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BIOfid is a specialized information service currently being developed to mobilize biodiversity data dormant in printed historical and modern literature and to offer a platform for open access journals on the science of biodiversity. Our team of librarians, computer scientists and biologists produce high-quality text digitizations, develop new text-mining tools and generate detailed ontologies enabling semantic text analysis and semantic search by means of user-specific queries. In a pilot project we focus on German publications on the distribution and ecology of vascular plants, birds, moths and butterflies extending back to the Linnaeus period about 250 years ago. The three organism groups have been selected according to current demands of the relevant research community in Germany. The text corpus defined for this purpose comprises over 400 volumes with more than 100,000 pages to be digitized and will be complemented by journals from other digitization projects, copyright-free and project-related literature. With TextImager (Natural Language Processing & Text Visualization) and TextAnnotator (Discourse Semantic Annotation) we have already extended and launched tools that focus on the text-analytical section of our project. Furthermore, taxonomic and anatomical ontologies elaborated by us for the taxa prioritized by the project’s target group - German institutions and scientists active in biodiversity research - are constantly improved and expanded to maximize scientific data output. Our poster describes the general workflow of our project ranging from literature acquisition via software development, to data availability on the BIOfid web portal (http://biofid.de/), and the implementation into existing platforms which serve to promote global accessibility of biodiversity data.
Thirty-seven alien plant species, pre-identified by horizon scanning exercises were prioritised for pest risk analysis (PRA) using a modified version of the EPPO Prioritisation Process designed to be compliant with the EU Regulation 1143/2014. In Stage 1, species were categorised into one of four lists – a Residual List, EU List of Minor Concern, EU Observation List and the EU List of Invasive Alien Plants. Only those species included in the latter proceeded to the risk management stage where their priority for PRA was assessed. Due to medium or high spread potential coupled with high impacts twenty-two species were included in the EU List of Invasive Alien Plants and proceeded to Stage 2. Four species (Ambrosia trifida, Egeria densa, Fallopia baldschuanica and Oxalis pes-caprae) were assigned to the EU Observation List due to moderate or low impacts. Albizia lebbeck, Clematis terniflora, Euonymus japonicus, Lonicera morrowii, Prunus campanulata and Rubus rosifolius were assigned to the residual list due to a current lack of information on impacts. Similarly, Cornus sericea and Hydrilla verticillata were assigned to the Residual List due to unclear taxonomy and uncertainty in native status, respectively. Chromolaena odorata, Cryptostegia grandiflora and Sphagneticola trilobata were assigned to the Residual List as it is unlikely they will establish in the Union under current climatic conditions. In the risk management stage, Euonymus fortunei, Ligustrum sinense and Lonicera maackii were considered a low priority for PRA as they do not exhibit invasive tendencies despite being widely cultivated in the EU over several decades. Nineteen species were identified as having a high priority for a PRA (Acacia dealbata, Ambrosia confertiflora, Andropogon virginicus, Cardiospermum grandiflorum, Celastrus orbiculatus, Cinnamomum camphora, Cortaderia jubata, Ehrharta calycina, Gymnocoronis spilanthoides, Hakea sericea, Humulus scandens, Hygrophila polysperma, Lespedeza cuneata, Lygodium japonicum, Pennisetum setaceum, Prosopis juliflora, Sapium sebiferum, Pistia stratiotes and Salvinia molesta).
Nature affects human well-being in multiple ways. However, the association between species diversity and human well-being at larger spatial scales remains largely unexplored. Here, we examine the relationship between species diversity and human well-being at the continental scale, while controlling for other known drivers of well-being. We related socio-economic data from more than 26,000 European citizens across 26 countries with macroecological data on species diversity and nature characteristics for Europe. Human well-being was measured as self-reported life-satisfaction and species diversity as the species richness of several taxonomic groups (e.g. birds, mammals and trees). Our results show that bird species richness is positively associated with life-satisfaction across Europe. We found a relatively strong relationship, indicating that the effect of bird species richness on life-satisfaction may be of similar magnitude to that of income. We discuss two, non-exclusive pathways for this relationship: the direct multisensory experience of birds, and beneficial landscape properties which promote both bird diversity and people's well-being. Based on these results, this study argues that management actions for the protection of birds and the landscapes that support them would benefit humans. We suggest that political and societal decision-making should consider the critical role of species diversity for human well-being.
Background: The systematic analysis of a large number of comparable plant trait data can support investigations into phylogenetics and ecological adaptation, with broad applications in evolutionary biology, agriculture, conservation, and the functioning of ecosystems. Floras, i.e., books collecting the information on all known plant species found within a region, are a potentially rich source of such plant trait data. Floras describe plant traits with a focus on morphology and other traits relevant for species identification in addition to other characteristics of plant species, such as ecological affinities, distribution, economic value, health applications, traditional uses, and so on. However, a key limitation in systematically analyzing information in Floras is the lack of a standardized vocabulary for the described traits as well as the difficulties in extracting structured information from free text.
Results: We have developed the Flora Phenotype Ontology (FLOPO), an ontology for describing traits of plant species found in Floras. We used the Plant Ontology (PO) and the Phenotype And Trait Ontology (PATO) to extract entity-quality relationships from digitized taxon descriptions in Floras, and used a formal ontological approach based on phenotype description patterns and automated reasoning to generate the FLOPO. The resulting ontology consists of 25,407 classes and is based on the PO and PATO. The classified ontology closely follows the structure of Plant Ontology in that the primary axis of classification is the observed plant anatomical structure, and more specific traits are then classified based on parthood and subclass relations between anatomical structures as well as subclass relations between phenotypic qualities.
