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Inclusive energy spectra of protons, deuterons, and tritons were measured with a telescope of silicon and germanium detectors with a detection range for proton energies up to 200 MeV. Fifteen sets of data were taken using projectiles ranging from protons to 40Ar on targets from 27Al to 238U at bombarding energies from 240 MeV/nucleon to 2.1 GeV/nucleon. Particular attention was paid to the absolute normalization of the cross sections. For three previously reported reactions, He fragment cross sections have been corrected and are presented. To facilitate a comparison with theory the sum of nucleonic charges emitted as protons plus composite particles was estimated and is presented as a function of fragment energy per nucleon in the interval from 15 to 200 MeV/nucleon. For low-energy fragments at forward angles the protons account for only 25% of the nucleonic charges. The equal mass 40Ar plus Ca systems were examined in the center of mass. Here at 0.4 GeV/nucleon 40Ar plus Ca the proton spectra appear to be nearly isotropic in the center of mass over the region measured. Comparisons of some data with firestreak, cascade, and fluid dynamics models indicate a failure of the first and a fair agreement with the latter two. In addition, associated fast charged particle multiplicities (where the particles had energies larger than 25 MeV/nucleon) and azimuthal correlations were measured with an 80 counter array of plastic scintillators. It was found that the associated multiplicities were a smooth function of the total kinetic energy of the projectile. NUCLEAR REACTIONS U(20Ne,X), E / A=240 MeV/nucleon; U(40Ar,X), Ca(40Ar,X), U(20Ne,X), Au(20Ne,X), Ag(20Ne,X), Al(20Ne,X), U(4He,X), Al(4He,X), E / A=390 MeV/nucleon; U(40Ar,X), Ca(40Ar,X), U(20Ne,X), U(4He,X), U(p,X), E / A=1.04 GeV/nucleon; U(20Ne,X), E / A=2.1 GeV/nucleon; measured sigma (E, theta ), X=p,d,t.
Exclusive pi - and charged-particle production in collisions of Ar+KCl is studied at incident energies from 0.4 to 1.8 GeV/u. Complete disintegration of both nuclei is observed. The correlation between pi - and total charge multiplicity shows no islands of anomalous pion production. For constant numbers of proton participants the pi - multiplicity distributions are Poissons. For central collisions <n pi -> increases smoothly and to first order linearly with the c.m. energy. Disagreement with the firestreak model is found. Pacs numbers: 25.70.Hi, 24.10.Dp
Lambda 's produced in central collisions of 40Ar+KC1 at 1.8-GeV/u incident energy were detected in a streamer chamber by their charged-particle decay. For central collisions with impact parameters b<2.4 fm the Lambda production cross section is 7.6±2.2 mb. A calculation in which Lambda production occurs in the early stage of the collision qualitatively reproduces the results but underestimates the transverse momenta. An average Lambda polarization of -0.10±0.05 is observed. PACS numbers: 25.70 Bc
Pion production and charged-particle multiplicity selection in relativistic nuclear collisions
(1982)
Spectra of positive pions with energies of 15-95 MeV were measured for high energy proton, 4He, 20Ne, and 40Ar bombardments of targets of 27Al, 40Ca, 107,109Ag, 197Au, and 238U. A Si-Ge telescope was used to identify charged pions by dE / dx-E and, in addition, stopped pi + were tagged by the subsequent muon decay. In all, results for 14 target-projectile combinations are presented to study the dependence of pion emission patterns on the bombarding energy (from E / A=0.25 to 2.1 GeV) and on the target and the projectile masses. In addition, associated charged-particle multiplicities were measured in an 80-paddle array of plastic scintillators, and used to make impact parameter selections on the pion-inclusive data. NUCLEAR REACTIONS U(20Ne, pi +), E / A=250 MeV; U(40Ar, pi +), Ca(40Ar, pi +), U(20Ne, pi +), Au(20Ne, pi +), Ag(20Ne, pi +), Al(20Ne, pi +), U(4He, pi +), Al(4He, pi +). E / A=400 MeV; Ca(40Ar, pi +), U(20Ne, pi +), U(4He, pi +), U(p, pi +), E / A=1.05), GeV; U(20Ne, pi +), E / A=2.1 GeV; measured sigma (E, theta ), inclusive and selected on associated charged-particle multiplicity.
Energy spectra and angular distributions have been measured of 3He and 4He fragments emitted from Ag and U targets, bombarded with 2.7-GeV protons, and 1.05-GeV/nucleon alpha particles and 16O ions. All cross sections increase dramatically with projectile mass. No narrow peaks are found in the angular distributions or in the energy spectra.
Double-differential cross sections have been measured for high-energy p, d, t, 3He, and 4He particles emitted from uranium targets irradiated with 20Ne ions at energies of 250, 400, and 2100 MeV/nucleon and 4He ions at 400 MeV/nucleon. By using the shape and yield of the proton energy spectra, the shape and yield of the d, t, 3He, and 4He energy spectra can be deduced at all measured angles for all incident projectile energies by assuming that they are formed by a coalescence of cascade nucleons, using a model analogous to that of Butler and Pearson, and Schwarzschild and Zupancic-caron.
A simple model is proposed for the emission of nucleons with velocities intermediate between those of the target and projectile. In this model, the nucleons which are mutually swept out from the target and projectile form a hot quasiequilibrated fireball which decays as an ideal gas. The overall features of the proton-inclusive spectra from 250- and 400-MeV/nucleon 20Ne ions and 400-MeV/nucleon 4He ions interacting with uranium are fitted without any adjustable parameters.
The energy spectra of protons and light nuclei produced by the interaction of 4He and 20Ne projectiles with Al and U targets have been investigated at incident energies ranging from 0.25 to 2.1 GeV per nucleon. Single fragment inclusive spectra have been obtained at angles between 25° and 150°, in the energy range from 30 to 150 MeV/nucleon. The multiplicity of intermediate and high energy charged particles was determined in coincidence with the measured fragments. In a separate study, fragment spectra were obtained in the evaporation energy range from 12C and 20Ne bombardment of uranium. We observe structureless, exponentially decaying spectra throughout the range of studied fragment masses. There is evidence for two major classes of fragments; one with emission at intermediate temperature from a system moving slowly in the lab frame, and the other with high temperature emission from a system propagating at a velocity intermediate between target and projectile. The high energy proton spectra are fairly well reproduced by a nuclear fireball model based on simple geometrical, kinematical, and statistical assumptions. Light cluster emission is also discussed in the framework of statistical models. NUCLEAR REACTIONS U(20Ne,X), E=250 MeV/nucl.; U(20Ne,X), U(α,X) E=400 MeV/nucl.; U(20Ne,X), Al(20Ne,X), E=2.1 GeV/nucl.; measured σ(E,θ), X=p, d, t, 3He,4He. U(20Ne,X), U(α,X), E=400 MeV/nucl.; U(20Ne,X), E=2.1 GeV/nucl.; measured σ(E, θ), Li to O. U(20Ne,X), U(12C,X), E=2.1 GeV/nucl.; measured σ(E, 90°), 4He to B. Nuclear fireballs, coalescence, thermodynamics of light nuclei production.
Results are presented from a search for the decays D0 -> K min pi plus and D0 bar -> K plus pi min in a sample of 3.8x10^6 central Pb-Pb events collected with a beam energy of 158A GeV by NA49 at the CERN SPS. No signal is observed. An upper limit on D0 production is derived and compared to predictions from several models.
Particle production in central Pb+Pb collisions was studied with the NA49 large acceptance spectrometer at the CERN SPS at beam energies of 20, 30, 40, 80, and 158 GeV per nucleon. A change of the energy dependence is observed around 30A GeV for the yields of pions and strange particles as well as for the shapes of the transverse mass spectra. At present only a reaction scenario with onset of deconfinement is able to reproduce the measurements.
The transverse mass spectra of Omega hyperons and phi mesons measured recently by STAR Collaboration in Au+Au collisions at sqrt(s_NN) = 130 GeV are described within a hydrodynamic model of the quark gluon plasma expansion and hadronization. The flow parameters at the plasma hadronization extracted by fitting these data are used to predict the transverse mass spectra of J/psi and psi' mesons.
We argue that the shape of the system-size dependence of strangeness production in nucleus-nucleus collisions can be understood in a picture that is based on the formation of clusters of overlapping strings. A string percolation model combined with a statistical description of the hadronization yields a quantitative agreement with the data at sqrt s_NN = 17.3 GeV. The model is also applied to RHIC energies.
A steep maximum occurs in the Wroblewski ratio between strange and non-strange quarks created in central nucleus-nucleus collisions, of about A=200, at the lower SPS energy square root s approximately equal to 7 GeV. By analyzing hadronic multiplicities within the grand canonical statistical hadronization model this maximum is shown to occur at a baryochemical potential of about 450 MeV. In comparison, recent QCD lattice calculations at finite baryochemical potential suggest a steep maximum of the light quark susceptibility, to occur at similar mu B, indicative of "critical fluctuation" expected to occur at or near the QCD critical endpoint. This endpoint hat not been firmly pinned down but should occur in the 300 MeV < mu c B < 700 MeV interval. It is argued that central collisions within the low SPS energy range should exhibit a turning point between compression/heating, and expansion/cooling at energy density, temperature and mu B close to the suspected critical point. Whereas from top SPS to RHIC energy the primordial dynamics create a turning point far above in epsilon and T, and far below in mu B. And at lower AGS energies the dynamical trajectory stays below the phase boundary. Thus, the observed sharp strangeness maximum might coincide with the critical square root s at which the dynamics settles at, or near the QCD endpoint.
Strangeness enhancement is discussed as a feature specific to relativistic nuclear collisions which create a fireball of strongly interacting matter at high energy density. At very high energy this is suggested to be partonic matter, but at lower energy it should consist of yet unknown hadronic degrees of freedom. The freeze-out of this high density state to a hadron gas can tell us about properties of fireball matter. The hadron gas at the instant of its formation captures conditions directly at the QCD phase boundary at top SPS and RHIC energy, chiefly the critical temperature and energy density.
