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BACKGROUND: Acetogenic bacteria are able to use CO2 as terminal electron acceptor of an anaerobic respiration, thereby producing acetate with electrons coming from H2. Due to this feature, acetogens came into focus as platforms to produce biocommodities from waste gases such as H2+CO2 and/or CO. A prerequisite for metabolic engineering is a detailed understanding of the mechanisms of ATP synthesis and electron-transfer reactions to ensure redox homeostasis. Acetogenesis involves the reduction of CO2 to acetate via soluble enzymes and is coupled to energy conservation by a chemiosmotic mechanism. The membrane-bound module, acting as an ion pump, was of special interest for decades and recently, an Rnf complex was shown to couple electron flow from reduced ferredoxin to NAD+ with the export of Na+ in Acetobacterium woodii. However, not all acetogens have rnf genes in their genome. In order to gain further insights into energy conservation of non-Rnf-containing, thermophilic acetogens, we sequenced the genome of Thermoanaerobacter kivui.
RESULTS: The genome of Thermoanaerobacter kivui comprises 2.9 Mbp with a G+C content of 35% and 2,378 protein encoding orfs. Neither autotrophic growth nor acetate formation from H2+CO2 was dependent on Na+ and acetate formation was inhibited by a protonophore, indicating that H+ is used as coupling ion for primary bioenergetics. This is consistent with the finding that the c subunit of the F1FO ATP synthase does not have the conserved Na+ binding motif. A search for potential H+-translocating, membrane-bound protein complexes revealed genes potentially encoding two different proton-reducing, energy-conserving hydrogenases (Ech).
CONCLUSIONS: The thermophilic acetogen T. kivui does not use Na+ but H+ for chemiosmotic ATP synthesis. It does not contain cytochromes and the electrochemical proton gradient is most likely established by an energy-conserving hydrogenase (Ech). Its thermophilic nature and the efficient conversion of H2+CO2 make T. kivui an interesting acetogen to be used for the production of biocommodities in industrial micobiology. Furthermore, our experimental data as well as the increasing number of sequenced genomes of acetogenic bacteria supported the new classification of acetogens into two groups: Rnf- and Ech-containing acetogens.
In the 1960s, theoretical concepts prepared the path to nuclear matter with proton and neutron numbers far beyond the nuclei known at that time. The new laboratory GSI was founded for research on reactions with heavy ions, in particular those for production of the predicted super-heavy nuclei. In this contribution it is presented how the interaction between experiment and theory resulted in a continuous improvement of the experimental set-ups on the one hand, and of the knowledge of the processes during the nuclear reaction and of the properties of the produced nuclei on the other hand. In the course of this work six new elements from 107 to 112 were produced and identified. An overview of the present status of experimental results and a comparison with theoretical interpretations is given.
Background: Due to the steadily increasing number of cancer patients worldwide the early diagnosis and treatment of cancer is a major field of research. The diagnosis of cancer is mostly performed by an experienced pathologist via the visual inspection of histo-pathological stained tissue sections. To save valuable time, low quality cryosections are frequently analyzed with diagnostic accuracies that are below those of high quality embedded tissue sections. Thus, alternative means have to be found that enable for fast and accurate diagnosis as the basis of following clinical decision making.
Methods: In this contribution we will show that the combination of the three label-free non-linear imaging modalities CARS (coherent anti-Stokes Raman-scattering), TPEF (two-photon excited autofluorescence) and SHG (second harmonic generation) yields information that can be translated into computational hematoxylin and eosin (HE) images by multivariate statistics. Thereby, a computational HE stain is generated resulting in pseudo-HE overview images that allow for identification of suspicious regions. The latter are analyzed further by Raman-spectroscopy retrieving the tissue’s molecular fingerprint.
Results: The results suggest that the combination of non-linear multimodal imaging and Raman-spectroscopy possesses the potential as a precise and fast tool in routine histopathology.
Conclusions: As the key advantage, both optical methods are non-invasive enabling for further pathological investigations of the same tissue section, e.g. a direct comparison with the current pathological gold-standard.