Conclusions: The FLOPO is primarily intended as a framework based on which plant traits can be integrated computationally across all species and higher taxa of flowering plants. Importantly, it is not intended to replace established vocabularies or ontologies, but rather serve as an overarching framework based on which different application- and domain-specific ontologies, thesauri and vocabularies of phenotypes observed in flowering plants can be integrated.
To understand the rapid rate of change in global biodiversity, it is necessary to analyse the present condition of ecosystems and to elucidate relationships of species to their environment. The BIOKLIM Project (Biodiversity and Climate Change Project) is intended to close this gap in our knowledge of montane and high montane forests of Central European low mountain ranges, one of the most threatened mixed montane systems worldwide. The Bavarian Forest National Park is characterised by its altitude range of ca. 800 m and a strongly developed gradient of forest structure. Relicts of old growth forests (areas of former local nature reserves) and dead stands, mostly killed by bark beetles, are accompanied by widely varying levels of woody debris and light. The gradients comprise a wide range of abiotic and forest structure factors, making the study area well suited for a multidisciplinary investigation of biodiversity. Unconstrained ordination (CA) of six taxa (vascular plants, wood inhabiting fungi, birds, carabids, spiders and molluscs) indicate the altitudinal gradient to be the main driver for distribution patterns of species assemblages. Objectives, structure, study design and data sampling of the BIOKLIM Project are described in detail. We set up 293 sampling plots along four main straight transects following the altitudinal gradient. All abiotic and stand structure data regarded as relevant are available for each plot. Vascular plants, wood inhabiting fungi and birds were sampled or mapped on all 293 plots. For the other 22 investigated taxa we used subsamples pre-stratified according to the sampling methods. The necessity of dealing with spatial autocorrelation, arising from sampling along linear transects, is described. Finally, study approach of our biodiversity project is compared with others involving altitudinal gradients. Worldwide, only a few multidisciplinary biodiversity studies have been previously conducted on long altitudinal gradients. However, in most cases sampling techniques were similar to ours, which allows comparison of results between continents. Keywords: Climate Change, Biodiversity, species-environment relationships
The large number of species still to be discovered in fungi, together with an exponentially growing number of environmental sequences that cannot be linked to known taxa, has fuelled the idea that it might be necessary to formally name fungi on the basis of sequence data only. Here we object to this idea due to several shortcomings of the approach, ranging from concerns regarding reproducibility and the violation of general scientific principles to ethical issues. We come to the conclusion that sequence-based nomenclature is potentially harmful for mycology as a discipline. Additionally, a classification based on sequences as types is not within reach anytime soon, because there is a lack of consensus regarding common standards due to the fast pace at which sequencing technologies develop.
Nature benefits human health. To date, however, little is known whether biodiversity relates to human health. While some local and city level studies show that species diversity, as a measure of biodiversity, can have positive effects, there is a lack of studies about the relationship between different species diversity measures and human health, especially at larger spatial scales. Here, we conduct cross-sectional analyses of the association between species diversity and human health across Germany, while controlling for socio-economic factors and other nature characteristics. As indicators for human health, we use the mental (MCS) and physical health (PCS) component scales of the German Socio-Economic Panel (SOEP, Short Form Health Questionnaire – SF12). For species diversity, we use species richness and abundance estimates of two species groups: plants and birds. We phrase the following hypotheses: plant and bird species are positively associated with mental and physical health (H1 & H3); bird abundance is positively related to mental health (H2). Our results demonstrate a significant positive relationship between plant and bird species richness and mental health across all model variations controlling for a multitude of other factors. These results highlight the importance for species diversity for people’s mental health and well-being. Therefore, policy makers, landscape planners and greenspace managers on the local and national level should consider supporting biodiverse environments to promote mental health and wellbeing. For this purpose, we propose to use species diversity measures as indicators for salutogenic (health promoting) characteristics of nature, landscape and urban green space.
Despite islands contributing only 6.7% of land surface area, they harbor ~20% of the Earth's biodiversity, but unfortunately also ~50% of the threatened species and 75% of the known extinctions since the European expansion around the globe. Due to their geological and geographic history and characteristics, islands act simultaneously as cradles of evolutionary diversity and museums of formerly widespread lineages—elements that permit islands to achieve an outstanding endemicity. Nevertheless, the majority of these endemic species are inherently vulnerable due to genetic and demographic factors linked with the way islands are colonized. Here, we stress the great variation of islands in their physical geography (area, isolation, altitude, latitude) and history (age, human colonization, human density). We provide examples of some of the most species rich and iconic insular radiations. Next, we analyze the natural vulnerability of the insular biota, linked to genetic and demographic factors as a result of founder events as well as the typically small population sizes of many island species. We note that, whereas evolution toward island syndromes (including size shifts, derived insular woodiness, altered dispersal ability, loss of defense traits, reduction in clutch size) might have improved the ability of species to thrive under natural conditions on islands, it has simultaneously made island biota disproportionately vulnerable to anthropogenic pressures such as habitat loss, overexploitation, invasive species, and climate change. This has led to the documented extinction of at least 800 insular species in the past 500 years, in addition to the many that had already gone extinct following the arrival of first human colonists on islands in prehistoric times. Finally, we summarize current scientific knowledge on the ongoing biodiversity loss on islands worldwide and express our serious concern that the current trajectory will continue to decimate the unique and irreplaceable natural heritage of the world's islands. We conclude that drastic actions are urgently needed to bend the curve of the alarming rates of island biodiversity loss.