Relativistic nucleus-nucleus collisions create a "fireball" of strongly interacting matter at high energy density. At very high energy this is suggested to be partonic matter, but at lower energy it should consist of yet unknown hadronic, perhaps coherent degrees of freedom. The freeze-out of this high density state to a hadron gas can tell us about properties of fireball matter. Date (v1): Thu, 19 Dec 2002 12:52:34 GMT (146kb) Date (revised v2): Thu, 16 Jan 2003 15:11:47 GMT (146kb) Date (revised v3): Wed, 14 May 2003 12:49:35 GMT (146kb)
With new data available from the SPS, at 40 and 80 GeV/A, I review the systematics of bulk hadron multiplicities, with prime focus on strangeness production. The classical concept of strangeness enhancement in central AA collisions is reviewed, in view of the statistical hadronization model which suggests to understand strangeness enhancement to arise chiefly in the transition from the canonical to the grand canonical version of that model. I. e. enhancement results from the fading away of canonical suppression. The model also captures the striking strangeness maximum observed in the vicinity of sqrt s approx 8 GeV. A puzzle remains in the understanding of apparent grand canonical order at the lower SPS, and at AGS energies.
Transverse momentum event-by-event fluctuations are studied within the string-hadronic model of high energy nuclear collisions, LUCIAE. Data on non-statistical pT fluctuations in p+p interactions are reproduced. Fluctuations of similar magnitude are predicted for nucleus-nucleus collisions, in contradiction to the preliminary NA49 results. The introduction of a string clustering mechanism (Firecracker Model) leads to a further, significant increase of pT fluctuations for nucleus-nucleus collisions. Secondary hadronic interactions, as implemented in LUCIAE, cause only a small reduction of pT fluctuations.
Hadronic yields and yield ratios observed in Pb+Pb collisions at the SPS energy of 158 GeV per nucleon are known to resemble a thermal equilibrium population at T=180 +/- 10 MeV, also observed in elementary e+ + e- to hadron data at LEP. We argue that this is the universal consequence of the QCD parton to hadron phase transition populating the maximum entropy state. This state is shown to survive the hadronic rescattering and expansion phase, freezing in right after hadronization due to the very rapid longitudinal and transverse expansion that is inferred from Bose-Einstein pion correlation analysis of central Pb+Pb collisions.
A selection of recent data referring to Pb+Pb collisions at the SPS CERN energy of 158 GeV per nucleon is presented which might describe the state of highly excited strongly interacting matter both above and below the deconfinement to hadronization (phase) transition predicted by lattice QCD. A tentative picture emerges in which a partonic state is indeed formed in central Pb+Pb collisions which hadronizes at about T = 185 MeV, and expands its volume more than tenfold, cooling to about 120 MeV before hadronic collisions cease. We suggest further that all SPS collisions, from central S+S onward, reach that partonic phase, the maximum energy density increasing with more massive collision systems.
We investigate the sensitivity of several observables to the density dependence of the symmetry potential within the microscopic transport model UrQMD (ultrarelativistic quantum molecular dynamics model). The same systems are used to probe the symmetry potential at both low and high densities. The influence of the symmetry potentials on the yields of pi-, pi+, the pi-/pi+ ratio, the n/p ratio of free nucleons and the t/3He ratio are studied for neutron-rich heavy ion collisions (208Pb+208Pb, 132Sn+124Sn, 96Zr+96Zr) at E_b=0.4A GeV. We find that these multiple probes provides comprehensive information on the density dependence of the symmetry potential.
We present a detailed study of chemical freeze-out in nucleus-nucleus collisions at beam energies of 11.6, 30, 40, 80 and 158A GeV. By analyzing hadronic multiplicities within the statistical hadronization approach, we have studied the chemical equilibration of the system as a function of center of mass energy and of the parameters of the source. Additionally, we have tested and compared different versions of the statistical model, with special emphasis on possible explanations of the observed strangeness hadronic phase space under-saturation.
Cancer has become one of the most fatal diseases. The Heidelberg Heavy Ion Cancer Therapy (HICAT) has the potential to become an important and efficient treatment method because of its excellent “Bragg peak” characteristics and on-line irradiation control by the PET diagnostics. The dedicated Heidelberg Heavy Ion Cancer Therapy Project includes two ECR ion sources, a RF linear injector, a synchrotron and three treatment rooms. It will deliver 4*10 high 10 protons, or 1*10 high 10 He, or 1*10 high 9 Carbons, or 5*10 high 8 Oxygens per synchrotron cycle with the beam energy 50-430AMeV for the treatments. The RF linear injector consists of a 400AkeV RFQ and of a very compact 7AMeV IH-DTL accelerator operated at 216.816MHz. The development of the IH-DTL within the HICAT project is a great challenge with respect to the present state of the DTL art because of the following reasons: • The highest operating frequency (216.816MHz) of all IH-DTL cavities; • Extremely large cavity length to diameter ratio of about 11; • IH-DTL with three internal triplets; • The highest effective voltage gain per meter (5.5MV/m); • Very short MEBT design for the beam matching. The following achievements have been reached during the development of the IH-DTL injector for HICAT : The KONUS beam dynamics design with LORASR code fulfills the beam requirement of the HICAT synchrotron at the injection point. The simulations for the IH-DTL injector have been performed not only with a homogeneous input beam, but also with the actual particle distribution from the exit of the HICAT RFQ accelerator as delivered by the PARMTEQ code. The output longitudinal normalized emittance for 95% of all particles is 2.00AkeVns, the emittance growth is less than 24%, while the X-X’ and Y-Y’ normalized emittance are 0.77mmmrad and 0.62mmmrad, respectively. The emittance growth in X-X’ is less than 18%, and the emittance growth in Y-Y’ is less than 5%. Based on the transverse envelopes of the transported particles, the redesign of the buncher drift tubes at the RFQ high energy end has been made to get a higher transit time factor for this novel RFQ internal buncher. An optimized effective buncher gap voltage of 45.4KV has been calculated to deliver a minimized longitudinal beam emittance, while the influence of the effective buncher voltage on the transverse emittance can be neglected. Six different tuning concepts were investigated in detail while tuning the 1:2 scaled HICAT IH model cavity. ‘Volume Tuning’ by a variation of the cavity cross sectional area can compensate the unbalanced capacitance distribution in case of an extreme beta-lambda-variation along an IH cavity. ‘Additional Capacitance Plates’ or copper sheets clamped on drift tube stems are a fast way for checking the tuning sensitivity, but they will be replaced by massive copper blocks mounted on the drift tube girders finally. ‘Lens Coupling’ is an important tuning to stabilize the operation mode and to increase or decrease the coupling between neighboring sections. ‘Tube Tuning’ is the fine tuning concept and also the standard tuning method to reach the needed field distributions as well as the gap voltage distributions. ‘Undercut Tuning’ is a very sensitive tuning for the end sections and with respect to the voltage distribution balance along the structure. The different types of ‘plungers’ in the 3rd and 4th sections have different effects on the resonance frequency and on the field distribution. The different triplet stems and the geometry of the cavity end have been also investigated to reach the design field and voltage distributions. Finally, the needed uniform field distribution along the IH-DTL cavity and the corresponding effective voltage distribution were realized, the remaining maximum gap voltage difference was less than 5% for the model cavity. The several important higher order modes were also measured. The RF tuning of the IH-DTL model cavity delivers the final geometry parameters of the IH-DTL power cavity. A rectangular cavity cross section was adopted for the first time for this IH-DTL cavity. This eases the realization of the volume tuning concept in the 1st and 2nd sections. Lens coupling determines the final distance between the triplet and the girder. The triplets are mounted on the lower cavity half shell. The Microwave Studio simulations have been carried out not only for the HICAT model cavity, but also for the final geometry of the IH-DTL power cavity. The field distribution for the operation mode H110 fits to the model cavity measurement as well as the Higher Order Modes. The simulations prove the IH-DTL geometrical design. On the other hand, the precision of one simulation with 2.3 million mesh points for full cross section area and the CPU time more than 15hours on a DELL PC with Intel Pentium 4 of 2.4GHz and 2.096GRAM were exploited to their limit when calculating the real parameters for the two final machining iterations during production. The shunt impedance of the IH-DTL power cavity is estimated by comparison with the existing tanks to about 195.8MOmega/m, which fits to the simulation result of 200.3MOmega/m with reducing the conductivity to the 5.0*10 high 7 Omega-1m-1. The effective shunt impedance is 153 MOmega/m. The needed RF power is 755kW. The expected quality factor of the IH-DTL cavity is about 15600. The IH-DTL power cavity tuning measurements before cavity copper plating have been performed. The results are within the specifications. There is no doubt that the needed accuracy of the voltage distribution will be reached with the foreseen fine tuning concepts in the last steps.
Fluctuations and NA49
(2005)
A systematic analysis of data on strangeness and pion production in nucleon–nucleon and central nucleus–nucleus collisions is presented. It is shown that at all collision energies the pion/baryon and strangeness/pion ratios indicate saturation with the size of the colliding nuclei. The energy dependence of the saturation level suggests that the transition to the Quark Gluon Plasma occurs between 15 A·GeV/c (BNL AGS) and 160 A·GeV/c (CERN SPS) collision energies. The experimental results interpreted in the framework of a statistical approach show that the effective number of degrees of freedom increases in the course of the phase transition and that the plasma created at CERN SPS energies may have a temperature of about 280 MeV (energy density ~ 10 GeV/fm exp-3). The presence of the phase transition can lead to the non–monotonic collision energy dependence of the strangeness/pion ratio. After an initial increase the ratio should drop to the characteristic value for the QGP. Above the transition region the ratio is expected to be collision energy independent. Experimental studies of central Pb+Pb collisions in the energy range 20–160 A·GeV/c are urgently needed in order to localize the threshold energy, and study the properties of the QCD phase transition.
