionsfaktoren oder miRNAs an nicht native Bindestellen
(2020)
Die Kontrolle der Genexpression ist eines der großen Ziele der chemischen Biologie. Gemäß dem klassischen Dogma der Molekularbiologe verläuft der Fluss der genetischen Information über die Transkription von DNA zur messenger RNA (mRNA) und durch die Translation von mRNA zu Proteinen. Auch wenn der ursprünglichen Formulierung dieses Dogmas verschiedene Aspekte hinzugefügt wurden, bleibt die Kernaussage unverändert. Eine Störung der Genexpression ist in vielen Fällen die Ursache für schwerwiegende Erkrankungen. Klassische Therapeutika, die im Allgemeinen aus kleinen Molekülen bestehen, können pathogene Proteine spezifisch binden und inhibieren. Allerdings greifen diese Wirkstoffe am Ende der Produktionskette ein und nicht alle Proteine können adressiert werden. Im Gegensatz dazu könnte ein Eingriff auf der Ebene der Transkription oder Translation die Expression der pathogenen Proteine auf ein normales Maß senken oder ganz verhindern. Als entscheidende Regulatoren der Genexpression stellen Transkriptionsfaktoren (TFs) einen interessanten Angriffspunkt zur Kontrolle der Transkription dar. TFs können über den Kontakt zu weiteren Proteinen die RNA Polymerase II rekrutieren und so die Transkription starten. Für die Translation ist die Halbwertszeit der mRNA ein entscheidender Faktor. Die Lebensdauer wird durch eine Vielzahl an Proteinen und micro RNAs (miRNAs) reguliert. MiRNAs sind kurze Oligonukleotide, die in Argonautproteine eingebaut werden können. Die daraus resultierenden RNA-induced silencing complexes (RISCs) sind in der Lage, den Abbau der mRNA einzuleiten. Sowohl TFs als auch RISCs besitzen dabei Nukleinsäure-bindende Untereinheiten, die mit spezifische Sequenzen assoziieren. In gewisser Weise ist die molekulare Erkennung der Nukleinsäuren vergleichbar mit einer Postsendung, die aufgrund der Adresse korrekt zugestellt wird. Um in diesem Bild des täglichen Lebens zu bleiben: Bei einem Wechsel des Wohnorts ist es üblich, einen Nachsendeauftrag zu stellen. Dabei wird die alte Anschrift auf den Postsendungen mit einem neuen Adressetikett überklebt und die Zustellung erfolgt an den neuen Wohnort. Das zentrale Thema dieser Dissertation ist, dieses „Umetikettieren“ auch auf TFs und RISCs zu übertragen. Hierbei ist es notwendig, die Nukleinsäure-bindenden Untereinheiten der Komplexe, also die „alte Adresse“, vollständig zu blockieren und gleichzeitig eine hohe Affinität zu einer neuen Sequenz zu erzeugen. Hierzu könnten bifunktionale Adaptormoleküle verwendet werden.
Die Adaptoren für die Rekrutierung von TFs müssen in der Lage sein, sowohl die doppelsträngige DNA (dsDNA) als auch einen TF zu binden (Abbildung I). Dabei sollte eine Selbstbindung des Adaptors vermieden werden. In dieser Arbeit wurde der TF Sp1 als Ziel gewählt, da er an GC-reiche dsDNAs bindet. Dies ermöglicht die Wahl einer AT- oder GA reichen DNA-Sequenz als Ziel der Umleitung, wodurch eine Selbstbindung des Adaptors minimiert werden sollte. Zur Erkennung der DNA war geplant, Pyrrol-Imidazol-Polyamide (PIPs), triplexbildende Oligonukleotide (TFOs) oder pseudokomplementäre PNAs einzusetzen. Für Letztere war es möglich, eine neue Syntheseroute zu einem Fmoc geschützten Thiouracil-Monomer zu entwerfen. Dabei konnte eine selektive Alkylierung an der N1-Position des Thiouracils durchgeführt werden. Auf Basis der PIPs und der TFOs wurden jeweils verschiedene Adaptoren entworfen, deren Bindung zu ihren Zielen mit Band-Shift-Experimenten und im Fall der PIPs zusätzlich mit fluoreszenzbasierten Pulldown-Experimenten gezeigt wurde. Im Rahmen dieser Versuche zeigte sich, dass die PIP-basierten Systeme deutlich besser an die Zielsequenzen banden als die TFO-basierten Adaptoren. Das Konjugat K5a besaß hierbei die besten Eigenschaften. Weiterhin konnte mit diesem Adaptor in Pulldown-Experimenten gezeigt werden, dass Sp1 auf eine nicht kanonische AT-reiche Bindestelle umgeleitet wurde. Im Anschluss konnte das Sp1 in Western-Blots detektiert werden. Des Weiteren ließ sich zeigen, dass K5a in einem HeLa Lysat über mehrere Stunden stabil war und somit eine Anwendung in Zellkulturexperimenten möglich sein sollte.
Für die Rekrutierung der RISCs war lediglich eine Erkennung zweier einzelsträngiger RNA-Abschnitte notwendig. Hierzu wurden zwei LNAs oder LNA/DNA-Mixmere verwendet, die über einen Linker verknüpft waren (Abbildung I). Als Folge dieses Aufbaus mussten die beiden Adaptorhälften orthogonal sein, da eine Selbstbindung des Adaptors leichter als bei den TF-Adaptoren auftreten konnte. Diese Adaptoren wurden mit Band-Shift- und fluoreszenzbasierten Pulldown-Experimenten auf ihre Fähigkeit, eine Cy5-gelabelte miRNA auf eine Ziel-RNA umzuleiten, überprüft. Es konnte beobachtet werden, dass all-LNA Adaptoren sehr viele off-target-Effekt aufwiesen, welche die Umleitung von miRNAs verhinderte. Im Gegensatz dazu konnten mit DNA/LNA-Mixmeren eine vollständige Umleitung von miRNA-Modellen beobachtet werden. Es war ebenfalls möglich, spezifische RISCs aus HeLa-Lysaten mit unterschiedlichen Adaptoren in Pulldown-Experimenten zu isolieren und in nachfolgenden Western-Blots zu detektieren. Nachdem gezeigt war, dass eine Umleitung in vitro gelang, sollte die Funktion der Adaptoren in Zellkulturexperimenten geprüft werden. Allerdings konnten in diesen Versuchen keine eindeutigen Ergebnisse erhalten werden, sodass die biologische Relevanz der RISC-Umleitung bislang noch nicht bestätigt werden konnte.
Redirection of miRNA‐argonaute complexes to specific target sites by synthetic adaptor molecules
(2020)
Bolz, Mathias ; Thomas, Laura ; Scheffer, Ute ; Kalden, Elisabeth ; Hartmann, Roland K. ; Göbel, Michael
Dysregulation of miRNAs is connected with a multitude of diseases for which antagomirs and miRNA replacement are discussed as therapeutic options. Here, we suggest an alternative concept based on the redirection of RISCs to non‐native target sites. Metabolically stable DNA‐LNA mixmers are used to mediate the binding of RISCs to mRNAs without any direct base complementarity to the presented guide RNA strand. Physical redirection of a dye‐labeled miRNA model and of specific miRNA‐programmed RISC fractions present in HeLa extracts is demonstrated by pull‐down experiments with biotinylated capture oligonucleotides.
This paper explores how University as social entity has great potential to confront epistemic injustices by expanding epistemic capabilities. To do this, we primarily follow the contributions of scholars such as Miranda Fricker and José Medina. The epistemic capabilities and epistemic injustice nexus will be explored via two empirical cases: the first one is an experience developed in Lagos (Nigeria) using participatory video; the second is a service learning pedagogical strategy for final year undergraduate students conducted at Universidad de Ibagué (in Colombia). The Lagos experience shows how participatory action-research methodologies could promote epistemic capabilities and functioning, making it possible for the participants to generate interpretive materials to speak of their own realities. However, this experience is too limited to address testimonial and hermeneutical injustice. The Colombian experience is a remarkable experience that is building epistemic capabilities among students and other local participants. However, there is a hermeneutical and structural injustice that tends to give more value to disciplinary and codified knowledge at the expense of experiential and tacit knowledge.
Boot, Arnoud ; Carletti, Elena ; Haselmann, Rainer ; Kotz, Hans-Helmut ; Krahnen, Jan Pieter ; Pelizzon, Loriana ; Schaefer, Stephen ; Subrahmanyam, Marti G.
The spreading of the Covid-19 virus causes a reduction in economic activity worldwide and may lead to new risks to financial stability. The authors draw attention to the urgency of the targeted mitigation strategies on the European level and suggest taking coordinated action on the fiscal side to provide liquidity to affected firms in the corporate sector. Otherwise, virus-related cashflow interruptions could lead to a new full-blown banking crisis. Monetary policy measures are unlikely to mitigate cash liquidity shortages at the level of individual firms. Coordinated action at European level is decisive to prevent markets from losing confidence in the resilience of banks, particularly in countries with limited fiscal capacity. In contrast to the euro crisis of 2011, the cause of the current crisis does not lie in the financial markets; therefore, the risk of moral hazard for banks or states is low.