Revision of the genus Cerapanorpa (Mecoptera: Panorpidae) with descriptions of four new species
(2019)
The genus Cerapanorpa Gao, Ma & Hua, 2016 is taxonomically revised. Cerapanorpa is confirmed to be endemic to the mountain regions in central China. Nineteen species are recognized in the genus, including four new species: Cerapanorpa baimaensis sp. nov., Cerapanorpa xuebaodinga sp. nov., and Cerapanorpa yanggashana sp. nov. from the Minshan Mountains, and Cerapanorpa taizishana sp. nov. from the northeastern margin of the Qinghai-Tibetan Plateau. Six species are transferred from Cerapanorpa back to Panorpa Linnaeus, 1758. An updated key to species is presented.
Umborotula bogorensis (Weber, 1890) is a freshwater sponge species that is recorded occasionally, mainly on islands and peninsulas of Australasia. Less than 10 records with morphological descriptions and illustrations have been published so far, and the most recent record is dated 1978. A list of the few voucher specimens from museum collections is provided here together with the rich unpublished Sasaki collection from Japan, Korea, and Taiwan, recently deposited in a Japanese museum. The present new record from Northeast Thailand enlarges the geographic range of U. bogorensis to the Indochina mainland. A comparison of historical data vs present Thai records is performed by morpho-analysis(SEM) as well as biogeographic, ecological and climatic data. Results show low variability in shape and size of the diagnostic morphotraits in populations scattered over the wide geographic range. Here we also formally accept the new taxonomic status (rank elevation) of the previous suborder Spongillina as a new order Spongillida. The presence of this potentially threatened species in the Sakaerat Biosphere Reserve, together with its possible long-term persistence in the Bogor Botanical Garden, may support its conservation. Only a census of the known, extremely scattered populations will define the status of this species.
Insect taxonomy is fundamental to global biodiversity research, but few studies have been conducted to track progress in this field using objective criteria. This study reports publishing trends in the taxonomy of four diverse, globally-distributed insect families from 1946 to 2012 to elucidate recent progress and the current status of insect taxonomy. Publications included in the Zoological Record online literature database were analyzed for Cicadellidae (leafhoppers), Miridae (plant bugs), Pyralidae (moths) and Staphylinidae (rove beetles). Data on numbers of new species, article length, species description length, authorship and collaborations, and taxonomic journals were extracted and compiled for each year. The results showed that (1) the number of taxonomic papers increased before 1980, followed by a steep decline with subsequent partial recovery; (2) the number of papers describing new species generally mirrored the trend in numbers of new species, suggesting no overall change in the proportion of larger, synthetic works (monographs) and more such work is encouraged; (3) the average number of new species described per publication decreased over the time period investigated, but with an increase in the average description pages per new species; (4) researchers from Europe and North America continue to produce the most taxonomic research on three of the four families, but the main center for Cicadellidae taxonomy has recently shifted to Asia; (5) collaboration among authors within and across continents has increased as indicated by increases in coauthored papers; and (6) journal prevalence differed for the four families and the top 10 most utilized journals for each family were given out for reference. Based on the analysis of the publication trend of the four families, we found that the overall trend toward increasing rates of species discovery is encouraging. But more human resources training and financial support on taxonomic work are required in order to complete a global faunistic inventory in a reasonable timeframe. Future study that conducts more in-depth and comprehensive analysis based on more families is required to reflect the overall trend of the insect taxonomy.
The recent recolonisation of the Central European lowland (CEL) by the grey wolf (Canis lupus) provides an excellent opportunity to study the effect of founder events on endoparasite diversity. Which role do prey and predator populations play in the re-establishment of endoparasite life cycles? Which intrinsic and extrinsic factors control individual endoparasite diversity in an expanding host population? In 53 individually known CEL wolves sampled in Germany, we revealed a community of four cestode, eight nematode, one trematode and 12 potential Sarcocystis species through molecular genetic techniques. Infections with zoonotic Echinococcus multilocularis, Trichinella britovi and T. spiralis occurred as single cases. Per capita endoparasite species richness and diversity significantly increased with population size and changed with age, whereas sex, microsatellite heterozygosity, and geographic origin had no effect. Tapeworm abundance (Taenia spp.) was significantly higher in immigrants than natives. Metacestode prevalence was slightly higher in ungulates from wolf territories than from control areas elsewhere. Even though alternative canid definitive hosts might also play a role within the investigated parasite life cycles, our findings indicate that (1) immigrated wolves increase parasite diversity in German packs, and (2) prevalence of wolf-associated parasites had declined during wolf absence and has now risen during recolonisation.
Biodiversity is a cornerstone of human health and well-being. However, while evidence of the contributions of nature to human health is rapidly building, research into how biodiversity relates to human health remains limited in important respects. In particular, a better mechanistic understanding of the range of pathways through which biodiversity can influence human health is needed. These pathways relate to both psychological and social processes as well as biophysical processes. Building on evidence from across the natural, social and health sciences, we present a conceptual framework organizing the pathways linking biodiversity to human health. Four domains of pathways—both beneficial as well as harmful—link biodiversity with human health: (i) reducing harm (e.g. provision of medicines, decreasing exposure to air and noise pollution); (ii) restoring capacities (e.g. attention restoration, stress reduction); (iii) building capacities (e.g. promoting physical activity, transcendent experiences); and (iv) causing harm (e.g. dangerous wildlife, zoonotic diseases, allergens). We discuss how to test components of the biodiversity-health framework with available analytical approaches and existing datasets. In a world with accelerating declines in biodiversity, profound land-use change, and an increase in non-communicable and zoonotic diseases globally, greater understanding of these pathways can reinforce biodiversity conservation as a strategy for the promotion of health for both people and nature. We conclude by identifying research avenues and recommendations for policy and practice to foster biodiversity-focused public health actions.