We argue that the measurement of open charm gives a unique opportunity to test the validity of pQCD-based and statistical models of nucleus-nucleus collisions at high energies. We show that various approaches used to estimate D-meson multiplicity in central Pb+Pb collisions at 158 A GeV give predictions which differ by more than a factor of 100. Finally we demonstrate that decisive experimental results concerning the open charm yield in A+A collisions can be obtained using data of the NA49 experiment at the CERN SPS.
Using CORSIKA for simulating extensive air showers, we study the relation between the shower characteristics and features of hadronic multiparticle production at low energies. We report about investigations of typical energies and phase space regions of secondary particles which are important for muon production in extensive air showers. Possibilities to measure relevant quantities of hadron production in existing and planned accelerator experiments are discussed.
The knowledge of the build up time of space charge compensation (SCC) and the investigation of the compensation process is of main interest for low energy beam transport of pulsed high perveance ion beams under space charge compensated conditions. To investigate experimentally the rise of compensation an LEBT system consisting of a pulsed ion source, two solenoids and a drift tube as diagnostic section has been set up. The beam potential has been measured time resolved by a residual gas ion energy analyser (RGA). A numerical simulation for the calculation of self-consistent equilibrium states of the beam plasma has been developed to determine plasma parameters which are difficult measure directly. The results of the simulation has been compared with the measured data to investigate the behavior of the compensation electrons as a function of time. The acquired data shows that the theoretical rise time of space charge compensation is by a factor of two shorter than the build up time determined experimentally. In view of description the process of SCC an interpretation of the gained results is given.
High perveance negative ion beams with low emittance are essential for several next generation particle accelerators (i. g. spallation sources like ESS [1] and SNS [2]). The extraction and transport of these beams have intrinsic difficulties different from positive ion beams. Limitation of beam current and emittance growth have to be avoided. To fulfill the requirements of those projects a detailed knowledge of the physics of beam formation the interaction of the H- with the residual gas and transport is substantial. A compact cesium free H- volume source delivering a low energy high perveance beam (6.5 keV, 2.3 mA, perveance K= 0.0034) has been built to study the fundamental physics of beam transport and will be integrated into the existing LEBT section in the near future. First measurements of the interaction between the ion beam and the residual gas will be presented together with the experimental set up and preliminary results.
For investigation of space charge compensation process due to residual gas ionization and the experimentally study of the rise of compensation, a Low Energy Beam Transport (LEBT) system consisting of an ion source, two solenoids, a decompensation electrode to generate a pulsed decompensated ion beam and a diagnostic section was set up. The potentials at the beam axis and the beam edge were ascertained from time resolved measurements by a residual gas ion energy analyzer. A numerical simulation of self-consistent equilibrium states of the beam plasma has been developed to determine plasma parameters which are difficult to measure directly. The temporal development of the kinetic and potential energy of the compensation electrons has been analyzed by using the numerically gained results of the simulation. To investigate the compensation process the distribution and the losses of the compensation electrons were studied as a function of time. The acquired data show that the theoretical estimated rise time of space charge compensation neglecting electron losses is shorter than the build up time determined experimentally. To describe the process of space charge compensation an interpretation of the achieved results is given.
Low energy beam transport (LEBT) for a future heavy ion driven inertial fusion (HIDIF [1]) facility is a crucial point using a Bi+ beam of 40 mA at 156 keV. High space charge forces (generalised perveance K=3.6*10-3) restrict the use of electrostatic focussing systems. On the other hand magnetic lenses using space charge compensation suffer from the low particle velocity. Additionally the emittance requirements are very high in order to avoid particle losses in the linac and at ring injection [2]. urthermore source noise and rise time of space charge compensation [3] might enhance particle losses and emittance. Gabor lenses [4] using a continuous space charge cloud for focussing could be a serious alternative to conventional LEBT systems. They combine strong cylinder symmetric focussing with partly space charge compensation and low emittance growth due to lower non linear fields. A high tolerance against source noise and current fluctuations and reduced investment costs are other possible advantages. The proof of principle has already been shown [5, 6]. To broaden the experiences an experimental program was started. Therefrom the first experimental results using a double Gabor lens (DGPL, see fig. 1 ) LEBT system for transporting an high perveance Xe+ beam will be presented and the results of numerical simulations will be shown.
The determination of the beam emittance using conventional destructive methods suffers from two main disadvantages. The interaction between the ion beam and the measurement device produces a high amount of secondary particles. Those particles interact with the beam and can change the transport properties of the accelerator. Particularly in the low energy section of high current accelerators like proposed for IFMIF, heavy ion inertial fusion devices (HIDIF) and spallation sources (ESS, SNS) the power deposited on the emittance measurement device can lead to extensive heat on the detector itself and can destruct or at least dejust the device (slit or grit for example). CCD camera measurements of the incident light emitted from interaction of beam ions with residual gas are commonly used for determination of the beam emittance. Fast data acquisition and high time resolution are additional features of such a method. Therefore a matrix formalism is used to derive the emittance from the measured profile of the beam [1,2] which does not take space charge effects and emittance growth into account. A new method to derive the phase space distribution of the beam from a single CCD camera image using statistical numerical methods will be presented together with measurements. The results will be compared with measurements gained from a conventional Allison type (slit-slit) emittance measurement device.
Investigation of the focus shift due to compensation process for low energy ion beam transport
(2000)
In magnetic Low Energy Beam Transport (LEBT) sections space charge compensation helps to enhance the transportable beam current and to reduce emittance growth due to space charge forces. For pulsed beams the time neccesary to establish space charge compensation is of great interest for beam transport. Particularly with regard to beam injection into the first accelerator section (e.g. RFQ) investigation of effects on shift of the beam focus due to space charge compensation are very important. The achieved results helps to obviate a mismatch into the first RFQ. To investigate the space charge compensation due to residual gas ionization, time resolved measurements using pulsed ion beams were performed at the LEBT system at the IAP and at the CEA-Saclay injektion line. A residual gas ion energy analyser (RGIA) equiped with a channeltron was used to measure the potential destribution as a function of time to estimate the rise time of compensation. For time resolved measurements (delta t min=50ns) of the radial density profile of the ion beam a CCD-camera was applied. The measured data were used in a numerical simulation of selfconsistant eqilibrium states of the beam plasma [1] to determine plasma parameters such as the density, the temperature, the kinetic and potential energy of the compensation electrons as a function of time. Measurements were done using focused proton beams (10keV, 2mA at IAP and 92keV, 62mA at CEA-Saclay) to get a better understanding of the influence of the compensation process. An interpretation of the acquired data and the achieved results will be presented.
Influence of space charge fluctuations on the low energy beam transport of high current ion beams
(2000)
For future high current ion accelerators like SNS, ESS or IFMIF the beam behaviour in low energy beam transport sections is dominated by space charge forces. Therefore space charge fluctuations (e. g. source noise) can drastically influence the beam transport properties of the low energy beam transport section. Losses of beam ions and emittance growth are the most severe problems. For electrostatic transport systems either a LEBT design has to be found which is insensitive to variations of the space charge or the origin of the fluctuations has to be eliminated. For space charge compensated transport as proposed for ESS and IFMIF the situation is different: No major influence on beam transport is expected for fluctuations below a cut-off frequency given by the production rate of the compensation particles. Above this frequency the fluctuations can not be compensated by particle production alone, but redistributions of the compensation particles helps to compensate the influence of the fluctuations. Above a second cut-off frequency given by the density and the temperature of the compensation particles their redistribution is too slow to reduce the influence of the space charge fluctuations. Transport simulations for the IFMIF injector including space charge fluctuations will be presented together with a determination of the cut-off frequencies. The results will be compared with measurements of the rise time of space charge compensation.
New results on the production of Xi and Omega hyperons in Pb+Pb interactions at 40 A GeV and Lambda at 30 A GeV are presented. Transverse mass spectra as well as rapidity spectra of these hyperons are shown and compared to previously measured data at different beam energies. The energy dependence of hyperon production (4Pi yields) is discussed. Additionally, the centrality dependence of Xi- production at 40 A GeV is presented.
First results on the production of Xi- and Anti-xi hyperons in Pb+Pb interactions at 40 A GeV are presented. The Anti-xi/Xi- ratio at midrapidity is studied as a function of collision centrality. The ratio shows no significant centrality dependence within statistical errors; it ranges from 0.07 to 0.15. The Anti-xi/Xi- ratio for central Pb+Pb collisions increases strongly with the collision energy.
High perveance negative ion beams with low emittance are essential for several next generation particle accelerators (i. g. spallation sources like ESS [1] and SNS [2]). The extraction and transport of these beams have intrinsic difficulties different from positive ion beams. Limitation of beam current and emittance growth have to be avoided. To fulfill the requirements of those projects a detailed knowledge of the physics of beam formation the interaction of the H- with the residual gas and transport is substantial. A compact cesium free H- volume source delivering a low energy high perveance beam (6.5 keV, 2.3 mA, perveance K= 0.0034) has been built to study the fundamental physics of beam transport and will be integrated into the existing LEBT section in the near future. First measurements of the interaction between the ion beam and the residual gas will be presented together with the experimental set up and preliminary results.
A LEBT system consisting of an ion source, two solenoids, and a diagnostic section has been set up to investigate the space charge compensation process due to residual gas ionization [1] and to study experimentally the rise of compensation. To gain the radial beam potential distribution time resolved measurements of the residual gas ion energy distribution were carried out using a Hughes Rojanski analyzer [2,3]. To measure the radial density profile of the ion beam a CCD-camera performed time resolved measurements, which allow an estimation the rise time of compensation. Further the dynamic effect of the space charge compensation on the beam transport was shown. A numerical simulation under assumption of selfconsistent states [4] of the beam plasma has been used to determine plasma parameters such as the radial density profile and the temperature of the electrons. The acquired data show that the theoretical estimated rise time of space charge compensation neglecting electron losses is shorter than the build up time determined experimentally. An interpretation of the achieved results is given.