Boot, Arnoud ; Carletti, Elena ; Kotz, Hans-Helmut ; Krahnen, Jan Pieter ; Pelizzon, Loriana ; Subrahmanyam, Marti G.
This Policy Letter presents a proposal for designing a program of government assistance for firms hurt by the Coronavirus crisis in the European Union (EU). In our recent Policy Letter 81, we introduced a new, equity-type instrument, a cash-against-tax surcharge scheme, bundled across firms and countries in a European Pandemic Equity Fund (EPEF). The present Policy Letter 84 focuses on the principles and conditions relevant for the operationalization of a EPEF. Our proposal has several desirable features. It: a) offers better risk sharing opportunities, augmenting the resilience of businesses and EU economies; b) is need-based, thereby contributing to an effective use of resources; c) builds on conditions and credible controls, addressing adverse selection and moral hazard; d) is accessible to smaller and medium-sized firms, the backbone of Europe’s economy; e) applies Europe-wide uniform eligibility criteria, strengthening support among member states; f) is a scheme of limited duration, reducing (perceived) government interference in businesses; g) creates a template for a growth-oriented public policy, aligning public and private sector interests; and h) builds on the existing institutional infrastructure and requires minimal legislative adjustments.
Boot, Arnoud ; Carletti, Elena ; Kotz, Hans-Helmut ; Krahnen, Jan Pieter ; Pelizzon, Loriana ; Subrahmanyam, Marti G.
This policy letter adds to the current discussion on how to design a program of government assistance for firms hurt by the Coronavirus crisis. While not pretending to provide a cure-all proposal, the advocated scheme could help to bring funding to firms, even small firms, quickly, without increasing their leverage and default risk. The plan combines outright cash transfers to firms with a temporary, elevated corporate profit tax at the firm level as a form of conditional payback. The implied equity-like payment structure has positive risk-sharing features for firms, without impinging on ownership structures. The proposal has to be implemented at the pan-European level to strengthen Euro area resilience.
Boot, Arnoud ; Carletti, Elena ; Kotz, Hans-Helmut ; Krahnen, Jan Pieter ; Pelizzon, Loriana ; Subrahmanyam, Marti G.
Booz, Christian ; Yel, Ibrahim ; Wichmann, Julian ; Böttger, Sabine ; Al Kamali, Ahmed ; Albrecht, Moritz Hans Ernst ; Martin, Simon S. ; Lenga, Lukas Fabian ; Huizinga, Nicole A. ; D’Angelo, Tommaso ; Cavallaro, Marco ; Vogl, Thomas J. ; Bodelle, Boris
Background: Bone age (BA) assessment performed by artificial intelligence (AI) is of growing interest due to improved accuracy, precision and time efficiency in daily routine. The aim of this study was to investigate the accuracy and efficiency of a novel AI software version for automated BA assessment in comparison to the Greulich-Pyle method.
Methods: Radiographs of 514 patients were analysed in this retrospective study. Total BA was assessed independently by three blinded radiologists applying the GP method and by the AI software. Overall and gender-specific BA assessment results, as well as reading times of both approaches, were compared, while the reference BA was defined by two blinded experienced paediatric radiologists in consensus by application of the Greulich-Pyle method.
Results: Mean absolute deviation (MAD) and root mean square deviation (RSMD) were significantly lower between AI-derived BA and reference BA (MAD 0.34 years, RSMD 0.38 years) than between reader-calculated BA and reference BA (MAD 0.79 years, RSMD 0.89 years; p < 0.001). The correlation between AI-derived BA and reference BA (r = 0.99) was significantly higher than between reader-calculated BA and reference BA (r = 0.90; p < 0.001). No statistical difference was found in reader agreement and correlation analyses regarding gender (p = 0.241). Mean reading times were reduced by 87% using the AI system.
Conclusions: A novel AI software enabled highly accurate automated BA assessment. It may improve efficiency in clinical routine by reducing reading times without compromising the accuracy compared with the Greulich-Pyle method.
Tiere erlauben einen ertragreichen Zugriff auf Büchners literarisches Werk. Exemplarisch zeigt sich dies an der »Hühnerlaus« aus dem Woyzeck. Ein Animal Reading dieses Tieres entfaltet zunächst vor dem wissensgeschichtlichen Hintergrund der Parasitenforschung die Rätselhaftigkeit von Büchners literarischer Hühnerlaus und schlägt dann vier mögliche Perspektiven vor, wie diese Rätselhaftigkeit für eine Interpretation fruchtbar gemacht werden kann: einen editionsphilologischen Lesartenstreit, die Debatten um den Wissenshorizont des Autors und seiner Figuren, eine Verortung in der Geschichte der Biotheorie sowie die Frage nach einer Tier-Ästhetik der Groteske.
Este artigo tem por objetivo analisar comparativamente as semelhanças contidas nas críticas à democracia liberal presentes em alguns trabalhos selecionados de Carl Schmitt (1888-1985) e Robert Kurz (1943-2012). A despeito da estreita associação do primeiro autor com o regime nazista após 1933 e do segundo ser normalmente caracterizado como um pensador marxista (embora bastante crítico ao marxismo “ortodoxo”), são verificáveis inúmeras similitudes entre ambos quando se propõem a analisar as características do liberalismo parlamentar das democracias do século XX. Uma hipótese que pode explicar tais semelhanças seria a influência exercida por Schmitt sobre diversos teóricos da escola de Frankfurt, com os quais Kurz frequentemente dialoga em seus escritos e que foram inspiradores de algumas de suas reflexões – em especial, Walter Benjamin, Theodor Adorno e Max Horkheimer, embora Schmitt também tenha influenciado Franz Neumann, Otto Kirchheimer, Karl Korsch e Herbert Marcuse. Outra via de interpretação abordada aqui se refere à possibilidade de Schmitt ter encontrado, em suas teorias sobre o Estado e sobre o direito, os limites epistemológicos do liberalismo moderno, o que constitui o principal objeto de pesquisa de Kurz e foi tema recorrente nos escritos dos teóricos de Frankfurt.
Borsch, Thomas ; Stevens, Albert-Dieter ; Häffner, Eva ; Güntsch, Anton ; Berendsohn, Walter G. ; Appelhans, Marc Sebastian ; Barilaro, Christina ; Beszteri, Bánk ; Blattner, Frank R. ; Bossdorf, Oliver ; Dalitz, Helmut ; Dressler, Stefan ; Duque-Thüs, Rhinaixa ; Esser, Hans-Joachim ; Franzke, Andreas ; Goetze, Dethardt ; Grein, Michaela ; Grünert, Uta ; Hellwig, Frank ; Hentschel, Jörn ; Hörandl, Elvira ; Janßen, Thomas ; Jürgens, Norbert ; Kadereit, Gudrun ; Karisch, Timm ; Koch, Marcus ; Müller, Frank ; Müller, Jochen ; Ober, Dietrich ; Porembski, Stefan ; Poschlod, Peter ; Printzen, Christian ; Röser, Martin ; Sack, Peter ; Schlüter, Philipp M. ; Schmidt, Marco ; Schnittler, Martin ; Scholler, Markus ; Schultz, Matthias ; Seeber, Elke ; Simmel, Josef ; Stiller, Michael ; Thiv, Mike ; Thüs, Holger ; Tkach, Natalia ; Triebel, Dagmar ; Warnke, Ursula ; Weibulat, Tanja ; Wesche, Karsten ; Yurkov, Andrey ; Zizka, Georg
Plants, fungi and algae are important components of global biodiversity and are fundamental to all ecosystems. They are the basis for human well-being, providing food, materials and medicines. Specimens of all three groups of organisms are accommodated in herbaria, where they are commonly referred to as botanical specimens.The large number of specimens in herbaria provides an ample, permanent and continuously improving knowledge base on these organisms and an indispensable source for the analysis of the distribution of species in space and time critical for current and future research relating to global biodiversity. In order to make full use of this resource, a research infrastructure has to be built that grants comprehensive and free access to the information in herbaria and botanical collections in general. This can be achieved through digitization of the botanical objects and associated data.The botanical research community can count on a long-standing tradition of collaboration among institutions and individuals. It agreed on data standards and standard services even before the advent of computerization and information networking, an example being the Index Herbariorum as a global registry of herbaria helping towards the unique identification of specimens cited in the literature.In the spirit of this collaborative history, 51 representatives from 30 institutions advocate to start the digitization of botanical collections with the overall wall-to-wall digitization of the flat objects stored in German herbaria. Germany has 70 herbaria holding almost 23 million specimens according to a national survey carried out in 2019. 87% of these specimens are not yet digitized. Experiences from other countries like France, the Netherlands, Finland, the US and Australia show that herbaria can be comprehensively and cost-efficiently digitized in a relatively short time due to established workflows and protocols for the high-throughput digitization of flat objects.Most of the herbaria are part of a university (34), fewer belong to municipal museums (10) or state museums (8), six herbaria belong to institutions also supported by federal funds such as Leibniz institutes, and four belong to non-governmental organizations. A common data infrastructure must therefore integrate different kinds of institutions.Making full use of the data gained by digitization requires the set-up of a digital infrastructure for storage, archiving, content indexing and networking as well as standardized access for the scientific use of digital objects. A standards-based portfolio of technical components has already been developed and successfully tested by the Biodiversity Informatics Community over the last two decades, comprising among others access protocols, collection databases, portals, tools for semantic enrichment and annotation, international networking, storage and archiving in accordance with international standards. This was achieved through the funding by national and international programs and initiatives, which also paved the road for the German contribution to the Global Biodiversity Information Facility (GBIF).Herbaria constitute a large part of the German botanical collections that also comprise living collections in botanical gardens and seed banks, DNA- and tissue samples, specimens preserved in fluids or on microscope slides and more. Once the herbaria are digitized, these resources can be integrated, adding to the value of the overall research infrastructure. The community has agreed on tasks that are shared between the herbaria, as the German GBIF model already successfully demonstrates.We have compiled nine scientific use cases of immediate societal relevance for an integrated infrastructure of botanical collections. They address accelerated biodiversity discovery and research, biomonitoring and conservation planning, biodiversity modelling, the generation of trait information, automated image recognition by artificial intelligence, automated pathogen detection, contextualization by interlinking objects, enabling provenance research, as well as education, outreach and citizen science.We propose to start this initiative now in order to valorize German botanical collections as a vital part of a worldwide biodiversity data pool.
