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Fast automated detection of COVID-19 from medical images using convolutional neural networks

  • Coronavirus disease 2019 (COVID-19) is a global pandemic posing significant health risks. The diagnostic test sensitivity of COVID-19 is limited due to irregularities in specimen handling. We propose a deep learning framework that identifies COVID-19 from medical images as an auxiliary testing method to improve diagnostic sensitivity. We use pseudo-coloring methods and a platform for annotating X-ray and computed tomography images to train the convolutional neural network, which achieves a performance similar to that of experts and provides high scores for multiple statistical indices (F1 scores > 96.72% (0.9307, 0.9890) and specificity >99.33% (0.9792, 1.0000)). Heatmaps are used to visualize the salient features extracted by the neural network. The neural network-based regression provides strong correlations between the lesion areas in the images and five clinical indicators, resulting in high accuracy of the classification framework. The proposed method represents a potential computer-aided diagnosis method for COVID-19 in clinical practice.
Metadaten
Author:Shuang LiangORCiD, Huixiang Liu, Yu GuORCiD, Xiuhua Guo, Hongjun Li, Li Li, Zhiyuan WuORCiD, Mengyang Liu, Lixin Tao
URN:urn:nbn:de:hebis:30:3-692834
DOI:https://doi.org/10.1038/s42003-020-01535-7
ISSN:2399-3642
Parent Title (English):Communications biology
Publisher:Springer Nature
Place of publication:London
Document Type:Article
Language:English
Date of Publication (online):2021/01/04
Date of first Publication:2021/01/04
Publishing Institution:Universitätsbibliothek Johann Christian Senckenberg
Release Date:2024/03/11
Tag:Computational biology and bioinformatics; Diseases; Image processing; Infectious diseases
Volume:4.2021
Issue:art. 35
Article Number:35
Page Number:13
First Page:1
Last Page:13
Note:
We would like to thank the Ministry of Science and Technology of the People’s Republic of China (Grant No. 2017YFB1400100) and the National Natural Science Foundation of China (Grant No. 61876059) for their support.
Note:
Code availability

We used standard software packages as described in the “Methods” section. The implementation details of the proposed framework can be downloaded from https://github.com/SHERLOCKLS/Detection-of-COVID-19-from-medical-images.
Note:
Data availability

The data sets used in this study (named Hybrid Datasets) are composed of public data sets from four public data repositories and a hospital data set provided by the cooperative hospital (Beijing Youan hospital). The four public data repositories are Covid-ChestXray-Dataset (CCD), Rsna-pneumonia-detection-challenge (RSNA), Lung Nodule Analysis 2016 (LUNA16), and Images of COVID-19 positive and negative pneumonia patients (ICNP), respectively. Full data of the Hybrid Data sets are available at Figshare (https://doi.org/10.6084/m9.figshare.13235009).
Institutes:Biochemie, Chemie und Pharmazie
Dewey Decimal Classification:5 Naturwissenschaften und Mathematik / 54 Chemie / 540 Chemie und zugeordnete Wissenschaften
5 Naturwissenschaften und Mathematik / 57 Biowissenschaften; Biologie / 570 Biowissenschaften; Biologie
6 Technik, Medizin, angewandte Wissenschaften / 61 Medizin und Gesundheit / 610 Medizin und Gesundheit
Sammlungen:Universitätspublikationen
Licence (German):License LogoCreative Commons - CC BY - Namensnennung 4.0 International