We present techniques to prove termination of cycle rewriting, that is, string rewriting on cycles, which are strings in which the start and end are connected. Our main technique is to transform cycle rewriting into string rewriting and then apply state of the art techniques to prove termination of the string rewrite system. We present three such transformations, and prove for all of them that they are sound and complete. In this way not only termination of string rewriting of the transformed system implies termination of the original cycle rewrite system, a similar conclusion can be drawn for non-termination. Apart from this transformational approach, we present a uniform framework of matrix interpretations, covering most of the earlier approaches to automatically proving termination of cycle rewriting. All our techniques serve both for proving termination and relative termination. We present several experiments showing the power of our techniques.
Profiles of CFC-11 (CCl3F) and CFC-12 (CCl2F2) of the Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) aboard the European satellite Envisat have been retrieved from versions MIPAS/4.61 to MIPAS/4.62 and MIPAS/5.02 to MIPAS/5.06 level-1b data using the scientific level-2 processor run by Karlsruhe Institute of Technology (KIT), Institute of Meteorology and Climate Research (IMK) and Consejo Superior de Investigaciones Científicas (CSIC), Instituto de Astrofísica de Andalucía (IAA). These profiles have been compared to measurements taken by the balloon-borne cryosampler, Mark IV (MkIV) and MIPAS-Balloon (MIPAS-B), the airborne MIPAS-STRatospheric aircraft (MIPAS-STR), the satellite-borne Atmospheric Chemistry Experiment Fourier transform spectrometer (ACE-FTS) and the High Resolution Dynamic Limb Sounder (HIRDLS), as well as the ground-based Halocarbon and other Atmospheric Trace Species (HATS) network for the reduced spectral resolution period (RR: January 2005–April 2012) of MIPAS. ACE-FTS, MkIV and HATS also provide measurements during the high spectral resolution period (full resolution, FR: July 2002–March 2004) and were used to validate MIPAS CFC-11 and CFC-12 products during that time, as well as profiles from the Improved Limb Atmospheric Spectrometer, ILAS-II. In general, we find that MIPAS shows slightly higher values for CFC-11 at the lower end of the profiles (below ∼ 15 km) and in a comparison of HATS ground-based data and MIPAS measurements at 3 km below the tropopause. Differences range from approximately 10 to 50 pptv ( ∼ 5–20 %) during the RR period. In general, differences are slightly smaller for the FR period. An indication of a slight high bias at the lower end of the profile exists for CFC-12 as well, but this bias is far less pronounced than for CFC-11 and is not as obvious in the relative differences between MIPAS and any of the comparison instruments. Differences at the lower end of the profile (below ∼ 15 km) and in the comparison of HATS and MIPAS measurements taken at 3 km below the tropopause mainly stay within 10–50 pptv (corresponding to ∼ 2–10 % for CFC-12) for the RR and the FR period. Between ∼ 15 and 30 km, most comparisons agree within 10–20 pptv (10–20 %), apart from ILAS-II, which shows large differences above ∼ 17 km. Overall, relative differences are usually smaller for CFC-12 than for CFC-11. For both species – CFC-11 and CFC-12 – we find that differences at the lower end of the profile tend to be larger at higher latitudes than in tropical and subtropical regions. In addition, MIPAS profiles have a maximum in their mixing ratio around the tropopause, which is most obvious in tropical mean profiles. Comparisons of the standard deviation in a quiescent atmosphere (polar summer) show that only the CFC-12 FR error budget can fully explain the observed variability, while for the other products (CFC-11 FR and RR and CFC-12 RR) only two-thirds to three-quarters can be explained. Investigations regarding the temporal stability show very small negative drifts in MIPAS CFC-11 measurements. These instrument drifts vary between ∼ 1 and 3 % decade−1. For CFC-12, the drifts are also negative and close to zero up to ∼ 30 km. Above that altitude, larger drifts of up to ∼ 50 % decade−1 appear which are negative up to ∼ 35 km and positive, but of a similar magnitude, above.