Bothou, Christina ; Rüschenbaum, Sabrina ; Kubesch, Alica ; Quenstedt, Leonie ; Schwarzkopf, Katharina ; Welsch, Christoph ; Zeuzem, Stefan ; Welzel, Tania Mara ; Lange, Christian Markus
Background: While systemic inflammation is recognized as playing a central role in the pathogenesis of organ failures in patients with liver cirrhosis, less is known about its relevance in the development of classical hepatic decompensation. Aim: To characterize the relationship between systemic inflammation, hemodynamics, and anemia with decompensation of liver cirrhosis. Methods: This is a post-hoc analysis of a cohort study of outpatients with advanced liver fibrosis or cirrhosis. Results: Analysis included 338 patients of whom 51 patients (15%) were hospitalized due to decompensation of liver cirrhosis during a median follow-up time of six months. In univariate analysis, active alcoholism (p = 0.002), model of end-stage liver disease (MELD) score (p = 0.00002), serum IL-6 concentration (p = 0.006), heart rate (p = 0.03), low arterial blood pressure (p < 0.05), maximal portal venous flow (p = 0.008), and low hemoglobin concentration (p < 0.00001) were associated with hospitalization during follow-up. Multivariate analysis revealed an independent association of low hemoglobin (OR = 0.62, 95% CI = 0.51–0.78, p = 0.001) and serum IL-6 concentration (OR = 1.02, 95% CI = 1.01–1.04, p = 0.03)—but not of hemodynamic parameters—with hepatic decompensation. An inverse correlation between hemoglobin concentration and portal venous flow (R = −0.362, p < 0.0001) was detected for the non-hospitalized patients. Accuracy of baseline hemoglobin levels for predicting hospitalization (AUC = 0.84, p < 0.000001) was high. Conclusion: Anemia and systemic inflammation, rather than arterial circulatory dysfunction, are strong and independent predictors of hepatic decompensation in outpatients with liver cirrhosis.
Opportunities and challenges for paleoaltimetry in "small" orogens: insights from the European Alps
(2020)
Botsyun, Svetlana ; Ehlers, Todd A. ; Mutz, Sebastian G. ; Methner, Katharina ; Krsnik, Emilija ; Mulch, Andreas
Many stable isotope paleoaltimetry studies have focused on paleoelevation reconstructions of orogenic plateaus such as the Tibetan or Andean Plateaus. We address the opportunities and challenges of applying stable isotope paleoaltimetry to “smaller” orogens. We do this using a high‐resolution isotope tracking general circulation model (ECHAM5‐wiso) and explore the precipitation δ18O (δ18Op) signal of Cenozoic paleoclimate and topographic change in the European Alps. Results predict a maximum δ18Op change of 4–5‰ (relative to present day) during topographic development of the Alps. This signal of topographic change has the same magnitude as changes in δ18Op values resulting from Pliocene and Last Glacial Maximum global climatic change. Despite the similar magnitude of the isotopic signals resulting from topographic and paleoclimate changes, their spatial patterns across central Europe differ. Our results suggest that an integration of paleoclimate modeling, multiproxy approaches, and low‐elevation reference proxy records distal from an orogen improve topographic reconstructions.
The dodecin of Mycobacterium tuberculosis : biological function and biotechnical applications
(2020)
Biological Function of Bacterial Dodecins
In this thesis, the dodecins of Mycobacterium tuberculosis (MtDod), Streptomyces coelicolor (ScDod) and Streptomyces davaonensis (SdDod) were studied. Kinetic measurements of the flavin binding of MtDod revealed that the dodecin binding pocket is filled in two distinct steps, for which a kinetic model then was established and verified by experimental data. The analysis with the two-step model showed that the unique binding pocket of dodecins allows them to bind excessive amounts of flavins, while at low flavin concentrations, flavin is released and only weakly bound. This function of flavin buffering prevents accumulation of free oxidised flavins and therefore helps to keep the redox balance of the cell and prevents potential cell damage caused by excessive free flavins. To further gain insights into the role of bacterial dodecins, the effect of knocking out the dodecin encoding gene in S. davaonensis was analysed. The knockout strain showed increased concentrations of various stress related metabolites, indicating that without dodecin the cellular balance is disrupted, which supports the role of dodecins as a flavin homeostasis factor.
With a self-designed affinity measurement method based on the temperature dependent dissociation of the dodecin:flavin complex, which allowed parallel screening of multiple conditions, it was shown that MtDod, ScDod and SdDod have much higher affinities towards FMN and FAD under acidic conditions. Under these conditions, the three dodecins might function as a FMN storage. M. tuberculosis encounters multiple acidic environments during its infection cycle of humans and can adopt a state of dormancy. During recovery from the dormant state, a flavin storage might be beneficial. For some Streptomyces species it was reported that the formed spores are slightly acidic and therefore ScDod and SdDod could function as flavin storages for the spores. Further details on the flavin binding mechanism of MtDod were revealed by a mutagenesis study, identifying the importance of a histidine residue at the fourth position of the protein sequence for flavin binding, but contrary to expectations, this residue seems only to be partly involved in the pH related affinity shift.
The data, reported in this thesis, demonstrates that bacterial dodecins likely function as flavin homeostasis factors, which allow overall higher flavin pools in the cell without disrupting the cellular balance. Further, the reported acid-dependent increase in binding affinity suggests that under certain conditions bacterial dodecins can also function as a flavin storage system.
Application of the Dodecin of M. tuberculosis
In this thesis, the stability of MtDod, ScDod SdDod and HsDod was analysed to find a suitable dodecin for the use as a carrier/scaffold. Therefore, a method to easily measure the stability of dodecins was designed, which measures the ability of the dodecamer to rebind flavins after a heating phase with stepwise increasing temperatures. Using this assay and testing the stability against detergents by SDS PAGE, showed that the dodecamer of MtDod possesses an excellent stability against a vast array of conditions, like temperatures above 95 °C, low pH and about 2% SDS. By solving the crystal structure of ScDod and SdDod, the latter forming a less stable dodecamer, combined with a mutagenesis study, the importance of a specific salt bridge for dodecamer stability was revealed and might be helpful to find further highly stable dodecins.
In addition to the intrinsic high stability of the MtDod dodecamer, also the robustness of the fold was tested by creating diverse MtDod fusion constructs and producing them in Escherichia coli. Here it was shown that MtDod easily tolerates the attachment of proteins up to 4-times of its own size and that both termini can be modified without affecting the dodecamer noticeably. Further, it was shown that MtDod and many MtDod fusion constructs could be purified in high yields via a protocol based on the removal of E. coli proteins through heat denaturation and subsequent centrifugation. In a case study, by fusing diverse antigens from mostly human proteins to MtDod and using these constructs to produce antibodies in rabbits, it was demonstrated that MtDod is immunogenic and presents the attached antigens to the immune system.
The here reported properties of MtDod and to a lesser degree of other bacterial dodecins, show that bacterial dodecins are a valuable addition to the pool of scaffold and carrier proteins and have great potential as antigen carriers.