To fulfil the requirements of ESS on beam transmission and emittance growth a detailed knowledge of the physics of beam formation as well as the interaction of the H- with the residual gas is substantial. Space charge compensated beam transport using solenoids for ion optics is in favour for the Low Energy Beam Transport (LEBT) between ion source and the first RFQ. Space charge compensation reduces the electrical self fields and beam radii and therefore emittance growth due to aberrations and redistribution. Transport of H- near the ion source is negatively influenced by the dipole fields required for beam extraction and e--dumping and the high gas pressure. The destruction of the rotational symmetry together with the space charge forces causes emittance growth and particle losses within the extraction system. High residual gas pressure near the extractor together with the high cross section for stripping will influence the transmission as well as space charge compensation. Therefore a detailed knowledge of the interaction of the residual gas with the beam and the influence of the external fields on the distribution of the compensation particles is necessary to reduce particle losses and emittance growth. Preliminary experiments using positive hydrogen ions for reference already show the influence of dipole fields on beam emittance. First measurements with H- confirm these results. Additional information on the interactions of the residual gas with the beam ions have been gained from the measurements using the momentum and energy analyser.
Vortrag gehalten an der Tagung "The XVI International Conference on Ultrarelativistic Nucleus-Nucleus Collisions, organized by SUBATECH Laboratory", in Nantes, France, 18-24 Juli 2002.
Rapidity distributions for Lambda and anti-Lambda hyperons in central Pb-Pb collisions at 40, 80 and 158 AGeV and for K 0 s mesons at 158 AGeV are presented. The lambda multiplicities are studied as a function of collision energy together with AGS and RHIC measurements and compared to model predictions. A different energy dependence of the Lambda/pi and anti-Lambda/pi is observed. The anti-Lambda/Lambda ratio shows a steep increase with collision energy. Evidence for a anti-Lambda/anti-p ratio greater than 1 is found at 40 AGeV.
The experiment NA49 at the CERN SPS is a large acceptance detector for charmed hadrons. The identification of neutral strange hadrons Lambda and AntiLambda is based on the measurement of their charged decay particles and the reconstruciton of the decay vertex. The charged particles were measured with the 4 time projection chambers (TPC), two of them are situated inside 2 large dipole magnets, the two others are downstream of the magnet. Lambda and AntiLambda baryons have been measured in central Pb+Pb collisions at 40, 80 and 160 GeV/nucleon over a wide range in rapidity (1 - 5) and transverse momentum (0 - 3 GeV/c). Particle yields and spectra will be shown for the different energies. The results will be put into the existing systematics of Lambda-production as a function of beam energy.
In this paper we present recent results from the NA49 experiment for Lambda and Lambda hyperons produced in central Pb+Pb collisions at 40, 80 and 158 A GeV. Transverse mass spectra and rapidity distributions for Lambda are shown for all three energies. The shape of the rapidity distribution becomes flatter with increasing beam energy. The multiplicities at mid-rapidity as well as the total yields are studied as a function of collision energy including AGS measurements. The ratio Lambda/pi at mid-rapidity and in 4 pi has a maximum around 40 A GeV. In addition, Lambda rapidity distributions have been measured at 40 and 80 A GeV, which allows to study the Lambda Lambda ratio.
Excitation functions for quasi-elastic scattering have been measured at backward angles for the systems 32,34S+197Au and 32,34S+208Pb for energies spanning the Coulomb barrier. Representative distributions, sensitive to the low energy part of the fusion barrier distribution, have been extracted from the data. For the fusion reactions of 32,34S with 197Au couplings related to the nuclear structure of 197Au appear to be dominant in shaping the low energy part of the barrier distibution. For the system 32S+208Pb the barrier distribution is broader and extends further to lower energies, than in the case of 34S+208Pb. This is consistent with the interpretation that the neutron pick-up channels are energetically more favoured in the 32S induced reaction and therefore couple more strongly to the relative motion. It may also be due to the increased collectivity of 32S, when compared with 34S.
A fundamental work on THz measurement techniques for application to steel manufacturing processes
(2004)
The terahertz (THz) waves had not been obtained except by a huge system, such as a free electron laser, until an invention of a photo-mixing technique at Bell laboratory in 1984 [1]. The first method using the Auston switch could generate up to 1 THz [2]. After then, as a result of some efforts for extending the frequency limit, a combination of antennas for the generation and the detection reached several THz [3, 4]. This technique has developed, so far, with taking a form of filling up the so-called THz gap . At the same time, a lot of researches have been trying to increase the output power as well [5-7]. In the 1990s, a big advantage in the frequency band was brought by non-linear optical methods [8-11]. The technique led to drastically expand the frequency region and recently to realize a measurement up to 41 THz [12]. On the other hand, some efforts have yielded new generation and detection methods from other approaches, a CW-THz as well as the pulse generation [13-19]. Especially, a THz luminescence and a laser, originated in a research on the Bloch oscillator, are recently generated from a quantum cascade structure, even at an only low temperature of 60 K [20-22]. This research attracts a lot of attention, because it would be a breakthrough for the THz technique to become widespread into industrial area as well as research, in a point of low costs and easier operations. It is naturally thought that a technology of short pulse lasers has helped the THz field to be developed. As a background of an appearance of a stable Ti:sapphire laser and a high power chirped pulse amplification (CPA) laser, instead of a dye laser, a lot of concentration on the techniques of a pulse compression and amplification have been done. [23] Viewed from an application side, the THz technique has come into the limelight as a promising measurement method. A discovery of absorption peaks of a protein and a DNA in the THz region is promoting to put the technique into practice in the field of medicine and pharmaceutical science from several years ago [24-27]. It is also known that some absorption of light polar-molecules exist in the region, therefore, some ideas of gas and water content monitoring in the chemical and the food industries are proposed [28-32]. Furthermore, a lot of reports, such as measurements of carrier distribution in semiconductors, refractive index of a thin film and an object shape as radar, indicate that this technique would have a wide range of application [33-37]. I believe that it is worth challenging to apply it into the steel-making industry, due to its unique advantages. The THz wavelength of 30-300 ¼m can cope with both independence of a surface roughness of steel products and a detection with a sub-millimeter precision, for a remote surface inspection. There is also a possibility that it can measure thickness or dielectric constants of relatively high conductive materials, because of a high permeability against non-polar dielectric materials, short pulse detection and with a high signal-to-noise ratio of 103-5. Furthermore, there is a possibility that it could be applicable to a measurement at high temperature, for less influence by a thermal radiation, compared with the visible and infrared light. These ideas have motivated me to start this THz work.
Das Ziel der Untersuchung von ultra-relativistischen Schwerionenkollisionen ist die Suche nach dem Quark Gluon Plasma (QGP), einem Zustand hochdichter stark wechselwirkender Materie in dem der Einschluss von Quarks und Gluonen in Hadronen aufgehoben ist. Die bisher gewonnenen experimentellen Hinweise deuten daraufhin,daß in Schwerionenkollisionen bei den derzeit höchsten zur Verfügung stehenden Energien von 158 GeV/Nukleon in Pb+Pb Reaktionen am CERN-SPS die Rahmenbedingungen für einen Phasenübergang von hadronischer Materie zu einer partonischen Phaseerfüllt sind. Die exakte Phasenstruktur stark wechselwirkender Materie hingegen ist derzeit noch nicht vollständig verstanden. Da inklusive hadronische Observablen und "penetrierende Proben" nicht direkt sensitiv auf die Existenz und Natur des Phasenübergangs sind, wurde die Analyse von Einzelereignis-"event-by-event"-Fluktuationenvorgeschlagen. Das Fluktuationsverhalten von Einzelereignis-Observablen sollte direkt sensitiv auf die Natur des zu beobachtenden Phasenübergangssein. In dieser Arbeit wurden Fluktuationen in der "chemischen" Zusammensetzung der Teilchenquelle untersucht und erste Ergebnisse werden präsentiert.
Cold target recoil ion momentum spectroscopy (COLTRIM) has been employed to image the momentum distributions of continuum electrons liberated in the impact of slow He2+ on He and H2. The distributions were measured for fully determined motion of the nuclei that is as a function of the impact parameter and in a well de ned scattering plane The single ionization (SI) of H2 leading to H2+ recoil ions in nondissociative states (He2+ + H+ -> He2+ + H+ + e-) and the transfer ionization (TI) of H2 leading to H2 dissociation into two free protons (He2+ H2 -> He+ + H+ + H+ + e-) were investigated. Similar measurements have been carried out for He target, the corresponding atomic two electron system, i.e. the single ionization (SI) (He2+ + He -> He+ + He2+ e- and the transfer ionization (TI) (He2+ + He -> He+ + He2+ + e-). These measurements have been exploited to understand the results obtained for H target. In comparing the continuum electron momentum distributions for H2 with that for He, a high degree of similarity is observed. In the case of transfer ionization of H2, the electron momentum distributions generated for parallel and perpendicular molecular orientations revealed no orientation dependence. The in scattering plane electron momentum distributions for the transfer ionization of H2 by He2+ and for the transfer ionization of He by He2e showed that the salient feature of these distributions for both collisions systems consists in the appearance of two groups of electrons with difeerent structures. In addition to the group of the saddle electrons forming two jets separated by a valley along the projectile axis we nd a new group of electrons moving with a velocity higher than the projectile velocity These new fast forward electrons result from a narrow range of impact parameters and appear as image saddle in the projectile frame. In contrast to the transfer ionization of He, the fast forward electrons group disappears in the in scattering plane electron momentum distribution generated for the single ionization of He. Instead of this group another new group of electrons appear These electrons exhibit an amount of backscattering These backward elec trons appear as image saddle in the target frame The structures that the saddle electrons show are owing to the quasi molecular nature of the collision process For the TI of H2, the TI of He and the SI of He, a pi-orbital shape of the electron momentum distribution is observed This indicates the importance of the rotational coupling 2-p-theta -> 2p-pi in the initial promotion of the ground state followed by further promotions to the continuum The backward electrons as well as the fast forward electrons are not discussed in the theoretical literature at all. However, a number of obvious indications of the existence of the backward and fast forward electrons could be seen in the experimental works of Abdallah et al. as well as in the theoretical calculations of Sidky et al One might speculate that electrons which are promoted on the saddle for some time during the collision could finally swing around the He+ ion in the way out of the collision, i.e. either around the projectile in the forward direction as in the TI case forming the fast forward electrons or around the recoil ion in the backward direction as in the SI case forming the backward electrons. This might be a result of the strong gradient, and hence the large acceleration of the screened He+ potential.