The geminal frustrated Lewis pair tBu2PCH2B(Fxyl)2 (1; Fxyl=3,5-(CF3)2C6H3) is accessible in 65 % yield from tBu2PCH2Li and (Fxyl)2BF. According to NMR spectroscopy and X-ray crystallography, 1 is monomeric both in solution and in the solid state. The intramolecular P⋅⋅⋅B distance of 2.900(5) Å and the full planarity of the borane site exclude any significant P/B interaction. Compound 1 readily activates a broad variety of substrates including H2, EtMe2SiH, CO2/CS2, Ph2CO, and H3CCN. Terminal alkynes react with heterolysis of the C−H bond. Haloboranes give cyclic adducts with strong P−BX3 and weak R3B−X bonds. Unprecedented transformations leading to zwitterionic XP/BCX3 adducts occur on treatment of 1 with CCl4 or CBr4 in Et2O. In less polar solvents (C6H6, n-pentane), XP/BCX3 adduct formation is accompanied by the generation of significant amounts of XP/BX adducts. FLP 1 catalyzes the hydrogenation of PhCH=NtBu and the hydrosilylation of Ph2CO with EtMe2SiH.
In the complex network of nuclear hormone receptors, the long non-coding RNAs (lncRNAs) are emerging as critical determinants of hormone action. Here we investigated the involvement of selected cancer-associated lncRNAs in Estrogen Receptor (ER) signaling. Prior studies by Chromatin Immunoprecipitation (ChIP) Sequencing showed that in prostate cancer cells ERs form a complex with the endothelial nitric oxide synthase (eNOS) and that in turn these complexes associate with chromatin in an estrogen-dependent fashion. Among these associations (peaks) we focused our attention on those proximal to the regulatory region of HOTAIR and MALAT1. These transcripts appeared regulated by estrogens and able to control ERs function by interacting with ERα/ERβ as indicated by RNA-ChIP. Further studies performed by ChIRP revealed that in unstimulated condition, HOTAIR and MALAT1 were present on pS2, hTERT and HOTAIR promoters at the ERE/eNOS peaks. Interestingly, upon treatment with17β-estradiol HOTAIR recruitment to chromatin increased significantly while that of MALAT1 was reduced, suggesting an opposite regulation and function for these lncRNAs. Similar results were obtained in cells and in an ex vivo prostate organotypic slice cultures. Overall, our data provide evidence of a crosstalk between lncRNAs, estrogens and estrogen receptors in prostate cancer with important consequences on gene expression regulation.
In recent years, there have been prominent calls for a new social contract that accords a more central role to citizens in health research. Typically, this has been understood as citizens and patients having a greater voice and role within the standard research enterprise. Beyond this, however, it is important that the renegotiated contract specifically addresses the oversight of a new, path-breaking approach to health research: participant-led research. In light of the momentum behind participant-led research and its potential to advance health knowledge by challenging and complementing traditional research, it is vital for all stakeholders to work together in securing the conditions that will enable it to flourish.
GABARAP belongs to an evolutionary highly conserved gene family that has a fundamental role in autophagy. There is ample evidence for a crosstalk between autophagy and apoptosis as well as the immune response. However, the molecular details for these interactions are not fully characterized. Here, we report that the ablation of murine GABARAP, a member of the Atg8/LC3 family that is central to autophagosome formation, suppresses the incidence of tumor formation mediated by the carcinogen DMBA and results in an enhancement of the immune response through increased secretion of IL-1β, IL-6, IL-2 and IFN-γ from stimulated macrophages and lymphocytes. In contrast, TGF-β1 was significantly reduced in the serum of these knockout mice. Further, DMBA treatment of these GABARAP knockout mice reduced the cellularity of the spleen and the growth of mammary glands through the induction of apoptosis. Gene expression profiling of mammary glands revealed significantly elevated levels of Xaf1, an apoptotic inducer and tumor-suppressor gene, in knockout mice. Furthermore, DMBA treatment triggered the upregulation of pro-apoptotic (Bid, Apaf1, Bax), cell death (Tnfrsf10b, Ripk1) and cell cycle inhibitor (Cdkn1a, Cdkn2c) genes in the mammary glands. Finally, tumor growth of B16 melanoma cells after subcutaneous inoculation was inhibited in GABARAP-deficient mice. Together, these data provide strong evidence for the involvement of GABARAP in tumorigenesis in vivo by delaying cell death and its associated immune-related response.