Bourdeaux, Florian Alexander ; Kopp, Yannick ; Lautenschläger, Julia ; Gößner, Ines ; Besir, Hüseyin ; Vabulas, R. Martin ; Grininger, Martin
In bioengineering, scaffold proteins have been increasingly used to recruit molecules to parts of a cell, or to enhance the efficacy of biosynthetic or signalling pathways. For example, scaffolds can be used to make weak or non-immunogenic small molecules immunogenic by attaching them to the scaffold, in this role called carrier. Here, we present the dodecin from Mycobacterium tuberculosis (mtDod) as a new scaffold protein. MtDod is a homododecameric complex of spherical shape, high stability and robust assembly, which allows the attachment of cargo at its surface. We show that mtDod, either directly loaded with cargo or equipped with domains for non-covalent and covalent loading of cargo, can be produced recombinantly in high quantity and quality in Escherichia coli. Fusions of mtDod with proteins of up to four times the size of mtDod, e.g. with monomeric superfolder green fluorescent protein creating a 437 kDa large dodecamer, were successfully purified, showing mtDod’s ability to function as recruitment hub. Further, mtDod equipped with SYNZIP and SpyCatcher domains for post-translational recruitment of cargo was prepared of which the mtDod/SpyCatcher system proved to be particularly useful. In a case study, we finally show that mtDod-peptide fusions allow producing antibodies against human heat shock proteins and the C-terminus of heat shock cognate 70 interacting protein (CHIP).
Non-ribosomal peptide synthetases (NRPSs) are the origin of a wide range of natural products, including many clinically used drugs. Engineering of these often giant biosynthetic machineries to produce novel non-ribosomal peptides (NRPs) at high titre is an ongoing challenge. Here we describe a strategy to functionally combine NRPS fragments of Gram-negative and -positive origin, synthesising novel peptides at titres up to 290 mg l-1. Extending from the recently introduced definition of eXchange Units (XUs), we inserted synthetic zippers (SZs) to split single protein NRPSs into up to three independently expressed and translated polypeptide chains. These synthetic type of NRPS (type S) enables easier access to engineering, overcomes cloning limitations, and provides a simple and rapid approach to building peptide libraries via the combination of different NRPS subunits.
Angesichts des kürzlich von der Bundesregierung verabschiedeten Konjunkturpakets, stellen sich die Autoren des Policy Letters die Frage, ob und inwieweit die angekündigte Mehrwertsteuersenkung sowie der Kinderbonus zur substantiellen Ankurbelung des Binnenkonsums führt. Aus den für das Haushaltskrisenbarometer erhobenen Daten zu Einkommensänderungen sowie Einkommens- und Kündigungserwartungen, können die Ökonomen keine zu erwartende Schwächung der Binnennachfrage ableiten. Der überwiegende Teil der deutschen Wohnbevölkerung scheint kurzfristig nicht davon auszugehen, finanzielle Einbußen aufgrund der Pandemie zu erleiden. Die Erwartungen hinsichtlich der künftigen Einkommensentwicklung haben sich gar über die letzten vier Umfragewellen graduell verbessert. Ferner kann dargelegt werden, dass weder die Konsum- noch die Sparneigung durch die Corona-Krise zum gegenwärtigen Zeitpunkt langfristig stark beeinflusst wird. So geben derzeit lediglich 10 Prozent der Befragten an, größere Anschaffungen angesichts der Pandemie vollständig gestrichen zu haben. Anfang April 2020 lag dieser Wert noch bei 16 Prozent. Die Befragten berichteten in 71 Prozent der Fälle ihre Konsumpläne und in 78 Prozent der Fälle ihre Sparverhalten nicht geändert zu haben. Im Lichte dieser Ergebnisse lassen sich Maßnahmen, die auf eine unspezifische Stimulierung der Binnennachfrage abzielen, nicht substantiell begründen und rechtfertigen.
Metabolites such as lactate and free fatty acids (FFAs) abundantly occur in high concentrations in tumor and stromal cells of solid malignancies. Their known functions comprise the allocation of nutrients and intermediates for the generation of cell components, the evasion of immune destruction, the induction of vessel formation and the stimulation of cell migration in order to promote tumor growth, progression and metastasis. However, the role of metabolites as signaling molecules and the downstream mechanisms of metabolite receptor mediated signaling in tumor and stromal cells is poorly understood. Our study confirms the expression of Hydroxycarboxylic acid receptor 1 (HCA1) in solid human breast tumors and the expression of Free fatty acid receptor 4 (FFA4) in solid human colorectal tumors. In addition, the expression of HCA1 in human breast cancer cell lines as well as the expression of FFA4 in human colorectal cancer cell lines was proved. Moreover, our research reveals the expression HCA2, FFA2 and FFA4 in tumor associated macrophages (TAMs).
To test whether the loss of any of the metabolite receptors affects tumor growth and progression we utilized a syngeneic Lewis lung cancer (LLC1) tumor model, an azoxymethane (AOM) – dextran sulfate (DSS) colorectal cancer model and a Mouse mammary tumor virus Polyoma Virus middle T antigen (MMTV-PyMT) breast cancer model. The loss of HCA2 did not lead to a changed outcome compared to wild type littermates in any of the models. Likewise, the deletion of FFA4 had no influence on the LLC1 model and, surprisingly, tumor number and area in the AOM-DSS model also remained unaltered. The impact of HCA1 deficiency was investigated utilizing the MMTV-PyMT model and revealed a moderately improved tumor growth. The absence of FFA2 did not affect tumor growth in the LLC1 model but led to an increased number of colorectal tumors in the AOM-DSS model while the tumor area remained unchanged. The most compelling results were obtained upon the deletion of FFA2 in the MMTV-PyMT model. Here, we demonstrate that the loss of FFA2 significantly reduces tumor latency and also significantly improves tumor growth. Nevertheless, the formation of metastases in the LLC1 model and the MMTV-PyMT model did not show any changes upon the loss of any of the metabolite receptors.
Together, our results describe a tumor-protective effect of FFA2 with an unclear impact on metastatic processes. Considerations about putative mechanisms of short chain fatty acid (SCFA) mediated FFA2 signaling suggest potential targets for pharmacological interventions to treat mammary tumors.
Blockchain verspricht, Intermediäre wie Banken überflüssig zu machen und durch dezentrale Peer-to-Peer-Netzwerke zu ersetzen. Dieser Beitrag stellt die Frage nach der Realisierbarkeit dieser Ankündigung sowie danach, welche gesellschaftlichen Implikationen damit verbunden sind. Eine historisch informierte theoretische Analyse zeigt, dass die Erzeugung von Kreditgeld durch Banken ein für kapitalistische Gesellschaften existenzieller Vorgang ist. Die Fiktion des Geldwerts bedarf ihrerseits glaubwürdiger Intermediäre, die dauerhaft in der Lage sind, die zeitliche und räumliche Stabilität des Geldes zu inszenieren. Explorative Interviews mit Akteuren im Finanzsektor in Kombination mit einer inhaltsanalytischen Auswertung von einschlägigen Blogs, White Papers und Artikeln der Wirtschaftspresse lassen vermuten, dass Blockchain Intermediäre keineswegs ausschaltet, sondern diejenigen mächtiger werden lässt, die in der Lage sind, die Technologie ihren Bedürfnissen entsprechend umzugestalten.
The digitalization of financial services opened a window for new players in the financial industry. These start-ups take on tasks and functions previously reserved for banks, such as financing, asset management, and payments. In this article, we trace the transformation of the industry after digitalization. By using data on FinTech formations in Germany, we provide first evidence that entrepreneurial dynamics in the FinTech sector are not so much driven by technology as by the educational and business background of the founders. Furthermore, we investigate the reactions of traditional banks to the emergence of these start-ups. In contrast with other emerging industries such as biotechnology, a network analysis shows that FinTechs have mostly engaged in strategic partnerships and only a few banks have acquired or obtained a financial interest in a FinTech. We explain the restraint of traditional banks to fully endorse the new possibilities of digitalized financial services with the characteristics of the technology itself and with the postponed fundamental decisions of banks to modernize their IT infrastructure.
For large isospin asymmetries, perturbation theory predicts the quantum chromodynamic (QCD) ground state to be a superfluid phase of u and d¯ Cooper pairs. This phase, which is denoted as the Bardeen-Cooper-Schrieffer (BCS) phase, is expected to be smoothly connected to the standard phase with Bose-Einstein condensation (BEC) of charged pions at μI≥mπ/2 by an analytic crossover. A first hint for the existence of the BCS phase, which is likely characterised by the presence of both deconfinement and charged pion condensation, comes from the lattice observation that the deconfinement crossover smoothly penetrates into the BEC phase. To further scrutinize the existence of the BCS phase, in this article we investigate the complex spectrum of the massive Dirac operator in 2+1-flavor QCD at nonzero temperature and isospin chemical potential. The spectral density near the origin is related to the BCS gap via a generalization of the Banks-Casher relation to the case of complex Dirac eigenvalues (derived for the zero-temperature, high-density limits of QCD at nonzero isospin chemical potential).