Nocturnal multi-species roosts of Cicindelidae (Coleoptera) in a Neotropical lowland rainforest
(2021)
Tiger beetles (Coleoptera: Cicindelidae) are frequent predators on the forest floor of the Amazon rainforest. We report on five diurnal sympatric tiger beetle species belonging to the genera Odontocheila Laporte de Castelnau and Poecilochila Rivalier in a terra firme rainforest in South Venezuela. We observed adult beetles for a full year and monitored their nocturnal roosts along two forest paths during the rainy season in 1998. We found up to four species communally roosting on low vegetation along the paths during the night. Multi-species roosts were more often observed than conspecific communal roosts. Although the individual composition of the nocturnal roosts changed frequently, distinct plants were used for several days to weeks. The most individual-rich roosts comprised 10 or 11 adult tiger beetles roosting on one leaf. Observed nocturnal roosts were dominated by O. angulipenis W. Horn and O. margineguttata (Dejean). Most mixed roosts included O. confusa (Dejean), O. angulipenis and O. margineguttata. Low abundances and size differences possibly facilitate the coexistence of these five tiger beetle species. The advantage of communal roosting during the rainy season is probably the reinforcement of their chemical defense.
Biodiversity information is contained in countless digitized and unprocessed scholarly texts. Although automated extraction of these data has been gaining momentum for years, there are still innumerable text sources that are poorly accessible and require a more advanced range of methods to extract relevant information. To improve the access to semantic biodiversity information, we have launched the BIOfid project (www.biofid.de) and have developed a portal to access the semantics of German language biodiversity texts, mainly from the 19th and 20th century. However, to make such a portal work, a couple of methods had to be developed or adapted first. In particular, text-technological information extraction methods were needed, which extract the required information from the texts. Such methods draw on machine learning techniques, which in turn are trained by learning data. To this end, among others, we gathered the BIOfid text corpus, which is a cooperatively built resource, developed by biologists, text technologists, and linguists. A special feature of BIOfid is its multiple annotation approach, which takes into account both general and biology-specific classifications, and by this means goes beyond previous, typically taxon- or ontology-driven proper name detection. We describe the design decisions and the genuine Annotation Hub Framework underlying the BIOfid annotations and present agreement results. The tools used to create the annotations are introduced, and the use of the data in the semantic portal is described. Finally, some general lessons, in particular with multiple annotation projects, are drawn.
Biodiversity loss poses a significant threat to the global economy and affects ecosystem services on which most large companies rely heavily. The severe financial implications of such a reduced species diversity have attracted the attention of companies and stakeholders, with numerous calls to increase corporate transparency. Using textual analysis, this study thus investigates the current state of voluntary biodiversity reporting of 359 European blue-chip companies and assesses the extent to which it aligns with the upcoming disclosure framework of the Task Force on Nature-related Financial Disclosures (TNFD). The descriptive results suggest a substantial gap between current reporting practices and the proposed TNFD framework, with disclosures largely lacking quantification, details and clear targets. In addition, the disclosures appear to be relatively unstandardized. Companies in sectors or regions exposed to higher nature-related risks as well as larger companies are more likely to report on aspects of biodiversity. This study contributes to the emerging literature on nature-related risks and provides detailed insights on the extent of the reporting gap in light of the upcoming standards.
This review study updates the Mediterranean fish species inventory (Agnatha, Gnathostoma). Comments upon regional particularities, endemicities, immigrations, emigrations and the recent movements of Mediterranean fauna are made. A comparafive analysis between the fish communities of the Mediterranean und those of neighbouring seas is sketched out.
Twenty-two samples of Leptoclinides Bjerkan, 1905 collected along the Brazilian coast between 1998 and 2017 were examined. Herein we describe two new species (Leptoclinides coronatus sp. nov. and Leptoclinides lotufoi sp. nov.). We also extend the distribution of L. latus F. Monniot, 1983 and report that, for the first time, L. torosus F. Monniot, 1983 was found outside its type locality.
The species-rich giant pill-millipedes (Sphaerotheriida) often represent a microendemic component of Madagascar’s mega-invertebrate fauna. Of the chirping genus Sphaeromimus de Saussure & Zehntner, 1902, ten species have been described. Here, we describe two new species of Sphaeromimus integratively, combining light microscopy, scanning electron microscopy, DNA barcoding and micro-CT technology for the first time in a taxonomic description of a giant pillmillipede. S. kalambatritra sp. nov. and S. midongy sp. nov. are the first giant pill-millipedes collected and described from the mountainous rainforests of Kalambatritra and Midongy. Both species show island gigantism compared to their congeners. Our analysis of the mitochondrial COI gene shows that the two species are related to one another with a moderate genetic distance (9.4%), while they are more closely related to an undetermined specimen from the forest of Vevembe (6.3% and 8.4%). They stand in a basal position with S. ivohibe Wesener, 2014 and S. musicus (de Saussure & Zehntner, 1897). The four aforementioned species share a high number of stridulation ribs on the male harp. Our micro-CT analysis provides a look into the head of S. kalambatritra sp. nov. and shows that non-destructive CT methods are a useful tool for studying the inner morphology of giant pill-millipedes.