Compelling evidence for the creation of a new form of matter has been claimed to be found in Pb+Pb collisions at SPS. We discuss the uniqueness of often proposed experimental signatures for quark matter formation in relativistic heavy ion collisions. It is demonstrated that so far none of the proposed signals like J/psi meson production/suppression, strangeness enhancement, dileptons, and directed flow unambigiously show that a phase of deconfined matter has been formed in SPS Pb+Pb collisions. We emphasize the need for systematic future measurements to search for simultaneous irregularities in the excitation functions of several observables in order to come close to pinning the properties of hot, dense QCD matter from data.
We calculate the Gaussian radius parameters of the pion-emitting source in high energy heavy ion collisions, assuming a first order phase transition from a thermalized Quark-Gluon-Plasma (QGP) to a gas of hadrons. Such a model leads to a very long-lived dissipative hadronic rescattering phase which dominates the properties of the two-pion correlation functions. The radii are found to depend only weakly on the thermalization time tau i, the critical temperature T c (and thus the latent heat), and the specific entropy of the QGP. The dissipative hadronic stage enforces large variations of the pion emission times around the mean. Therefore, the model calculations suggest a rapid increase of R out/R side as a function of K T if a thermalized QGP were formed.
The equilibration of hot and dense nuclear matter produced in the central cell of central Au+Au collisions at RHIC (sqrt s = 200 A GeV) energies is studied within a microscopic transport model. The pressure in the cell becomes isotropic at t approx 5 fm/c after beginning of the collision. Within the next 15 fm/c the expansion of matter in the cell proceeds almost isentropically with the entropy per baryon ratio S/A approx 150, and the equation of state in the (P,epsilon) plane has a very simple form, P=0.15 epsilon. Comparison with the statistical model of an ideal hadron gas indicates that the time t approx 20 fm/c may be too short to reach the fully equilibrated state. Particularly, the creation of long-lived resonance-rich matter in the cell decelerates the relaxation to chemical equilibrium. This resonance-abundant state can be detected experimentally after the thermal freeze-out of particles.
The yields of strange particles are calculated with the UrQMD model for p,Pb(158 AGeV)Pb collisions and compared to experimental data. The yields are enhanced in central collisions if compared to proton induced or peripheral Pb+Pb collisions. The enhancement is due to secondary interactions. Nevertheless, only a reduction of the quark masses or equivalently an increase of the string tension provides an adequate description of the large observed enhancement factors (WA97 and NA49). Furthermore, the yields of unstable strange resonances as the Lambda star(1520) resonance or the phi meson are considerably affected by hadronic rescattering of the decay products.
The equilibration of hot and dense nuclear matter produced in the central region in central Au+Au collisions at square root s = 200A GeV is studied within the microscopic transport model UrQMD. The pressure here becomes isotropic at t approx 5 fm/c. Within the next 15 fm/c the expansion of the matter proceeds almost isentropically with the entropy per baryon ratio S/A approx 150. During this period the equation of state in the (P, epsilon)-plane has a very simple form, P = 0.15 epsilon. Comparison with the statistical model (SM) of an ideal hadron gas reveals that the time of approx 20 fm/c may be too short to attain the fully equilibrated state. Particularly, the fractions of resonances are overpopulated in contrast to the SM values. The creation of such a long-lived resonance-rich state slows down the relaxation to chemical equilibrium and can be detected experimentally.
Enhanced antiproton production in Pb(160 AGeV)+Pb reactions: evidence for quark gluon matter?
(2000)
The centrality dependence of the antiproton per participant ratio is studied in Pb(160 AGeV)+Pb reactions. Antiproton production in collisions of heavy nuclei at the CERN/SPS seems considerably enhanced as compared to conventional hadronic physics, given by the antiproton production rates in pp and antiproton annihilation in p p reactions. This enhancement is consistent with the observation of strong in-medium effects in other hadronic observables and may be an indication of partial restoration of chiral symmetry.
The relaxation of hot nuclear matter to an equilibrated state in the central zone of heavy-ion collisions at energies from AGS to RHIC is studied within the microscopic UrQMD model. It is found that the system reaches the (quasi)equilibrium stage for the period of 10-15 fm/c. Within this time the matter in the cell expands nearly isentropically with the entropy to baryon ratio S/A = 150 - 170. Thermodynamic characteristics of the system at AGS and at SPS energies at the endpoints of this stage are very close to the parameters of chemical and thermal freeze-out extracted from the thermal fit to experimental data. Predictions are made for the full RHIC energy square root s = 200$ AGeV. The formation of a resonance-rich state at RHIC energies is discussed.
The behavior of hadronic matter at high baryon densities is studied within Ultrarelativistic Quantum Molecular Dynamics (URQMD). Baryonic stopping is observed for Au+Au collisions from SIS up to SPS energies. The excitation function of flow shows strong sensitivities to the underlying equation of state (EOS), allowing for systematic studies of the EOS. Effects of a density dependent pole of the rho-meson propagator on dilepton spectra are studied for different systems and centralities at CERN energies.
Dilepton spectra are calculated within the microscopic transport model UrQMD and compared to data from the CERES experiment. The invariant mass spectra in the region between 300 MeV and 600 MeV depend strongly on the mass dependence of the rho meson decay width which is not sufficiently determined by the Vector Meson Dominance model. A consistent explanation of both the recent Pb+Au data and the proton induced data can be given without additional medium effects.
The hypothesis of local equilibrium (LE) in relativistic heavy ion collisions at energies from AGS to RHIC is checked in the microscopic transport model. We find that kinetic, thermal, and chemical equilibration of the expanding hadronic matter is nearly reached in central collisions at AGS energy for t >_ fm/c in a central cell. At these times the equation of state may be approximated by a simple dependence P ~= (0.12-0.15) epsilon. Increasing deviations of the yields and the energy spectra of hadrons from statistical model values are observed for increasing bombarding energies. The origin of these deviations is traced to the irreversible multiparticle decays of strings and many-body (N >_ 3) decays of resonances. The violations of LE indicate that the matter in the cell reaches a steady state instead of idealized equilibrium. The entropy density in the cell is only about 6% smaller than that of the equilibrium state.
Local equilibrium in heavy ion collisions. Microscopic model versus statistical model analysis
(1999)
The assumption of local equilibrium in relativistic heavy ion collisions at energies from 10.7 AGeV (AGS) up to 160 AGeV (SPS) is checked in the microscopic transport model. Dynamical calculations performed for a central cell in the reaction are compared to the predictions of the thermal statistical model. We find that kinetic, thermal and chemical equilibration of the expanding hadronic matter are nearly approached late in central collisions at AGS energy for t >= 10 fm/c in a central cell. At these times the equation of state may be approximated by a simple dependence P ~= (0.12-0.15) epsilon. Increasing deviations of the yields and the energy spectra of hadrons from statistical model values are observed for increasing energy, 40 AGeV and 160 AGeV. These violations of local equilibrium indicate that a fully equilibrated state is not reached, not even in the central cell of heavy ion collisions at energies above 10 AGeV. The origin of these findings is traced to the multiparticle decays of strings and many-body decays of resonances.
The behavior of hadronic matter at high baryon densities is studied within Ultrarelativistic Quantum Molecular Dynamics (URQMD). Baryonic stopping is observed for Au+Au collisions from SIS up to SPS energies. The excitation function of flow shows strong sensitivities to the underlying equation of state (EOS), allowing for systematic studies of the EOS. Dilepton spectra are calculated with and without shifting the rho pole. Except for S+Au collisions our calculations reproduce the CERES data.
Quantum Molecular Dynamics (QMD) calculations of central collisions between heavy nuclei are used to study fragment production and the creation of collective flow. It is shown that the final phase space distributions are compatible with the expectations from a thermally equilibrated source, which in addition exhibits a collective transverse expansion. However, the microscopic analyses of the transient states in the intermediate reaction stages show that the event shapes are more complex and that equilibrium is reached only in very special cases but not in event samples which cover a wide range of impact parameters as it is the case in experiments. The basic features of a new molecular dynamics model (UQMD) for heavy ion collisions from the Fermi energy regime up to the highest presently available energies are outlined.
We study the thermodynamic properties of infinite nuclear matter with the Ultrarelativistic Quantum Molecular Dynamics (URQMD), a semiclassical transport model, running in a box with periodic boundary conditions. It appears that the energy density rises faster than T4 at high temperatures of T approx. 200 - 300 MeV. This indicates an increase in the number of degrees of freedom. Moreover, We have calculated direct photon production in Pb+Pb collisions at 160 GeV/u within this model. The direct photon slope from the microscopic calculation equals that from a hydrodynamical calculation without a phase transition in the equation of state of the photon source.