Das Konflikterleben von Schiedsrichtern im Amateurfußball : eine empirisch-qualitative Arbeit
(2020)
Bei der Austragung von Amateurfußballspielen nehmen Schiedsrichter die Rolle von Beobachtern ein, die bei Konflikten selbst zu Betroffenen werden können. Dabei treten auch extreme Formen wie Beleidigungen und Diskriminierungen sowie physische und psychische Gewalt auf. Anliegen der Masterthesis „Das Konflikterleben von Schiedsrichtern im Amateurfußball“ ist es, die Wahrnehmung von Schiedsrichtern in Bezug auf Konflikte im Amateurfußball empirisch-qualitativ zu erfassen und bisherige Forschungsansätze zu erweitern. Grundlage der Arbeit bilden vom Autor geführte problemzentrierte Interviews mit hessischen Unparteiischen, deren Auswertung neue Perspektiven im Gewaltdiskurs des Amateurfußballs anbietet.
Bratzel, Fabian ; Heller, Sascha ; Cyrannek, Nadine ; Paule, Juraj ; Leme, Elton M. C. ; Loreth, Anna ; Nowotny, Annika ; Kiefer, Markus ; Till, Walter ; Barfuss, Michael H. J. ; Lexer, Christian ; Koch, Marcus A. ; Zizka, Georg
Background: The angiosperm family Bromeliaceae comprises over 3.500 species characterized by exceptionally high morphological and ecological diversity, but a very low genetic variation. In many genera, plants are vegetatively very similar which makes determination of non flowering bromeliads difficult. This is particularly problematic with living collections where plants are often cultivated over decades without flowering. DNA barcoding is therefore a very promising approach to provide reliable and convenient assistance in species determination. However, the observed low genetic variation of canonical barcoding markers in bromeliads causes problems.
Result. In this study the low-copy nuclear gene Agt1 is identified as a novel DNA barcoding marker suitable for molecular identification of closely related bromeliad species. Combining a comparatively slowly evolving exon sequence with an adjacent, genetically highly variable intron, correctly matching MegaBLAST based species identification rate was found to be approximately double the highest rate yet reported for bromeliads using other barcode markers.
Conclusion. In the present work, we characterize Agt1 as a novel plant DNA barcoding marker to be used for barcoding of bromeliads, a plant group with low genetic variation. Moreover, we provide a comprehensive marker sequence dataset for further use in the bromeliad research community.
Correction to: The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae
(2020)
Bratzel, Fabian ; Heller, Sascha ; Cyrannek, Nadine ; Paule, Juraj ; Leme, Elton M. C. ; Loreth, Anna ; Nowotny, Annika ; Kiefer, Markus ; Till, Walter ; Barfuss, Michael H. J. ; Lexer, Christian ; Koch, Marcus A. ; Zizka, Georg
Correction to: BMC Plant Biol 20, 111 (2020)
https://doi.org/10.1186/s12870-020-2326-5
In the original publication [1] an incorrect version of Additional file 1 was used during typesetting. The incorrect and correct versions of Additional file 1 are available in this correction article. The original article has been updated. The publisher apologizes to the authors and readers for the inconvenience.
Braun, Markus ; Al-Qaysi, Rawya ; Klingelhöfer, Doris ; Müller, Ruth ; Groneberg, Jan David Alexander
Although the big tobacco companies offer the same cigarette brands across countries, little is known about the potential regional differences of the particulate matter (PM) emissions of apparently equal brands. PM emissions of three cigarette brands (Marlboro Gold, Winston Red resp. Classic, Parliament Platinum resp. Night Blue) from the United Arab Emirates (UAE) and Germany were analysed. Second-hand smoke was produced in a 2.88 m3 measuring cabin by an automatic environmental tobacco smoke emitter. PM size fractions PM10, PM2.5, and PM1 were detected in real-time using laser aerosol spectrometry. Depending on the PM fraction Marlboro cigarettes from UAE showed 33%–35% higher PM amounts. Moreover, Winston cigarettes from UAE showed distinctly higher PM values (28–31%) than the German counterparts. The “lighter” Parliament from UAE emitted 3%–9% more PM than the German one. The measured mean PM10 values laid between 778 and 1163 µg/m3 (mean PM2.5: 777–1161 µg/m3; mean PM1: 724–1074 µg/m3). That means smoking in enclosed rooms causes massive PM burden. The PM emission of equal or similar tobacco products from different countries can differ distinctly. Hence, the declaration of PM emission values, besides nicotine, tar, and carbon monoxide amounts, should be obligatory worldwide. Furthermore, complete information about the ingredients and production processes of tobacco products should be provided to health officials and the public. This can help to minimise or ban substances or product designs that make smoking even more harmful, and to enhance the awareness of the risks of smoking.
Braun, Markus ; Klingelhöfer, Doris ; Oremek, Gerhard ; Quarcoo, David ; Groneberg, Jan David Alexander
Children are commonly exposed to second-hand smoke (SHS) in the domestic environment or inside vehicles of smokers. Unfortunately, prenatal tobacco smoke (PTS) exposure is still common, too. SHS is hazardous to the health of smokers and non-smokers, but especially to that of children. SHS and PTS increase the risk for children to develop cancers and can trigger or worsen asthma and allergies, modulate the immune status, and is harmful to lung, heart and blood vessels. Smoking during pregnancy can cause pregnancy complications and poor birth outcomes as well as changes in the development of the foetus. Lately, some of the molecular and genetic mechanisms that cause adverse health effects in children have been identified. In this review, some of the current insights are discussed. In this regard, it has been found in children that SHS and PTS exposure is associated with changes in levels of enzymes, hormones, and expression of genes, micro RNAs, and proteins. PTS and SHS exposure are major elicitors of mechanisms of oxidative stress. Genetic predisposition can compound the health effects of PTS and SHS exposure. Epigenetic effects might influence in utero gene expression and disease susceptibility. Hence, the limitation of domestic and public exposure to SHS as well as PTS exposure has to be in the focus of policymakers and the public in order to save the health of children at an early age. Global substantial smoke-free policies, health communication campaigns, and behavioural interventions are useful and should be mandatory.
Linking epigenetic signature and metabolic phenotype in IDH mutant and IDH wildtype diffuse glioma
(2020)
Braun, Yannick ; Filipski, Katharina Johanna ; Bernatz, Simon ; Baumgarten, Peter ; Roller, Bastian ; Zinke, Jenny ; Zeiner, Pia Susan ; Ilina, Elena ; Senft, Christian ; Ronellenfitsch, Michael Wilfried ; Plate, Karl ; Bähr, Roy Oliver ; Hattingen, Elke ; Steinbach, Joachim Peter ; Mittelbronn, Michel Guy André ; Harter, Patrick Nikolaus
Aims: Changes in metabolism are known to contribute to tumour phenotypes. If and how metabolic alterations in brain tumours contribute to patient outcome is still poorly understood. Epigenetics impact metabolism and mitochondrial function. The aim of this study is a characterisation of metabolic features in molecular subgroups of isocitrate dehydrogenase mutant (IDHmut) and isocitrate dehydrogenase wildtype (IDHwt) gliomas. Methods: We employed DNA methylation pattern analyses with a special focus on metabolic genes, large-scale metabolism panel immunohistochemistry (IHC), qPCR-based determination of mitochondrial DNA copy number and immune cell content using IHC and deconvolution of DNA methylation data. We analysed molecularly characterised gliomas (n = 57) for in depth DNA methylation, a cohort of primary and recurrent gliomas (n = 22) for mitochondrial copy number and validated these results in a large glioma cohort (n = 293). Finally, we investigated the potential of metabolic markers in Bevacizumab (Bev)-treated gliomas (n = 29). Results: DNA methylation patterns of metabolic genes successfully distinguished the molecular subtypes of IDHmut and IDHwt gliomas. Promoter methylation of lactate dehydrogenase A negatively correlated with protein expression and was associated with IDHmut gliomas. Mitochondrial DNA copy number was increased in IDHmut tumours and did not change in recurrent tumours. Hierarchical clustering based on metabolism panel IHC revealed distinct subclasses of IDHmut and IDHwt gliomas with an impact on patient outcome. Further quantification of these markers allowed for the prediction of survival under anti-angiogenic therapy. Conclusion: A mitochondrial signature was associated with increased survival in all analyses, which could indicate tumour subgroups with specific metabolic vulnerabilities.
Acinetobacter baumannii is outstanding for its ability to cope with low water activities and therefore its adaptation mechanism to osmotic stress. Here we report on the identification and characterization of five different secondary active compatible solute transporters, belonging to the betaine-choline-carnitine transporter (BCCT) family. Our studies revealed two choline-specific and three glycine betaine-specific BCCTs. Activity of the BCCTs was differentially dependent to the osmolality: one choline and one betaine transporter were osmostress-independent. Addition of choline to resting cells of Acinetobacter grown in the presence of the co-substrate choline or with phosphatidylcholine as sole carbon source led to ATP synthesis in the wild type but not in the BCCT quadruple mutant. This indicates that the BCCTs are essential to transport the energy substrate choline. The role of the different BCCTs in osmostress resistance and in metabolic adaptation of A. baumannii to the human host is discussed.