Paul Baran, 1926 in Polen geboren, als Zweijähriger in die USA gekommen, hatte nach Abschluss seines Studiums Ende der 1940er Jahre bereits Erfahrung in der Entwicklung des ersten kommerziellen Computers UNIVC gemacht. 1959 trat Baran in den Dienst der RAND Corporation und war mit der Beforschung von Konzepten der Dezentralisierung von Kommunikationsnetzwerken betraut. "On Distributed Communications Networks" stellte das erste Ergebnis seiner Arbeit dar und erschien in der Reihe der Arbeitspapiere des RAND. Obwohl 1962 Computer gerade erst zwanzig Jahre existierten, extrem teuer waren, raumfüllende Ausmaße hatten und ihre Vernetzung exotische Technologie darstellte, kulminiert Barans Konzept bereits in der visionären Frage: "Is it time now to start thinking about a new and possibly non-existant public utility, a common user digital data communication plant designed specifically for the transmission of digital data among a large set of subscribers?"
This paper introduces a novel research tool for the field of linguistics: The Linjgujisjtik web portal provides a virtual library which offers scientific information on every linguistic subject. It comprises selected internet sources and databases as well as catalogues for linguistic literature, and addresses an interdisciplinary audience. The virtual library is the most recent outcome of the Special Subject Collection Linguistics of the German Research Foundation (DFG), and also integrates the knowledge accumulated in the Bibliography of Linguistic Literature. In addition to the portal, we describe long-term goals and prospects with a special focus on ongoing efforts regarding an extension towards integrating language resources and Linguistic Linked Open Data.
On 14 September 2016, the European Commission proposed a Directive on “copyright in the Digital Single Market”. This proposal includes an Article 11 on the “protection of press publications concerning digital uses”, according to which “Member States shall provide publishers of press publications with the rights provided for in Article 2 and Article 3(2) of Directive 2001/29/EC for the digital use of their press publications.” Relying on the experiences and debates surrounding the German and Spanish laws in this area, this study presents a legal analysis of the proposal for an EU related right for press publishers (RRPP). After a brief overview over the general limits of the EU competence to introduce such a new related right, the study critically examines the purpose of an RRPP. On this basis, the next section distinguishes three versions of an RRPP with regard to its subject-matter and scope, and considers the practical and legal implications of these alternatives, in particular having regard to fundamental rights.
Bücherschau
(1994)
Das Programm ESPRESSO wurde entwickelt, um in Vegetationstabellen Gruppen von Arten und Aufnahmen aufzufinden, bei denen sich Nennungen innerhalb der Tabelle konzentrieren. Diese Gruppen genügen einem Mindestkriterium hinsichtlich der Dichte ihrer Zeilen (relative Häufigkeit von Arten) und ihrer Spalten (relative Artenzahl). Bei einer Mindestdichte von beispielsweise 50% entstehen Gruppen, deren Arten in mindestens 50% der Aufnahmen der Gruppe enthalten sind und deren Aufnahmen gleichzeitig mindestens 50% der Arten der Gruppe umfassen. Die Bildung dieser Arten-Aufnahmen-Gruppen stellt eine sehr effektive Vorsortierung des Aufnahmematerials dar. Mit Hilfe der Gruppen kann anschließend die gesamte Tabelle leicht strukturiert werden, wie anhand einer Beispieltabelle mit Grünlandaufnahmen gezeigt wird.
Es wird das Computerprogramm HITAB vorgestellt, das die Eingabe pflanzensoziologischer Daten stark erleichtert (rasches, fehlerfreies Eintippen), und die so erfassten Daten in die Formate einiger gängiger Programme konvertiert (TAB, TWINSPAN, DECORANA, CANOCO, SYN-TAX, VEGBASE, FLORA D), sowie die Ausgabe von Aufnahmelisten und Artenlisten in Textformat (ASCII) ermöglicht.
Anhand von phänologischen Beobachtungen an etwa 30 Pflanzenarten wurde der Harz nach der von ELLENBERG (1954) entwickelten Methode kartiert. In der daraus erstellten Wärmestufen-Karte können 6 verschiedene Stufen der phänologischen Entwicklung unterschieden werden. Diese werden mit der Höhenstufung der Vegetation und Temperaturdaten des Harzes verglichen. Neben allgemeinen Problemen phänologischer Kartierungen werden die besonderen Probleme der Kartierung im Harz erörtert.