The centrality dependence of (multi-)strange hadron abundances is studied for Pb(158 AGeV)Pb reactions and compared to p(158 GeV)Pb collisions. The microscopic transport model UrQMD is used for this analysis. The predicted Lambda/pi-, Xi-/pi- and Omega-/pi- ratios are enhanced due to rescattering in central Pb-Pb collisions as compared to peripheral Pb-Pb or p-Pb collisions. A reduction of the constituent quark masses to the current quark masses m_s \sim 230 MeV, m_q \sim 10 MeV, as motivated by chiral symmetry restoration, enhances the hyperon yields to the experimentally observed high values. Similar results are obtained by an ad hoc overall increase of the color electric field strength (effective string tension of kappa=3 GeV/fm). The enhancement depends strongly on the kinematical cuts. The maximum enhancement is predicted around midrapidity. For Lambda's, strangeness suppression is predicted at projectile/target rapidity. For Omega's, the predicted enhancement can be as large as one order of magnitude. Comparisons of Pb-Pb data to proton induced asymmetric (p-A) collisions are hampered due to the predicted strong asymmetry in the various rapidity distributions of the different (strange) particle species. In p-Pb collisions, strangeness is locally (in rapidity) not conserved. The present comparison to the data of the WA97 and NA49 collaborations clearly supports the suggestion that conventional (free) hadronic scenarios are unable to describe the observed high (anti-)hyperon yields in central collisions. The doubling of the strangeness to nonstrange suppression factor, gamma_s \approx 0.65, might be interpreted as a signal of a phase of nearly massless particles.
Directed and elliptic flow
(1999)
We compare microscopic transport model calculations to recent data on the directed and elliptic flow of various hadrons in 2 - 10 A GeV Au+Au and Pb (158 A GeV) Pb collisions. For the Au+Au excitation function a transition from the squeeze-out to an in-plane enhanced emission is consistently described with mean field potentials corresponding to one incompressibility. For the Pb (158 A GeV) Pb system the elliptic flow prefers in-plane emission both for protons and pions, the directed flow of protons is opposite to that of the pions, which exhibit anti-flow. Strong directed transverse flow is present for protons and Lambdas in Au (6 A GeV) Au collisions as well. Both for the SPS and the AGS energies the agreement between data and calculations is remarkable.
Microscopic calculations of central collisions between heavy nuclei are used to study fragment production and the creation of collective flow. It is shown that the final phase space distributions are compatible with the expectations from a thermally equilibrated source, which in addition exhibits a collective transverse expansion. However, the microscopic analyses of the transient states in the reaction stages of highest density and during the expansion show that the system does not reach global equilibrium. Even if a considerable amount of equilibration is assumed, the connection of the measurable final state to the macroscopic parameters, e.g. the temperature, of the transient "equilibrium" state remains ambiguous.
We analyze the reaction dynamics of central Pb+Pb collisions at 160 GeV/nucleon. First we estimate the energy density pile-up at mid-rapidity and calculate its excitation function: The energy density is decomposed into hadronic and partonic contributions. A detailed analysis of the collision dynamics in the framework of a microscopic transport model shows the importance of partonic degrees of freedom and rescattering of leading (di)quarks in the early phase of the reaction for E >= 30 GeV/nucleon. The energy density reaches up to 4 GeV/fm 3, 95% of which are contained in partonic degrees of freedom. It is shown that cells of hadronic matter, after the early reaction phase, can be viewed as nearly chemically equilibrated. This matter never exceeds energy densities of 0.4 GeV/fm 3, i.e. a density above which the notion of separated hadrons loses its meaning. The final reaction stage is analyzed in terms of hadron ratios, freeze-out distributions and a source analysis for final state pions.
Thermodynamical variables and their time evolution are studied for central relativistic heavy ion collisions from 10.7 to 160 AGeV in the microscopic Ultrarelativistic Quantum Molecular Dynamics model (UrQMD). The UrQMD model exhibits drastic deviations from equilibrium during the early high density phase of the collision. Local thermal and chemical equilibration of the hadronic matter seems to be established only at later stages of the quasi-isentropic expansion in the central reaction cell with volume 125 fm 3. Baryon energy spectra in this cell are reproduced by Boltzmann distributions at all collision energies for t > 10 fm/c with a unique rapidly dropping temperature. At these times the equation of state has a simple form: P = (0.12 - 0.15) Epsilon. At SPS energies the strong deviation from chemical equilibrium is found for mesons, especially for pions, even at the late stage of the reaction. The final enhancement of pions is supported by experimental data.
Equilibrium properties of infinite relativistic hadron matter are investigated using the Ultrarelativistic Quantum Molecular Dynamics (UrQMD) model. The simulations are performed in a box with periodic boundary conditions. Equilibration times depend critically on energy and baryon densities. Energy spectra of various hadronic species are shown to be isotropic and consistent with a single temperature in equilibrium. The variation of energy density versus temperature shows a Hagedorn-like behavior with a limiting temperature of 130 +/- 10 MeV. Comparison of abundances of different particle species to ideal hadron gas model predictions show good agreement only if detailed balance is implemented for all channels. At low energy densities, high mass resonances are not relevant; however, their importance raises with increasing energy density. The relevance of these different conceptual frameworks for any interpretation of experimental data is questioned.
Local kinetic and chemical equilibration is studied for Au+Au collisions at 10.7 AGeV in the microscopic Ultrarelativistic Quantum Molecular Dynamics model (UrQMD). The UrQMD model exhibits dramatic deviations from equilibrium during the high density phase of the collision. Thermal and chemical equilibration of the hadronic matter seems to be established in the later stages during a quasiisentropic expansion, observed in the central reaction cell with volume 125 fm3. For t > 10 fm/c the hadron energy spectra in the cell are nicely reproduced by Boltzmann distributions with a common rapidly dropping temperature. Hadron yields change drastically and at the late expansion stage follow closely those of an ideal gas statistical model. The equation of state seems to be simple at late times: P = 0.12 Epsilon. The time evolution of other thermodynamical variables in the cell is also presented.
In this paper, the concepts of microscopic transport theory are introduced and the features and shortcomings of the most commonly used ansatzes are discussed. In particular, the Ultrarelativistic Quantum Molecular Dynamics (UrQMD) transport model is described in great detail. Based on the same principles as QMD and RQMD, it incorporates a vastly extended collision term with full baryon-antibaryon symmetry, 55 baryon and 32 meson species. Isospin is explicitly treated for all hadrons. The range of applicability stretches from E lab < 100$ MeV/nucleon up to E lab> 200$ GeV/nucleon, allowing for a consistent calculation of excitation functions from the intermediate energy domain up to ultrarelativistic energies. The main physics topics under discussion are stopping, particle production and collective flow.
Ratios of hadronic abundances are analyzed for pp and nucleus-nucleus collisions at sqrt(s)=20 GeV using the microscopic transport model UrQMD. Secondary interactions significantly change the primordial hadronic cocktail of the system. A comparison to data shows a strong dependence on rapidity. Without assuming thermal and chemical equilibrium, predicted hadron yields and ratios agree with many of the data, the few observed discrepancies are discussed.
We present calculations of two-pion and two-kaon correlation functions in relativistic heavy ion collisions from a relativistic transport model that includes explicitly a first-order phase transition from a thermalized quark-gluon plasma to a hadron gas. We compare the obtained correlation radii with recent data from RHIC. The predicted R_side radii agree with data while the R_out and R_long radii are overestimated. We also address the impact of in-medium modifications, for example, a broadening of the rho-meson, on the correlation radii. In particular, the longitudinal correlation radius R_long is reduced, improving the comparison to data.
We calculate the kaon HBT radius parameters for high energy heavy ion collisions, assuming a first order phase transition from a thermalized Quark-Gluon-Plasma to a gas of hadrons. At high transverse momenta K_T ~ 1 GeV/c direct emission from the phase boundary becomes important, the emission duration signal, i.e., the R_out/R_side ratio, and its sensitivity to T_c (and thus to the latent heat of the phase transition) are enlarged. Moreover, the QGP+hadronic rescattering transport model calculations do not yield unusual large radii (R_i<9fm). Finite momentum resolution effects have a strong impact on the extracted HBT parameters (R_i and lambda) as well as on the ratio R_out/R_side.
We investigate transverse hadron spectra from relativistic nucleus-nucleus collisions which reflect important aspects of the dynamics - such as the generation of pressure - in the hot and dense zone formed in the early phase of the reaction. Our analysis is performed within two independent transport approaches (HSD and UrQMD) that are based on quark, diquark, string and hadronic degrees of freedom. Both transport models show their reliability for elementary pp as well as light-ion (C+C, Si+Si) reactions. However, for central Au+Au (Pb+Pb) collisions at bombarding energies above ~ 5 A.GeV the measured K+- transverse mass spectra have a larger inverse slope parameter than expected from the calculation. Thus the pressure generated by hadronic interactions in the transport models above ~ 5 A.GeV is lower than observed in the experimental data. This finding shows that the additional pressure - as expected from lattice QCD calculations at finite quark chemical potential and temperature - is generated by strong partonic interactions in the early phase of central Au+Au (Pb+Pb) collisions.
We calculate the antibaryon-to-baryon ratios, anti-p/p, anti-Lambda/Lambda, anti-Xi/Xi, and anti-Omega/Omega for Au+Au collisions at RHIC (sqrt{s}_{NN}=200 GeV). The effects of strong color fields associated with an enhanced strangeness and diquark production probability and with an effective decrease of formation times are investigated. Antibaryon-to-baryon ratios increase with the color field strength. The ratios also increase with the strangeness content |S|. The netbaryon number at midrapidity considerably increases with the color field strength while the netproton number remains roughly the same. This shows that the enhanced baryon transport involves a conversion into the hyperon sector (hyperonization) which can be observed in the (Lambda - anti-Lambda)/(p - anti-p) ratio.
We make predictions for the kaon interferometry measurements in Au+Au collisions at the Relativistic Heavy Ion Collider (RHIC). A first order phase transition from a thermalized Quark-Gluon-Plasma (QGP) to a gas of hadrons is assumed for the transport calculations. The fraction of kaons that are directly emitted from the phase boundary is considerably enhanced at large transverse momenta K T ~ 1 GeV/c. In this kinematic region, the sensitivity of the R out/R side ratio to the QGP-properties is enlarged. Here, the results of the 1-dimensional correlation analysis are presented. The extracted interferometry radii, depending on K-Theta, are not unusually large and are strongly affected by momentum resolution effects.