This study examined age‐related differences in the effectiveness of two generative learning strategies (GLSs). Twenty‐five children aged 9–11 and 25 university students aged 17–29 performed a facts learning task in which they had to generate either a prediction or an example before seeing the correct result. We found a significant Age × Learning Strategy interaction, with children remembering more facts after generating predictions rather than examples, whereas both strategies were similarly effective in adults. Pupillary data indicated that predictions stimulated surprise, whereas the effectiveness of example‐based learning correlated with children’s analogical reasoning abilities. These findings suggest that there are different cognitive prerequisites for different GLSs, which results in varying degrees of strategy effectiveness by age.
Die CT-Diagnostik gewinnt auch über 100 Jahre nach der Entdeckung der Röntgenstrahlung noch immer weiter an Bedeutung im klinischen Alltag. Insbesondere im Bereich des Stagings und der onkologischen Follow-Up-Untersuchungen zählt die Ganzkörper-CT derzeit vielerorts als diagnostischer Goldstandard. Dabei muss jedoch in Kauf genommen werden, dass es zur Applikation nicht unerheblicher Dosiswerte kommt. Das Risiko von Folgeschäden ist dabei nicht von der Hand zu weisen, wobei das Folgemalignom als besonders gefürchtete Komplikation gilt. Die Optimierung der Computertomographie und die Minimierung möglicher Folgeschäden ist daher Gegenstand konstanter klinischer Forschung. Dennoch muss eine Reduktion der Strahlendosis nur äußerst feinfühlig erfolgen, da sie auf technischer Ebene eng mit der realisierbaren Bildqualität korreliert.
Ziel der vorliegenden Arbeit war es, die Nutzen eines 150 kV + Sn Zinnfilter- Protokolls am Gerät Siemens Somatom Force zu untersuchen. Hierbei sollte vor allem darauf eingegangen werden, wie viel Strahlendosis durch die Implementierung eines solchen Protokolls eingespart werden kann, wie sich das Protokoll auf die subjektive und objektive Bildqualität auswirkt, sowie welcher weitere klinische Nutzen zu erwarten ist. Bisher konnten sich ähnliche Protokolle bereits im Rahmen anderer Fragestellungen als nützlich beweisen.
Insgesamt 40 Patienten mit Ganzkörper-Staging im Rahmen eines Multiplen Myeloms wurden in die Studie inkludiert (28 Frauen, 12 Männer). Diese wurden im vereinbarten Untersuchungszeitraum mit dem durch die Ethikkomission genehmigten Studienprotokoll (150 kV + Sn Force) untersucht und waren jeweils retrospektiv auch Teil der anderen Gruppen gewesen (120 KV Definition AS, 120 KV Flash, 120 kV Force).
Auch wenn der intraindividuelle Vergleich inhärent mit einer höheren statistischen Power einhergeht, wurden sicherheitshalber an vordefinierten Stellen Querdurchmesser der Patienten erhoben, um biometrische Gleichheit zu beweisen.
Hier ließen sich keine signifikanten Unterschiede messen. Die Bilddaten der Patienten wurden randomisiert und doppelt verblindet von zwei dem Projekt fremden und berufserfahrenen Radiologen hinsichtlich der subjektiven Bildqualität ausgewertet. Ein Bezug zu den technischen Hintergrundinformationen der Aufnahme war zu keinem Zeitpunkt möglich.
Anschließend erfolgte die statistische Auswertung objektiver Daten. Zum Vergleich der Bildqualität wurden jeweils gemittelte Schwächungswerte aus Muskeln aus artefaktfreien und aus von Artefakten beladenen Arealen erhoben. Aufgrund des homogenen Charakters der Muskeln wurde die ebenso jeweils gemittelte Standardabweichung dieser Strukturen als Hintergrundrauschen definiert. Hieraus wurde eine SNR errechnet.
Der Vergleich von Dosiswerten erfolgte über die aus dem Patientenprotokoll entnehmbaren Angaben, insbesondere des CTDI. Gemeinsam mit den erhobenen Querdurchmessern wurde hieraus eine SSDE gebildet.
Bei allen subjektiven Vergleichen der Studiengruppe (150 kV + Sn Force) wurde bei jeweils starker Korrelation nach Spearman und starker bis sehr starker Übereinstimmung nach Cohen eine gute bis sehr gute Bildqualität attestiert. Damit stellt das Untersuchungsprotokoll Bilder durchweg besser als das Referenzprotokoll auf den Geräten Somatom Definition AS und Somatom Definition Flash dar. Im Direktvergleich zum Referenzprotokoll auf dem Somatom Force ist das Studienprotokoll jeweils mindestens gleichwertig.
Im objektiven Vergleich der Bildqualität zeigte sich als Gütekriterium zunächst, dass Muskeln artefaktfreier Areale in allen vier Gruppen gleich gut dargestellt werden. Bereits bei der Betrachtung der Schwächungswerte artefaktbeladener Muskeln wurde deutlich, dass die anderen Protokolle mit signifikant höherem Signalverlust zu kämpfen haben. Auch das Bildpunktrauschen war in der Studiengruppe (150 kV + Sn Force) überwiegend signifikant niedriger, als das der anderen Gruppen. Lediglich in Artefaktarealen des Untersuchungsabschnitts cCT/HWS konnte die Gruppe 120 kV Force vergleichbar niedrige Rauschwerte aufweisen (p = 1), der Vergleich der SNR wiederholte dieses Ergebnis.
CTDI und SSDE der Gruppe
150 kV Force zeigten im Untersuchungsabschnitt cCT/HWS insbesondere der Gruppe 120 kV Force gegenüber signifikante Dosiseinsparungen von ca. 42 %, im Abschnitt Tho-Knie sogar 64%.
Zusammenfassend zeigte sich durch die Implementierung des Studienprotokolls also mehrheitlich eine Verbesserung sowohl der subjektiven, als auch der objektiven Bildqualität. Bei einer durchschnittlichen Reduktion der applizierten Strahlendosis von ca. 40-60 % (gegenüber dem Referenzprotokoll am Somatom Force) ist der Einsatz des Studienprotokolls für die hier untersuchte Fragestellung im klinischen Alltag also uneingeschränkt zu empfehlen.
Neste artigo trataremos de entender quais foram as principais propostas de Theodor W. Adorno, filósofo alemão e membro da Escola de Frankfurt, para a educação de seu tempo. A partir de uma análise, mesmo que marginal, de parte do conjunto substancial de seus escritos, palestras, entrevistas e debates, sobretudo da obra em conjunto com Horkheimer, “Dialética do Esclarecimento” e dos ensaios de “Educação e Emancipação”, este texto evidencia os pressupostos do pensamento adorniano, pautado na teoria crítica da sociedade, e elucida suas reflexões na tentativa de propor que a educação fosse mais política e baseada no esclarecimento e na emancipação. Modicamente, buscamos pensar a atualidade e a urgência de suas reflexões para o campo educacional contemporâneo.
Datenschutz versus Katastrophenschutz : Standortdaten als Mittel zur Bekämpfung der Corona-Pandemie
(2020)
Einige Länder setzen Standortdaten jetzt schon gezielt ein, um die weitere Ausbreitung von Covid-19 einzudämmen. Ein Gesetzentwurf von Bundesgesundheitsminister Jens Spahn, der weitreichende Befugnisse vorsah, um mithilfe von Standortdaten Kontaktpersonen von Infizierten über deren Handys zu orten, stieß auf teilweise heftige Kritik. Der Gesetzentwurf wurde daraufhin zurückgezogen, ohne dass nähere Einzelheiten an die Öffentlichkeit gelangt sind. Ein genauer Blick zeigt jedoch, dass eine Verarbeitung von Standortgesundheitsdaten nicht nur tatsächlich nützlich sein kann, sondern auch rechtlich möglich ist.
We investigate the impact of reporting regulation on corporate innovation. Exploiting thresholds in Europe’s regulation and a major enforcement reform in Germany, we find that forcing firms to publicly disclose their financial statements discourages innovative activities. Our evidence suggests that reporting regulation has significant real effects by imposing proprietary costs on innovative firms, which in turn diminish their incentives to innovate. At the industry level, positive information spillovers (e.g., to competitors, suppliers, and customers) appear insufficient to compensate the negative direct effect on the prevalence of innovative activity. The spillovers instead appear to concentrate innovation among a few large firms in a given industry. Thus, financial reporting regulation has important aggregate and distributional effects on corporate innovation.