Ein Ziel des modernen Waldbaus in Mitteleuropa ist die Förderung von Mischbeständen anstelle von Reinbeständen. Auf basenreichen Standorten sollen daher an Stelle von Buchen-Reinbeständen Mischbestände aus Buche (Fagus sylvatica) und Edellaubhölzern entwickelt werden. Diese Wälder zeichnen sich durch eine artenreiche und produktive Krautschicht aus, die an vielen Ökosystemfunktionen entscheidend beteiligt ist. Ob mit einer Zunahme der Baumarten-Diversität eine Veränderung der Krautschicht-Diversität verbunden ist und welche kausalen Mechanismen möglicherweise dafür verantwortlich sind, wurde daher an den naturnah bewirtschafteten Buchen-Edellaubholz-Mischbeständen im Göttinger Wald (Süd-Niedersachsen) untersucht. Auf 63 Untersuchungsflächen (je 400 m²) mit einem Gradienten von nur einer Baumart (nur Buche) mit bis zu fünf Baumarten in der Baumschicht wurde die Artenzusammensetzung, Diversität und Produktivität der Krautschicht bestimmt. Als Umweltfaktoren wurden der pH-Wert und die PAR-Transmissivität direkt gemessen, die Wasser- und Stickstoffversorgung über die Zeigerwerte nach Ellenberg indirekt eingeschätzt. In den Kalk-Buchenwäldern (H o r d e l y m o - F a g e t u m l a t h y r e t o s um) konnten keine signifikanten Zusammenhänge zwischen der Diversität der Baumschicht und der Diversität und Produktivität der Krautschicht festgestellt werden. Mit zunehmendem Lichtangebot erhöhte sich die Diversität der Krautschicht. Gleichzeitig korrelierte die oberirdische Biomasse der Krautschicht positiv mit dem Shannon-Index der Krautschicht. Mit zunehmendem Buchen-Anteil sank der pH-Wert im oberen Mineralboden, ohne dass dies Auswirkungen auf die Diversität und Produktivität der Krautschicht hatte. Auch die kleinräumigen Unterschiede im Lichtangebot und der Basenversorgung hatten keinen Einfluss auf die Krautschicht-Diversität. Einzelne Krautschichtarten zeigten Beziehungen zur Baumarten-Diversität und zu den Umweltfaktoren, allerdings waren diese meist nur schwach ausgeprägt. Die Untersuchungsergebnisse unterscheiden sich deutlich von Ergebnissen aus dem Nationalpark Hainich, wo in Laubwäldern ein enger Zusammenhang zwischen der Baumarten- und Krautschicht-Diversität nachgewiesen wurde. Mögliche Ursachen für diese gegensätzlichen Resultate können in der Methodik (Probeflächenauswahl), der Standorthomogenität (insbesondere die breitere Spanne in der Lössbedeckung und dem Tonanteil in den Böden des Hainichs), der Waldgeschichte und Bewirtschaftung sowie den beteiligten Mischbaumarten (insbesondere in der Rolle der Linde) liegen. Zusätzliche vergleichende und experimentelle Untersuchungen sind daher notwendig, um unser Wissen über die Zusammenhänge zwischen Diversität und Ökosystemfunktionen in Wäldern zu verbessern.
Since its founding in 1993 the International Long-term Ecological Research Network (ILTER) has gone through pronounced development phases. The current network comprises 44 active member LTER networks representing 700 LTER Sites and ~ 80 LTSER Platforms across all continents, active in the fields of ecosystem, critical zone and socio-ecological research. The critical challenges and most important achievements of the initial phase have now become state-of-the-art in networking for excellent science. At the same time increasing integration, accelerating technology, networking of resources and a strong pull for more socially relevant scientific information have been modifying the mission and goals of ILTER. This article provides a critical review of ILTER's mission, goals, development and impacts. Major characteristics, tools, services, partnerships and selected examples of relative strengths relevant for advancing ILTER are presented. We elaborate on the tradeoffs between the needs of the scientific community and stakeholder expectations. The embedding of ILTER in an increasingly collaborative landscape of global environmental observation and ecological research networks and infrastructures is also reflected by developments of pioneering regional and national LTER networks such as SAEON in South Africa, CERN/CEOBEX in China, TERN in Australia or eLTER RI in Europe. The primary role of ILTER is currently seen as a mechanism to investigate ecosystem structure, function, and services in response to a wide range of environmental forcings using long-term, place-based research. We suggest four main fields of activities and advancements for the next decade through development/delivery of a: (1) Global multi-disciplinary community of researchers and research institutes; (2) Strategic global framework and strong partnerships in ecosystem observation and research; (3) Global Research Infrastructure (GRI); and (4) a scientific knowledge factory for societally relevant information on sustainable use of natural resources.
The Southern Ocean (SO) is one of the most pristine regions of our Planet, characterised by high levels of biodiversity (5% of the global diversity) (David and Saucède 2015) and hosting a unique fauna (up to 90% of SO species are endemic) (De Broyer and Danis 2011; Chown et al. 2015). Yet, the knowledge on SO biodiversity is still far from being completed. In addition, the knowledge on the impact that changing environments have on SO species-richness is very little and for some groups, it is still totally unknown. For instance, most of studies generally focus on one single species such as Antarctic krill (Kawaguchi et al. 2011), Clio pyramidata Linnaeus, 1767 (Orr et al. 2005), Globigerina bulloides d'Orbigny, 1826 (Moy et al. 2009), or only on a high taxonomic level (e.g. phylum, class): Echinodermata, Crustacea, Mollusca, Porifera, Bryozoa, Brachiopoda, Hydrozoa, Ascidiacea, Holoturoidea
(Barnes 1999; Rowden et al. 2015; Post et al. 2017; Gutt et al. 2019; Vause et al. 2019; Pineda-Metz et al. 2020). Ultimately, the influence of sea-ice coverage on benthic species diversity was totally unknown prior to this study. In light of this, the objectives of the thesis are:
1. To expand the knowledge on shelf and deep-sea peracarid assemblage structure and abundance on a small regional (Weddell Sea) and on a large regional (Atlantic sector of the SO and South Atlantic Ocean) geographic scale.
2. To assess the environmental variables driving peracarid assemblage structure and abundance from the above mentioned areas.
3. To investigate SO benthic isopod species diversity from the Atlantic sector of the SO and assess the influence of environmental variables on their species-richness and composition.