The disappearance of flow
(1995)
We investigate the disappearance of collective flow in the reaction plane in heavy-ion collisions within a microscopic model (QMD). A systematic study of the impact parameter dependence is performed for the system Ca+Ca. The balance energy strongly increases with impact parameter. Momentum dependent interactions reduce the balance energies for intermediate impact parameters b ~ 4.5 fm. Dynamical negative flow is not visible in the laboratory frame but does exist in the contact frame for the heavy system Au+Au. For semi-peripheral collisions of Ca+Ca with b ~ 6.5 fm a new two-component flow is discussed. Azimuthal distributions exhibit strong collectiv flow signals, even at the balance energy.
We investigate hadron production as well as transverse hadron spectra in nucleus-nucleus collisions from 2 A.GeV to 21.3 A.TeV within two independent transport approaches (UrQMD and HSD) that are based on quark, diquark, string and hadronic degrees of freedom. The comparison to experimental data demonstrates that both approaches agree quite well with each other and with the experimental data on hadron production. The enhancement of pion production in central Au+Au (Pb+Pb) collisions relative to scaled pp collisions (the 'kink') is well described by both approaches without involving any phase transition. However, the maximum in the K+/Pi+ ratio at 20 to 30 A.GeV (the 'horn') is missed by ~ 40%. A comparison to the transverse mass spectra from pp and C+C (or Si+Si) reactions shows the reliability of the transport models for light systems. For central Au+Au (Pb+Pb) collisions at bombarding energies above ~ 5 A.GeV, however, the measured K +/- m-theta-spectra have a larger inverse slope parameter than expected from the calculations. The approximately constant slope of K+/-spectra at SPS (the 'step') is not reproduced either. Thus the pressure generated by hadronic interactions in the transport models above ~ 5 A.GeV is lower than observed in the experimental data. This finding suggests that the additional pressure - as expected from lattice QCD calculations at finite quark chemical potential and temperature - might be generated by strong interactions in the early pre-hadronic/partonic phase of central Au+Au (Pb+Pb) collisions.
Report-no: UFTP-492/1999 Journal-ref: Phys.Rev. C61 (2000) 024909 We investigate flow in semi-peripheral nuclear collisions at AGS and SPS energies within macroscopic as well as microscopic transport models. The hot and dense zone assumes the shape of an ellipsoid which is tilted by an angle Theta with respect to the beam axis. If matter is close to the softest point of the equation of state, this ellipsoid expands predominantly orthogonal to the direction given by Theta. This antiflow component is responsible for the previously predicted reduction of the directed transverse momentum around the softest point of the equation of state.
REVTEX, 27 pages incl. 10 figures and 3 tables; Phys. Rev. C (in press) Journal-ref: Phys.Rev. C62 (2000) 064906. We study the local equilibrium in the central V = 125 fm3 cell in heavy-ion collisions at energies from 10.7 A GeV (AGS) to 160 A GeV (SPS) calculated in the microscopic transport model. In the present paper the hadron yields and energy spectra in the cell are compared with those of infinite nuclear matter, as calculated within the same model. The agreement between the spectra in the two systems is established for times t >= 10 fm/c in the central cell. The cell results do not deviate noticeably from the infinite matter calculations with rising incident energy, in contrast to the apparent discrepancy with predictions of the statistical model (SM) of an ideal hadron gas. The entropy of this state is found to be very close to the maximum entropy, while hadron abundances and energy spectra differ significantly from those of the SM.
To be published in J. Phys. G - Proceedings of SQM 2004 : We review the results from the various hydrodynamical and transport models on the collective flow observables from AGS to RHIC energies. A critical discussion of the present status of the CERN experiments on hadron collective flow is given. We emphasize the importance of the flow excitation function from 1 to 50 A.GeV: here the hydrodynamic model has predicted the collapse of the v2-flow ~ 10 A.GeV; at 40 A.GeV it has been recently observed by the NA49 collaboration. Since hadronic rescattering models predict much larger flow than observed at this energy we interpret this observation as evidence for a first order phase transition at high baryon density r b. Moreover, the connection of the elliptic flow v2 to jet suppression is examined. It is proven experimentally that the collective flow is not faked by minijet fragmentation. Additionally, detailed transport studies show that the away-side jet suppression can only partially (< 50%) be due to hadronic rescattering. Furthermore, the change in sign of v1, v2 closer to beam rapidity is related to the occurence of a high density first order phase transition in the RHIC data at 62.5, 130 and 200 A.GeV.
We investigate hadron production and transverse hadron spectra in nucleus-nucleus collisions from 2 A·GeV to 21.3 A·TeV within two independent transport approaches (UrQMD and HSD) based on quark, diquark, string and hadronic degrees of freedom. The enhancement of pion production in central Au+Au (Pb+Pb) collisions relative to scaled pp collisions (the ’kink’) is described well by both approaches without involving a phase transition. However, the maximum in the K+ p+ ratio at 20 to 30 A·GeV (the ’horn’) is missed by ~ 40%. Also, at energies above ~5 A·GeV, the measured K± mT-spectra have a larger inverse slope than expected from the models. Thus the pressure generated by hadronic interactions in the transport models at high energies is too low. This finding suggests that the additional pressure - as expected from lattice QCD at finite quark chemical potential and temperature - might be generated by strong interactions in the early pre-hadronic/partonic phase of central heavy-ion collisions. Finally, we discuss the emergence of density perturbations in a first-order phase transition and why they might affect relative hadron multiplicities, collective flow, and hadron mean-free paths at decoupling. A minimum in the collective flow v2 excitation function was discovered experimentally at 40 A·GeV - such a behavior has been predicted long ago as signature for a first order phase transition.
We investigate hadron production as well as transverse hadron spectra from proton-proton, proton-nucleus and nucleus-nucleus collisions from 2 A·GeV to 21.3 A·TeV within two independent transport approaches (HSD and UrQMD) that are based on quark, diquark, string and hadronic degrees of freedom. The comparison to experimental data on transverse mass spectra from pp, pA and C+C (or Si+Si) reactions shows the reliability of the transport models for light systems. For central Au+Au (Pb+Pb) collisions at bombarding energies above ~5 A·GeV, furthermore, the measured K± transverse mass spectra have a larger inverse slope parameter than expected from the default calculations. We investigate various scenarios to explore their potential effects on the K± spectra. In particular the initial state Cronin effect is found to play a substantial role at top SPS and RHIC energies. However, the maximum in the K+/..+ ratio at 20 to 30 A·GeV is missed by 40% and the approximately constant slope of the K± spectra at SPS energies is not reproduced either. Our systematic analysis suggests that the additional pressure - as expected from lattice QCD calculations at finite quark chemical potential µq and temperature T- should be generated by strong interactions in the early pre-hadronic/partonic phase of central Au+Au (Pb+Pb) collisions.
We investigate the effects of strong color fields and of the associated enhanced intrinsic transverse momenta on the phi-meson production in ultrarelativistic heavy ion collisions at RHIC. The observed consequences include a change of the spectral slopes, varying particle ratios, and also modified mean transverse momenta. In particular, the composition of the production processes of phi-mesons, that is, direct production vs. coalescence-like production, depends strongly on the strength of the color fields and intrinsic transverse momenta and thus represents a sensitive probe for their measurement.
Im Rahmen dieser Dissertation wurde die Photophysik und die elektronische Struktur einer Klasse neuartiger Donator-Akzeptor-Ladungstransfer-Komplexe untersucht. Im Wesentlichen bestehen diese Verbindungen aus einem Ferrocen-Donator (Fc) und organischen Akzeptoren, die über B-N-Bindungen verbrückt sind, welche sich bei dieser Art von makromolekularen Systemen spontan bilden. Zentraler Gegenstand dieser Arbeit war die spektroskopische Untersuchung des Metall-zu-Ligand-Ladungstransfers (engl. Abkürzung: MLCT) im elektronischen Anregungszustand dieser kationischen Komplexverbindungen, die im Weiteren als „Fc-B-bpy“-Verbindungen bezeichnet werden. Die vorliegende Arbeit analysiert eine Vielzahl miteinander verwandter Fc-B-bpy-Derivate. Die Arbeit ist gegliedert in 1.) die Analyse der Absorptionsspektren vom UV- bis zum nahen Infrarot-Spektralbereich (250-1000 nm) von Lösungen, dotierten Polymer-Dünnfilmen und Einkristallen, 2.) die zeitaufgelöste optische Spektroskopie des angeregten Zustands auf der Pikosekunden-Zeitskala, 3.) die Analyse elektrochemischer Messungen an Lösungen, und 4.) die Auswertung quantenchemischer Berechnungen. Für die zeitaufgelösten Messungen wurde ein komplexes optisches Spektroskopie-System mit breitbandigen Femtosekunden-Pulsen sowie den entsprechenden zeitaufgelösten Detektionsmethoden (spektral gefilterte Weißlicht-Detektion) aufgebaut. Die Ergebnisse dieser Arbeit beweisen die Existenz eines MLCT-Übergangs mit fast vollständigem Übergang eines Fc-Donator-Elektrons zum B-bpy-Akzeptor bei optischer Anregung. Die vergleichenden Untersuchungen der spektroskopischen Eigenschaften verschiedener Derivate liefern wichtige Information für die Entwicklung neuartiger Derivate, einschließlich verwandter Polymere, mit verbesserten spektroskopischen Eigenschaften. Es wurden transiente Absorptionsmessungen bestimmter Fc-B-bpy-Derivate in Lösung nach gepulster Anregung der MLCT-Bande (bei 500 nm) über einen Zeitbereich von 0,1-1000 ps und einen Wellenlängenbereich von 460-760 nm vorgenommen. Aus den Messergebnissen geht hervor, dass die Relaxation aus dem angeregten MLCT-Zustand in den Grundzustand auf verschiedenen Zeitskalen geschehen kann, welche im Bereich zwischen ~18 und 900 ps liegen. Ein Vergleich verschiedener Derivate mit unterschiedlicher Flexibilität in der Konformation zeigt, dass die Starrheit der Bindungen zwischen Donatoren und Akzeptoren ein wesentlicher Faktor für die Lebensdauer des angeregten Zustands ist. Wenn die Akzeptorgruppen relativ frei rotieren können, ist es der Verbindung möglich, eine Geometrie einzunehmen, von der aus ein effizienter, strahlungsfreier Übergang in den Grundzustand erfolgen kann. Dieser Befund zeigt einen Weg auf, wie neuartige, verwandte Verbindungen mit größerer Lebensdauer das angeregten Zustands synthetisiert werden können, indem darauf geachtet wird, daß eine starre molekulare Architektur zwischen Donator und Akzeptor verwirklicht wird.