Th. W. Adorno’s aesthetics represents a comprehensive reflection on a number of important topics in aesthetic research. Among them is the issue of the aesthetic experience generated by the beauty of nature. In the perspective of Adorno’s theory, the experience of natural beauty is described as a quality that forms in an immanent relation to the historical and social reality of humans. In the first place, one can observe the fundamental dependence of natural beauty on the degree of social domination of nature. By failing to reflect on this social mediation, the experience of natural beauty appears to be immediate and creates the deceptive fantasy of the primordial form of nature. At the same time, however, Adorno uncovers a positive potential in the experience of natural beauty – it lies in the ability to transcend a power-based subjectivity that reduces reality to the substrate of the domination. By means of the transcendence of subjectivity, the experience of natural beauty opens up the possibility to perceive and approach reality in the unreduced fullness of its qualities while also anticipating a reconciliation of man with nature in an allegorical way. The aim of my study is to describe the sketched aspects of the experience of natural beauty.
Brilmayer, Robert ; Brodrecht, Martin ; Kaiser, Christoph ; Breitzke, Hergen ; Kumari, Bharti ; Wachtveitl, Josef ; Buntkowsky, Gerd ; Andrieu‐Brunsen, Annette
A novel thiazol‐based ratiometric dye for the detection of local pH values is synthesized, and its properties are characterized by a combination of optical spectroscopy, solid‐state NMR and DNP (dynamic nuclear polarization)‐enhanced solid‐state NMR. This novel dye covers a completely different sensitivity range with its acidic pKa value of 3.5 compared to other established dyes for ratiometric pH detection, such as SNARF. The dye is grafted to the surfaces of mesoporous silica materials, which enables, for the first time, direct in situ measurements of the local pH values in silica mesopores by a simple UV‐vis spectroscopy method. The obtained results, which are in good agreement with previous indirect techniques, indicate a background electrolyte‐dependent pKa shift of at least one pH unit under nanoconfined conditions compared to the pKa of the dye in bulk solution.
Broft, Patrizia ; Dzatko, Simon ; Krafcikova, Michaela ; Wacker, Anna ; Hänsel-Hertsch, Robert ; Dötsch, Volker ; Trantirek, Lukáš ; Schwalbe, Harald
We report here the in-cell NMR-spectroscopic observation of the binding of the cognate ligand 2′-deoxyguanosine to the aptamer domain of the bacterial 2′-deoxyguanosine-sensing riboswitch in eukaryotic cells, namely Xenopus laevis oocytes and in human HeLa cells. The riboswitch is sufficiently stable in both cell types to allow for detection of binding of the ligand to the riboswitch. Most importantly, we show that the binding mode established by in vitro characterization of this prokaryotic riboswitch is maintained in eukaryotic cellular environment. Our data also bring important methodological insights: Thus far, in-cell NMR studies on RNA in mammalian cells have been limited to investigations of short (<15 nt) RNA fragments that were extensively modified by protecting groups to limit their degradation in the intracellular space. Here, we show that the in-cell NMR setup can be adjusted for characterization of much larger (≈70 nt) functional and chemically non-modified RNA.
Verletzungen der Fingerkuppen stellen einen häufigen Grund für die Vorstellung in der Notaufnahme dar. Während viele Verletzungen konservativ behandelt werden können, benötigen einige Patienten eine operative Versorgung. Dabei kommen verschiedene operative Verfahren zur Anwendung, darunter eine Fingerkuppenrekonstruktion mit einer neurovaskulären Insel-Lappenplastik.
Ziel der neurovaskulären Insel-Lappenplastik ist die Wiederherstellung einer taktil sensiblen und wieder belastungsfähigen Fingerkuppe ohne ein Längendefizit des Fingers.
In der vorliegenden Studie wurden Langzeit-Behandlungsergebnisse mit einer mittleren Nachuntersuchungsdauer von 105 Monaten bei 28 Patienten mit 29 durch neurovaskuläre Insel-Lappenplastiken rekonstruierten Fingerkuppen in der Berufsgenossenschaftlichen Unfallklinik Frankfurt am Main erfasst. Die untersuchten Patienten hatten zum Zeitpunkt der Verletzung ein Durchschnittsalter von 38,4 Jahren. Es handelte sich überwiegend um männliche und berufstätige Patienten.
Es wurden nur Fingerkuppenverletzungen mit freiliegenden Knochen (Allen-Klassifikation Zone III und IV) operativ versorgt. In unserer Studie traten am häufigsten die Verletzungen am Mittelfinger, Zeigefinger und Ringfinger auf. Die Mehrheit der Fingerkuppenverletzungen geschah in Folge eines Arbeitsunfalls, die Arbeitsunfähigkeitsdauer betrug ca. 6,1 Wochen. Die maximale Größe eines neurovaskulären Insel-Lappen lag bei 6 x 3,5 cm.
Alle Patienten waren mit den Behandlungsergebnissen anhand der numerischen Rating-Skala und des DASH Fragebogens bezüglich Funktionalität sowie dem ästhetischen Outcome zufrieden und würden sich wieder operieren lassen.
Die Sensibilität konnte anhand der Zwei-Punkte-Diskrimination sowie Semmes-Weinstein Monofilament-Testes als gut bewertet werden und normale physiologische Werte erreichen. Die Narbe war überwiegend weich und in der Mehrheit der Fälle entsprach sie anhand der Vancouver Scar Scale Werte annähend der normalen Haut. Zwei Drittel der Patienten gaben keine Schmerzen in Ruhe an. Die Hälfte der Patienten gaben Schmerzen unter Belastung anhand der numerischen Rating-Scala an.
Trotz der hohen Anzahl von Krallennagelbildungen in 56,5 % und einer Differenz der Nagellänge bzw. Form waren alle Patienten mit dem Erhalt des Nagels zufrieden und haben dies subjektiv nicht als störend empfunden.
Als besonders beeinträchtigend wurde eine Kälteempfindlichkeit von 48,3 % Patienten beschrieben.
Der Mittelwert der Fingerkraft im Schlüsselgriff mit Hilfe des Pinch-Gauge zwischen Daumen und den vier Fingerspitzen im Wechsel wurde bei fast allen Messungen an den gesunden Fingern gering größer gemessen ohne eine statistisch signifikante Differenz. Die Messung der Handkraft mittels Jamar-Dynamometer ergab ein Defizit von 8,8 % (Vergleich betroffene zur gesunden Hand).
Bei drei von 24 Patienten hat sich eine Beugekontraktur im Interphalangealgelenk von 5°, 15°, 20° und bei einem von 22 Patienten im distalen Interphalangealgelenk von 10° gebildet. Zum Nachuntersuchungszeitpunkt wurden durch die Untersucherin ein Hoffmann-Tinel- Zeichen in 24,1 % und Druckschmerz in 17,2 % im Bereich der verletzten Fingerkuppe festgestellt. Subjektiv empfand kein Patient diese Symptome als störend und alle berufstätigen Patienten konnten ihre vor dem Unfall ausgeübte Tätigkeit wieder aufnehmen. Diese Studie konnte belegen, dass die Defektdeckung der Fingerkuppenverletzungen mit Hilfe von neurovaskulären Insel-Lappenplastiken ein sehr gutes ästhetisches und funktionelles Ergebnis mit einer fast identischen Hautqualität erzielt. Mit dieser Methode konnte eine Wiederherstellung des Weichteilgewebes der sensiblen Fingerkuppe auch bei großflächigen Defekten der Fingerkuppe erreicht werden. Die subjektive Patientenzufriedenheit mit dieser Rekonstruktionsmethode ist hoch.
Voting advice applications (VAAs) are online tools providing voting advice to their users. This voting advice is based on the match between the answers of the user and the answers of several political parties to a common questionnaire on political attitudes. To visualize this match, VAAs use a wide array of visualisations, most popular of which are the two-dimensional political maps. These maps show the position of both the political parties and the user in the political landscape, allowing the user to understand both their own position and their relation to the political parties. To construct these maps, VAAs require scales that represent the main underlying dimensions of the political space. This makes the correct construction of these scales important if the VAA aims to provide accurate and helpful voting advice. This paper presents three criteria that assess if a VAA achieves this aim. To illustrate their usefulness, these three criteria—unidimensionality, reliability and quality—are used to assess the scales in the cross-national EUVox VAA, a VAA designed for the European Parliament elections of 2014. Using techniques from Mokken scaling analysis and categorical principal component analysis to capture the metrics, I find that most scales show low unidimensionality and reliability. Moreover, even while designers can—and sometimes do—use certain techniques to improve their scales, these improvements are rarely enough to overcome all of the problems regarding unidimensionality, reliability and quality. This leaves certain problems for the designers of VAAs and designers of similar type online surveys.
The quantified behavioral test - a confirmatory test in the diagnostic process of adult ADHD?