4. To describe new possible peracarid species by means of integrative taxonomy, using morphological descriptions and whole genome sequencing analyses to support the species identification.
Objective outcomes: The present thesis provides new information on the abundance and assemblage structure based on 64766 peracarid crustaceans from different 28 locations within the Atlantic sector of the SO continental shelf and deep sea (Chapters I-II). These locations are characterised by different environmental conditions, for instance different sea-ice concentrations. Results from Chapters I-II confirmed the dominance of peracarid assemblages in the benthos, with amphipods being the most abundant group, followed by isopods. Sea ice was identified as the main driver shaping benthic peracarid assemblage structure (Chapter I). On a larger geographic scale and wider bathymetric range (e.g. including sampling locations from previous studies performed in the South Atlantic Ocean
and at a depth range from 160 to ~6000 m), depth was the main physical variable driving peracarid assemblage structure (Chapter III). In addition, 16157 isopod specimens from the Atlantic sector of the SO were identified to species level at a smaller scale (Chapter IV). In this case, sea ice was identified as the main physical driver affecting isopod diversity and composition among sampling locations (Chapter IV). Reduced concentration of sea ice
causes a decrease in isopod biodiversity, thus climate change was identified as a huge threat for this taxon and for SO benthos in general. During the identification process, two new isopod species were discovered (Chapter V). The two new species (Notopais sp.1 n. sp. and Notopais sp.2 n. sp.) were accurately described and identified by means of integrative taxonomy. This provided the first whole genome sequencing of benthic isopods from the SO and the first complete mitochondrial genome of the genus Notopais (Chapter V). Thanks to the collaboration with the University of Genoa (Dipartimento di Scienze della Terra dell'Ambiente e della Vita, DISTAV, Italy) and the National Antarctic Museum (MNA) in Genoa, two new SO species of the suborder Valvifera G. O. Sars, 1883 were described by means of classical taxonomy. In this case, a molecular approach could not be used because both new species were represented by a single specimen, therefore it was important to preserve the integrity of the holotypes (Chapters VI-VII).
India is among of the 12 mega biodiversity countries in the world. The huge area and the range of phyto-climatic conditions met within its eight bio-geographical zones contribute to the great diversity of the Indian flora. These bio-geographical zones have diverse topographical variations and climatic conditions. The present work deals with the bryo-diversity of western part of the country which is greatly neglected due to its comparatively harsh environmental conditions by the bryologists. It is an attempt to provide a comprehensive account of the bryophyte wealth of the region by stepwise exploration and it has initiated with Ranthambhore National Park.
In recent decades, biodiversity has declined significantly, threatening ecosystem services that are vital to society and the economy. Despite the growing recognition of biodiversity risks, the private sector response remains limited, leaving a significant financing gap. The paper therefore describes market-based solutions to bridge the financing gap, which can follow a risk assessment approach and an impact-oriented perspective. Key obstacles to mobilising private capital for biodiversity conservation are related to pricing biodiversity due to its local dimension, the lack of standardized metrics for valuation and still insufficient data reporting by companies hindering informed investment decisions. Financing biodiversity projects poses another challenge, mainly due to a mismatch between investor needs and available projects, for example in terms of project timeframes and their additionality.
Biotic interchange after the connection of previously independently evolving floras and faunas is thought to be one of the key factors that shaped global biodiversity as we see it today. However, it was not known how biotic interchange develops over longer time periods of several million years following the secondary contact of different biotas. Here we present a novel method to investigate the temporal dynamics of biotic interchange based on a phylogeographical meta-analysis by calculating the maximal number of observed dispersal events per million years given the temporal uncertainty of the underlying time-calibrated phylogenies. We show that biotic influx from mainland Asia onto the Indian subcontinent after Eocene continental collision was not a uniform process, but was subject to periods of acceleration, stagnancy and decrease. We discuss potential palaeoenvironmental causes for this fluctuation.
Se presenta una base de datos taxonómica y distribucional de los moluscos marinos, telTestres y dulceacuícolas de Chile continental e insular. Se ha descrito para Chile un total de 1.288 especies, incluidas en 236 familias. Estas especies representan alrededor del 1,8% de la fauna mundial conocida de moluscos recientes (en total unas 70.000 especies). Los gmpos más diversificados son Gastropoda (882 especies) y Bivalvia (233 especies). Del total, 1.070 son marinas, 132 terrestres y 83 de ambientes dulceacuiolas. Del total de especies, 13 son introducidas (terrestres: Milax gagates, Demceras laeve, D. reticulatum, Limax (Lehmannia) valentianus, L. (Limax)flavus, L. (L.) maximus, Oxychilus (Oxychilus) cellarius, O. (Ortizius) alliarius and Helix (Cryptomphalus) aspersa: marinas: Crassostrea gigas, Pecten mllximus, Haliotis rufescens y H. mimus) y 49 poseen importancia económica. Aun cuando las primeras referencias sobre moluscos chilenos datan de comienzos del siglo XVIII, se los conoce principalmente a través de los resultados de las expediciones oceanográficas de fines del siglo XIX y principios de éste.