In einem Grünlandgebiet des nordosthessischen Berglandes werden auf der Grundlage einer pflanzensoziologischen und strukturellen Erfassung der Vegetation die Falterzönosen beschrieben und ihre Beziehungen zur Vegetation aufgezeigt. Dazu wurden Transektzählungen von Tagfaltern (Papilionioidea) und Widderchen (Zygaenidae) in verschiedenen Grünlandtypen (Halbtrockenrasen, Frischgrünland, Feuchtgrünland) durchgeführt. Anhand von Blütenbesuchsbeobachtungen werden die Präferenzen der Tagfalter und Widderchen für bestimmte Blumentypen und Blütenfarben sowie die Nektarpflanzenspektren einzelner Arten dargestellt. Als für die Habitatpräferenzen der Falterarten entscheidende ökologische Faktoren werden Nahrungsangebot, Mikroklima, Struktur der Vegetation sowie Nutzungsart und -intensität diskutiert. Die Ergebnisse der Transektzählungen ermöglichen unter Berücksichtigung dieser Faktoren eine Bewertung der untersuchten Grünlandtypen als Lebensraum für Tagfalter und Widderchen.
Im Mai 1991 wurde eine floristische Untersuchung im Hamburger Hafen durchgeführt, hauptsächlich ausgerichtet auf die Verbreitung der Adventivpflanzen. Hiernach sind 53 Arten und Unterarten synanthroper (besonders Adventiv-)Pflanzen (einschließlich der Moose und Flechten) mit Angabe einzelner Lokalitäten angeführt. Außerdem wurde auf die Verbreitung und Struktur von Ruderal-Gesellschaften geachtet. Die bedeutsamsten Funde synanthroper Pflanzen sind Festuca arundinacea ssp. uechtritziana (neu für Hamburg), weiter Alyssum saxatile (Kulturflüchtling), Cerastium semidecandrum, Erysimum virgatum, Geranium molle, Poa bulbosa, Senecio inaequidens, S. vernalis (alles wiederholte Funde) und Solanum carolinense (zweiter Fund in Hamburg). Die Frühjahrsflora des Hamburger Hafens ist an Adventivpflanzen relativ arm. Im Gebiet des Hamburger Hafens wurden folgende Ruderal-Gesellschaften notiert: Epilobio angustifolii-Salicetum capreae, Funarietum hygrometricae typicum (Tab. 1) und marchantietosum polymorphae, Herniarietum glabrae (eine Vegetationsaufnahme) und Saxifraga tridactylites-Gesellschaft (Tab. 2).
Zur Verbreitung und Ökologie von Atriplex sagittata BORKH. (Glanz-Melde) im nördlichen Rheinland
(1994)
Atriplex sagittata BORKH. (Atriplex nitens Schkuhr) wurde schon vor 1850 gelegentlich ins Rheinland eingeschleppt, etablierte sich hier aber erst nach 1945 auf den Trümmern des kriegszerstörten Bonn in größerem Maße, um sich mit dem Wiederaufbau in Randgebiete zurückzuziehen. Heute tritt sie auf Müll-, Kehrricht- und Erdabkippflächen in z.T. ausgedehnten Dominanzbeständen auf, für welche die Bezeichnung Lactuco-Atriplicetum sagittatae als nomen novum vorgeschlagen wird. Im Rheinland kommt vor allem die Typische Subassoziation dieser Gesellschaft vor. In den oftmals deutlich geschichteten Beständen können nur wenige andere Stellarietea mediae-Arten nennenswerte Deckungsanteile erreichen. Für die Ausbreitung der Art und die Bildung ausgedehnter Herden ist vor allem die ausgeprägte Heterokarpie der Glanz-Melde verantwortlich. Daneben werden aber offensichtlich ganz spezifische Ansprüche an den Wuchsort gestellt. Die von uns untersuchten Substrate lassen sich als kalkhaltige, schwach alkalische, meist gut mit Phosphor und Kalium versorgte, schluffige Sande charakterisieren. Da Verwechslungen von Atriplex sagittata mit anderen hochwüchsigen Meldenarten nicht auszuschließen sind, werden in einem eigenen Kapitel wesentliche Unterscheidungsmerkmale vorgestellt.