(2020)
Brunkhorst-Kanaan, Nathalie ; Verdenhalven, Moritz ; Kittel-Schneider, Sarah ; Vainieri, Isabella ; Reif, Andreas ; Grimm, Oliver
The differential diagnosis of attention deficit hyperactivity disorder (ADHD) in adulthood is complicated by comorbid disorders, but also by the overlapping of main symptoms such as inattentiveness, impulsivity, and hyperactivity with other disorders. Neuropsychological tests like continuous performance tests (CPT) try to solve this dilemma by objectively measurable parameters. We investigated in a cohort of n=114 patients presenting to an ADHD outpatient clinic how well a commercially available CPT test (QbTest®) can differentiate between patients with ADHD (n=94) and patients with a disconfirmed ADHD diagnosis (n=20). Both groups showed numerous comorbidities, predominantly depression (27.2% in the ADHD group vs. 45% in the non-ADHD group) and substance-use disorders (18.1% vs. 10%, respectively). Patients with ADHD showed significant higher activity (2.07 ± 1.23) than patients without ADHD (1.34 ± 1.27, dF=112; p=0.019), whereas for the other core parameters, inattention and impulsivity no differences could be found. Reaction time variability has been discussed as a typical marker for inattention in ADHD. Therefore, we investigated how well ex-Gaussian analysis of response time can differentiate between ADHD and other patients, showing, that it does not help to identify patients with ADHD. Even though patients with ADHD showed significantly higher activity, this parameter differed only poorly between patients (accuracy AUC 65% of an ROC-Curve). We conclude that CPTs do not help to identify patients with ADHD in a specialized outpatient clinic. The usability of this test for differentiating between ADHD and other psychiatric disorders is poor and a sophisticated analysis of reaction time did not decisively increase the test accuracy.
Brunst, Steffen ; Kramer, Jan S. ; Kilu, Whitney ; Heering, Jan Peter ; Pollinger, Julius Carl ; Hiesinger, Kerstin ; George, Sven ; Steinhilber, Dieter ; Merk, Daniel ; Proschak, Ewgenij
Designed multitarget ligands are a popular approach to generating efficient and safe drugs, and fragment-based strategies have been postulated as a versatile avenue to discover multitarget ligand leads. To systematically probe the potential of fragment-based multiple ligand discovery, we have employed a large fragment library for comprehensive screening on five targets chosen from proteins for which multitarget ligands have been successfully developed previously (soluble epoxide hydrolase, leukotriene A4 hydrolase, 5-lipoxygenase, retinoid X receptor, farnesoid X receptor). Differential scanning fluorimetry served as primary screening method before fragments hitting at least two targets were validated in orthogonal assays. Thereby, we obtained valuable fragment leads with dual-target engagement for six out of ten target combinations. Our results demonstrate the applicability of fragment-based approaches to identify starting points for polypharmacological compound development with certain limitations.
Consuming dividends
(2020)
This paper studies why investors buy dividend-paying assets and how they time their consumption accordingly. We combine administrative bank data linking customers’ consumption transactions and income to detailed portfolio data and survey responses on financial behavior. We find that private consumption is excessively sensitive to dividend income. Investors across wealth, income, and age distributions increase spending precisely around days of dividend receipt. Importantly, the consumption response is driven by financially prudent investors who select dividend portfolios, anticipate dividend income, and plan consumption accordingly. Our results contribute to the literature on a dividend clientele and provide evidence of ‘planned’ excess sensitivity.
Bräunlich, Katharina ; Dienlin, Tobias ; Eichenhofer, Johannes ; Helm, Paula ; Trepte, Sabine ; Grimm, Rüdiger ; Seubert, Sandra ; Gusy, Christoph
In the recent decades, privacy scholarship has made significant progress. Most of it was achieved in monodisciplinary works. However, privacy has a deeply interdisciplinary nature. Most importantly, societies as well as individuals experience privacy as being influenced by legal, technical, and social norms and structures. In this article, we hence attempt to connect insights of different academic disciplines into a joint model, an Interdisciplinary Privacy and Communication Model. The model differentiates four different elements: communication context, protection needs, threat and risk analysis, as well as protection enforcement. On the one hand, with this model, we aim to describe how privacy unfolds. On the other hand, the model also prescribes how privacy can be furnished and regulated. As such, the model contributes to a general understanding of privacy as a theoretical guide and offers a practical basis to address new challenges of the digital age.
Polyacrylamide gel electrophoresis (PAGE) and immunoblotting (Western blotting) are the most common methods in life science. In conjunction with these methods, the polyhistidine-tag has proven to be a superb fusion tag for protein purification as well as specific protein detection by immunoblotting, which led to a vast amount of commercially available antibodies. Nevertheless, antibody batch-to-batch variations and nonspecific binding complicate the laborious procedure. The interaction principle applied for His-tagged protein purification by metal-affinity chromatography using N-nitrilotriacetic acid (NTA) was employed to develop small high-affinity lock-and-key molecules coupled to a fluorophore. These multivalent NTA probes allow specific detection of His-tagged proteins by fluorescence. Here, we report on HisQuick-PAGE as a fast and versatile immunoblot alternative, using such high-affinity fluorescent super-chelator probes. The procedure allows direct, fast, and ultra-sensitive in-gel detection and analysis of soluble proteins as well as intact membrane protein complexes and macromolecular ribonucleoprotein particles.
Brückle, Maria-Sophie ; Thomas, Elizabeth T. ; Seide, Svenja ; Pilz, Maximilian ; González-González, Ana I. ; Nguyen, Truc Sophia ; Harder, Sebastian ; Glasziou, Paul ; Gerlach, Ferdinand M. ; Muth, Christiane
Background: Unwanted anticholinergic effects are both underestimated and frequently overlooked. Failure to identify adverse drug reactions (ADRs) can lead to prescribing cascades and the unnecessary use of over-thecounter products. The objective of this systematic review and meta-analysis is to explore and quantify the frequency and severity of ADRs associated with amitriptyline vs. placebo in randomized controlled trials (RCTs) involving adults with any indication, as well as healthy individuals. Methods: A systematic search in six electronic databases, forward/backward searches, manual searches, and searches for Food and Drug Administration (FDA) and European Medicines Agency (EMA) approval studies, will be performed. Placebo-controlled RCTs evaluating amitriptyline in any dosage, regardless of indication and without restrictions on the time and language of publication, will be included, as will healthy individuals. Studies of topical amitriptyline, combination therapies, or including <100 participants, will be excluded. Two investigators will screen the studies independently, assess methodological quality, and extract data on design, population, intervention, and outcomes ((non-)anticholinergic ADRs, e.g., symptoms, test results, and adverse drug events (ADEs) such as falls). The primary outcome will be the frequency of anticholinergic ADRs as a binary outcome (absolute number of patients with/without anticholinergic ADRs) in amitriptyline vs. placebo groups. Anticholinergic ADRs will be defined by an experienced clinical pharmacologist, based on literature and data from Martindale: The Complete Drug Reference. Secondary outcomes will be frequency and severity of (non-)anticholinergic ADRs and ADEs. The information will be synthesized in meta-analyses and narratives. We intend to assess heterogeneity using metaregression (for indication, outcome, and time points) and I2 statistics. Binary outcomes will be expressed as odds ratios, and continuous outcomes as standardized mean differences. Effect measures will be provided using 95% confidence intervals. We plan sensitivity analyses to assess methodological quality, outcome reporting etc., and subgroup analyses on age, dosage, and duration of treatment. Discussion: We will quantify the frequency of anticholinergic and other ADRs/ADEs in adults taking amitriptyline for any indication by comparing rates for amitriptyline vs. placebo, hence, preventing bias from disease symptoms and nocebo effects. As no standardized instrument exists to measure it, our overall estimate of anticholinergic ADRs may have limitations.
Learning to solve graph tasks is one of the key prerequisites of acquiring domain-specific knowledge in most study domains. Analyses of graph understanding often use eye-tracking and focus on analyzing how much time students spend gazing at particular areas of a graph—Areas of Interest (AOIs). To gain a deeper insight into students’ task-solving process, we argue that the gaze shifts between students’ fixations on different AOIs (so-termed transitions) also need to be included in holistic analyses of graph understanding that consider the importance of transitions for the task-solving process. Thus, we introduced Epistemic Network Analysis (ENA) as a novel approach to analyze eye-tracking data of 23 university students who solved eight multiple-choice graph tasks in physics and economics. ENA is a method for quantifying, visualizing, and interpreting network data allowing a weighted analysis of the gaze patterns of both correct and incorrect graph task solvers considering the interrelations between fixations and transitions. After an analysis of the differences in the number of fixations and the number of single transitions between correct and incorrect solvers, we conducted an ENA for each task. We demonstrate that an isolated analysis of fixations and transitions provides only a limited insight into graph solving behavior. In contrast, ENA identifies differences between the gaze patterns of students who solved the graph tasks correctly and incorrectly across the multiple graph tasks. For instance, incorrect solvers shifted their gaze from the graph to the x-axis and from the question to the graph comparatively more often than correct solvers. The results indicate that incorrect solvers often have problems transferring textual information into graphical information and rely more on partly irrelevant parts of a graph. Finally, we discuss how the findings can be used to design experimental studies and for innovative instructional procedures in higher education