We review the genus Cyclargus Nabokov (Lepidoptera: Lycaenidae) based on detailed comparative analyses of wing patterns, genitalia, and mitochondrial COI DNA barcode sequences, and suggest that Cyclargus is composed of four species: C. thomasi (Clench), C. woodruffi (W. Comstock and Huntington), C. ammon (Lucas), and C. dominica (Möschler). The following new subjective synonyms are proposed: C. erembis Nabokov syn. n. and C. kathleena K. Johnson and Matusik syn. n. are C. thomasi noeli (W. Comstock and Huntington); C. sorpresus K. Johnson and Matusik syn. n. and C. shuturn K. Johnson and Bálint syn. n. are C. ammon; and Cyclargus oualiri Brevignon syn. n. is C. woodruffi. Additionally, we report the discovery of C. thomasi noeli in Cuba (where this taxon was previously confused with C. ammon), report C. ammon from Hispaniola for the first time, and document the widespread sympatry of C. thomasi and C. ammon in the northern Caribbean (including south Florida, Cuba, Cayman Islands, Hispaniola, Lucayan Archipelago). Finally, we provide a provisional synonymic list of Cyclargus taxa, which may serve as a taxonomic framework to assist efforts to conserve the Miami blue (C. thomasi bethunebakeri (W. Comstock and Huntington)), a taxon listed as "Endangered" under the Endangered Species Act in the United States.
Mining is one of the major pollution sources worldwide, causing huge disturbances to the environment. Industrial and artisanal mining activities are widespread in Mexico, a major global producer of various metals. This study aimed to assess the ecological impairments resulting from mining activities using aquatic macroinvertebrates assemblages (MA). A multiple co-inertia analysis was applied to determine the relationships between environmental factors, habitat quality, heavy metals, and aquatic macroinvertebrates in 15 study sites in two different seasons (dry and wet) along two rivers running across the Central Plateau of Mexico. The results revealed three contrasting environmental conditions associated with different MAs. High concentrations of heavy metals, nutrients, and salinity limit the presence of several families of seemingly sensitive macroinvertebrates. These factors were found to influence structural changes in MAs, showing that not only mining activities, but also agriculture and presence of villages in the basin, exert adverse effects on macroinvertebrate assemblages. Diversity indices showed that the lowest diversity matched both the most polluted and the most saline rivers. The rivers studied displayed high alkalinity and hardness levels, which can reduce the availability of metals and cause adverse effects on periphyton by inhibiting photosynthesis and damaging MAs. Aquatic biomonitoring in rivers, impacted by mining and other human activities, is critical for detecting the effect of metals and other pollutants to improve management and conservation strategies. This study supports the design of cost-effective and accurate water quality biomonitoring protocols in developing countries.
The Culex pipiens complex encompasses five species and subspecies of the genus Culex. Over time, a multitude of morphologically indistinguishable species has been assigned to this complex with several species being classified as important vectors for different diseases. Some species of this complex hibernate in subterranean habitats, and it has been proven that viruses can survive this phase of hibernation. However, studies focusing on the environmental requirements, ecology and spatial and temporal distribution patterns of mosquitos in underground habitats are sparse. Here, we investigate the main environmental factors and dependencies of Culex, considering the number of individuals and survival probabilities in underground habitats during the winter months. Methods. Since the State of Hesse, Germany harbors about 3500 to 4000 subterranean shelters ample availability of subterranean habitats there provides a good opportunity to conduct detailed investigations of the Culex pipiens complex. In this study, we identified a sample of 727 specimens of overwintering females within the Culex pipiens complex from 52 different underground sites collected over a period of 23 years using qPCR. A complete data set of samplings of hibernating mosquitos from 698 subterranean habitats in Central Germany over the same period was available to study the spatial and temporal patterns and the effect of temperature and precipitation conditions on these hibernating populations using a generalized linear model (GLM). Results. Our qPCR-results show, similar to aboveground studies of mosquitos, that Culex pipiens pipiens and Culex torrentium occur sympatrically. On the other hand, Culex pipiens molestus occurred very rarely. The GLM revealed no shifts in species composition over time, but different preferences for subterranean hibernacula, chemical effects on overwintering populations as well as effects of annual and seasonal mean temperature and precipitation during the active phase from March to November. Cx. p. pipiens and Cx. torrentium are the most common species within Hessian caves and other underground habitats during winter. They co-occur with different frequency without any patterns in species composition. Weather conditions influence the number of overwintering mosquitos during the activity phase. Depending on cave parameters, the number of mosquitos decreases during the winter months.
Demographic change is supposed to be the most important indirect driver for changing biodiversity. In this article, a systematic review of 148 studies was conducted to examine the scientific evidence for this relationship and to identify potential gaps in research. We explored the spatial distribution of studies, the categories addressed with respect to biodiversity and demographic change, and the ways in which their relationships were conceptualised (spatially and temporally) and valued. The majority of studies were carried out in Africa, Europe and North America. Our analysis confirms the trend that demographic phenomena were mostly found to negatively influence biodiversity. However, a considerable number of studies also point towards impacts that were context dependent, either positive or negative under certain circumstances. In addition to that we identified significant gaps in research. In particular, there is a lack of addressing (1) other demographic aspects such as population decline, age structure or gender differences, (2) spatial variability of, e.g. human population growth, (3) long-term effects of demographic processes, and (4) the context dependency (e.g. regulations/law enforcement, type of human activities, and choice of scale or proxy). We conclude there is evidence that the relationship between biodiversity and demographic change is much more complex than expected and so far represented in research. Thus, we call for a social–ecological biodiversity research that particularly focusses on the functional relation between biodiversity and human activities, namely the different types, context, and interdependent dynamics (spatial and temporal) of this complex relation.
A new species of Charinus is described from Israel and new localities for C. ioanniticus are reported. Charinus israelensis sp. nov. is a cave dwelling species with extremely small median eyes, no median tubercle and reduced lateral eyes. It is similar to C. ioanniticus, which occurs in nearby areas, but can be differentiated by the shape of the carapace, the number of pedipalp spines and the development of the eyes. A detailed comparison is made between the two species, including pictures, drawings and scanning electron micrographs. Charinus ioanniticus is reported here from several new localities in Israel and Turkey. Identification keys to the Charinus species groups and to the species of the bengalensis group are provided.
Mangroves of the Indo-West Pacific have remained poorly explored, so even the diversity of the onchidiid slugs, which are some of the most abundant animals in mangroves of the Indo-West Pacific, is not well known. Thanks to several years spent exploring mangroves in the Indo-West Pacific (more than 260 stations), especially in South-East Asia, the diversity of mangrove gastropods can now be addressed through revisions following an integrative taxonomy approach (nomenclature, field observations, comparative anatomy and DNA sequences). A new genus of onchidiid slugs is described, Paromoionchis Dayrat & Goulding gen. nov., which includes five species, three of which are new: Paromoionchis boholensis Dayrat & Goulding gen. et sp. nov., P. daemelii (Semper, 1880) com. nov., P. goslineri Dayrat & Goulding gen. et sp. nov., P. penangensis Dayrat & Goulding gen. et sp. nov. and P. tumidus (Semper, 1880) comb. nov. Paromoionchis gen. nov. is distributed from western India to the subtropical waters of Japan (33° N) and southeastern Australia (33° S). The creation of new taxon names is supported by rigorous nomenclature: the types of all existing species names in the family were examined, the original descriptions carefully studied and nomenclatural issues addressed. The diversity and biogeography of this new genus is discussed in a broader context.
A new genus of jumping spiders, Bavirecta gen. nov. is proposed to include the type species B. flavopuncta gen. et sp. nov. and Bavirecta exilis (Cao et al., 2016) gen. et comb. nov. Distinguishing characters of Bavirecta gen. nov. include: 1) tubular abdomen, 2) enlarged front legs, 3) straight and
pointed embolus, broadest proximal lobe with black blotches, 4) prolateral tegular lobe, 5) widely separated anterior atria. Furthermore, two new species, Schenkelia aurantia sp. nov. (♂♀) and Brancus calebi (♂) sp. nov., are described and diagnosed. Mogrus frontosus (Simon, 1871) is redescribed based on a male collected from Mandaitivu Island of Jaffna District in Sri Lanka. The genera Brancus Simon, 1902, Mogrus Simon, 1882 and Schenkelia Lessert, 1927 are reported for the first time from Sri Lanka
(Brancus and Schenkelia are recorded for the first time outside Africa).
A new genus and species of owlfly from eastern and southern Africa (Neuroptera: Ascalaphidae)
(2018)
The genus Dorsomitus Tjeder, 1992, is considered a nomen nudum. Dorsomitus gen. nov. is described and validated here. A new combination, Dorsomitus neavei (Kimmins, 1949) gen. et comb. nov. is proposed, Dorsomitus tjederi gen. et sp. nov. is described, and Disparomitus neavei Kimmins, 1949, is designated as type species of the genus Dorsomitus gen. nov.
The calcareous substrate of spring-fed fens makes them unique islands of biodiversity, hosting endangered, vulnerable, and protected vascular plants. Hence, spring-fed fens ecosystems require special conservation attention because many of them are destroyed (e.g. drained, forested) and it is extremely difficult or even impossible to restore the unique hydrogeological and geochemical conditions enabling their function. The long-term perspective of paleoecological studies allows indication of former wetland ecosystem states and provides understanding of their development over millennia. To examine the late Holocene dynamics of a calcareous spring-fed fen (Raganu Mire) ecosystem on the Baltic Sea coast (Latvia) in relation to environmental changes, substrate and human activity, we have undertaken high-resolution analyses of plant macrofossils, pollen, mollusc, stable carbon (δ13C) and oxygen (δ18O) isotopes combined with radiocarbon dating (AMS) in three coring locations. Our study revealed that peat deposits began accumulating ca. 7000 cal. yr BP and calcareous deposits (tufa) from 1450 cal. yr BP, coinciding with regional hydrological changes. Several fire events occurred between 4000 and 1600 cal. yr BP, which appeared to have had a limited effect on local vegetation. The most significant changes in the forest and peatland ecosystems were at 3200 cal. yr BP associated with a dry climate stage and high fire activity, and then between 1400 and 500 cal. yr BP potentially associated with temperature changes during the Medieval Climate Anomaly (MCA) and Little Ice Age. Hydrological disturbances in the peatland catchment from 1400 cal. yr BP were most likely strengthened by human activity (deforestation) in this region. The relationship between the development of this peatland and changes in its catchment area, such as land cover changes or fluctuations in groundwater levels, suggest that protection and restoration of spring-fed fen ecosystems should also include the surrounding catchment. The presence of calcareous sediments, as well as appropriate temperature and local hydrological conditions appear to be the most crucial factors controlling Cladium marisus populations in our site - currently at the eastern limit of its distribution in Europe.
Video and image data are regularly used in the field of benthic ecology to document biodiversity. However, their use is subject to a number of challenges, principally the identification of taxa within the images without associated physical specimens. The challenge of applying traditional taxonomic keys to the identification of fauna from images has led to the development of personal, group, or institution level reference image catalogues of operational taxonomic units (OTUs) or morphospecies. Lack of standardisation among these reference catalogues has led to problems with observer bias and the inability to combine datasets across studies. In addition, lack of a common reference standard is stifling efforts in the application of artificial intelligence to taxon identification. Using the North Atlantic deep sea as a case study, we propose a database structure to facilitate standardisation of morphospecies image catalogues between research groups and support future use in multiple front-end applications. We also propose a framework for coordination of international efforts to develop reference guides for the identification of marine species from images. The proposed structure maps to the Darwin Core standard to allow integration with existing databases. We suggest a management framework where high-level taxonomic groups are curated by a regional team, consisting of both end users and taxonomic experts. We identify a mechanism by which overall quality of data within a common reference guide could be raised over the next decade. Finally, we discuss the role of a common reference standard in advancing marine ecology and supporting sustainable use of this ecosystem.