Invited talk at the International Workshop XXX on Gross Properties of Nuclei and Nuclear Excitations - Ultrarelativistic Heavy-Ion Collisions, Jan. 13-19, 2002, Hirschegg, Austria. Report-no: LBNL-49674. We discuss predictions for the pion and kaon interferometry measurements in relativistic heavy ion collisions at SPS and RHIC energies. In particular, we confront relativistic transport model calculations that include explicitly a first-order phase transition from a thermalized quark-gluon plasma to a hadron gas with recent data from the RHIC experiments. We critically examine the "HBT-puzzle" both from the theoretical as well as from the experimental point of view. Alternative scenarios are briefly explained.
Invited talk at the XXXIII International Symposium on Multiparticle Dynamics, Krakow, Poland, 5-11 Sept, 2003. 5 pages, 1 figure Journal-ref: Acta Phys.Polon. B35 (2004) 23-28. We review the recent developments on microscopic transport calculations for two-particle correlations at low relative momenta in ultrarelativistic heavy ion collisions at RHIC.
Invited talk at the 7th International Conference on Strangeness in Quark Matter, SQM 2003, Atlantic Beach, North Carolina, USA, 12-17 Mar, 2003. 11 pages, 12 figures. Journal-ref: J.Phys. G30 (2004) S139-S150. We review recent developments in the field of microscopic transport model calculations for ultrarelativistic heavy ion collisions. In particular, we focus on the strangeness production, for example, the phi-meson and its role as a messenger of the early phase of the system evolution. Moreover, we discuss the important e ects of the (soft) field properties on the multiparticle system. We outline some current problems of the models as well as possible solutions to them
The enzyme quinol:fumarate reductase (QFR) from the anaerobic e-proteobacterium Wolinella succinogenes is part of the anaerobic respiratory system of this organism. It couples the reduction of fumarate to succinate to the oxidation of menaquinol to menaquinone. W. succinogenes uses fumarate as terminal electron acceptor and can use various substrates (e.g., formate or molecular hydrogen) as electron donors. The concerted catalytic substrate turnover of either a hydrogenase or a formate dehydrogenase in conjunction with QFR contributes to the generation of an electrochemical potential gradient across the bacterial plasma membrane, which is used for the phosphorylation of ADP with inorganic phosphate, Pi, to ATP. In addition to an FAD (in subunit A) and three iron-sulfur clusters (in subunit B), QFR binds a low- and a high-potential heme b group in its transmembrane subunit C, as was ultimately shown in the crystal structure at 2.2 Å resolution (Lancaster et al., 1999, Nature 402, 377– 385). Both hemes are part of the electron transport chain between the two catalytic sites of this redox enzyme. The midpoint potentials of the hemes are well established but their assignment to the distal and proximal positions in the structure had not yet been determined. Furthermore, QFR from W. succinogenes has been proposed to exhibit a novel coupling mechanism of transmembrane electron and proton transfer, which has been described in the so-called “E-pathway” hypothesis (Lancaster, 2002, Biochim. Biophys. Acta 1565, 215–231). The aim of this project was to characterize the relationship between structure and function of QFR and to investigate the details of the proposed coupling mechanism (“Epathway”) with the help of computer-based electrostatic calculations on the QFR wild-type (WT) coordinates, and electrochemically induced FTIR and VIS difference spectroscopy on the QFR WT and available variant enzymes (in particular enzyme variant E180Q, in which the glutamic acid at position C180 has been replaced by a glutamine). 1.) It was demonstrated in this study that the diheme-containing QFR exhibits stable and reproducible electrochemically induced FTIR difference bands in the midinfrared range from 1800 cm-1 to 1000 cm-1 that reflect transitions from the reduced to the oxidized state of the enzyme. The spectral features that were observed in the FTIR difference spectra are fully reversible when changing from a reductive to an oxidative reference potential at the working electrode and vice versa. This indicates that the underlying redox reactions of the enzyme at the gold grid working electrode are also fully reversible under the applied experimental conditions. The same reversible spectral redox behavior in the visible range could also be ascertained for the Soret- and a-band of the two heme b groups of QFR. This behavior allowed to reliably determine the heme b midpoint potentials of QFR at various pH values. Analysis of the FTIR difference spectra in the amide I range yields evidence for structural reorganizations of the polypeptide backbone upon the electrochemically induced redox reaction. 2.) The redox titrations of the high- and low-potential heme b of QFR as simulated by multiconformation continuum electrostatics (MCCE) calculations showed a very high level of agreement with respect to the experimentally observed midpoint potentials of the heme b groups at pH 7. As determined with the help of the theoretical calculations, prominent features governing the differences in redox potential between the two hemes are the higher loss of reaction field energy for the proximal heme and the stronger destabilization of the oxidized form of the proximal heme due to several buried and ionized Arg and Lys residues. The explicit incorporation of crystallographically identified water molecules in the calculations had a noticeable effect on the absolute values of the determined midpoint potentials, although the relative difference of the two obtained midpoints did not change significantly. The results of the electrostatic calculations clearly showed that the lowpotential heme corresponds to the distal position bD in the structure, and that the high-potential heme is identical to the proximal heme bP. This assignment could previously not be achieved unequivocally with experimental methods. 3.) In addition, the currently discussed mechanism of coupled electron and proton transfer in the QFR of W. succinogenes (i.e., the “E-pathway” hypothesis) is further supported by the results of this study. The simulations of intermediate states of electron transfer via the heme b groups show that the protonation state of the key amino acid residue Glu C180 depends on the redox states of the heme groups as suggested in the “E-pathway” hypothesis. This result yields a possible mechanism for the coupling of transient transmembrane proton transfer via Glu C180 to the electron transfer via the heme b groups, since Glu C180 could be part of a “proton wire” and its redox-dependent protonation state could serve as the regulatory element of the “E-pathway”. Furthermore, the results of simulated heme reduction indicate that the side chain of Glu C180 also changes its conformation with respect to the redox state of the hemes. Both major results concerning the role of Glu C180, the change of protonation as well as the reorientation of the side chain upon reduction of the heme groups, are consistent with the results from electrochemically induced FTIR difference spectroscopy: Of particular interest was the spectral range above 1710 cm-1, where C=O stretching vibrations of protonated COOH carboxyl groups absorb, because those groups can act as proton donors, respectively acceptors, and can be involved in intra-protein proton transfer reactions. It was possible to observe signals of such protonated carboxyl groups originating from QFR enzyme, which either change their protonation state and/or experience an environmental change in the course of the induced redox reaction. This finding was supported by the fact that the relevant FTIR difference signals are sensitive to an isotopic hydrogen/deuterium (1H/2H) exchange via the buffer solution, since they were shifted towards lower wavenumbers in D2O. Furthermore, it could be shown with the help of site-directed mutagenesis that the acidic residue Glu C180, which is located in the membranespanning, diheme-containing subunit C of QFR, is contributing to the redox dependent signal of protonated carboxyl groups. The observed residual signal in the FTIR double-difference spectrum of QFR wild-type and enzyme variant E180Q (Glu C180 has been replaced with a Gln residue) could be interpreted as a protonation/deprotonation event that is superimposed by an environmental effect on the specific C=O vibration. This result strongly supports the proposed “E-pathway” of coupled transmembrane electron and proton transfer in the QFR enzyme, which states that residue Glu C180 is an essential constituent of a transient redox-controlled transmembrane proton transfer pathway. 4.) As a second possible constituent of the suggested “E-pathway”, the ring C propionate of the distal heme was found to be unusually fully protonated in all simulated redox states, indicating a possible role as a transient proton donor/acceptor in the “E-pathway”. Similarly to Glu C180, experimental evidence from FTIR difference spectroscopy on a modified QFR with 13C-labeled heme propionates was obtained, which indicates an involvement of at least one of the two propionates of heme bD in proton transfer. The observed signals can tentatively be interpreted as a redox-coupled (de)protonation of the ring C propionate of bD, which is possibly xiii superimposed by a conformational or environmental change of the specific propionate. 5.) Also the observation of a strong redox Bohr effect for both heme b groups in QFR is in line with the proposed “E-pathway” hypothesis, as this effect yields a possible and well-established mechanism for the coupling of proton transfer and redox changes of the heme groups. The comparison of the observed effect in QFR WT and E180Q together with the results from FTIR spectroscopy and MCCE calculation indicate that the ring C propionate of the distal heme is dominating the pHdependence of the midpoint potential of bD, and that the corresponding group for bP is Glu C180. The origin of the redox Bohr effect for bP in the enzyme variant E180Q (which is dramatically changed with respect to the WT) could not be identified unequivocally, but the observation of this redox Bohr effect in the variant implies the presence of other protolytic groups, which interact with heme bP and which may be necessary for a functional “E-pathway”.
Die vorliegende Arbeit soll einen Beitrag zur Erforschung der Verarbeitungsmechanismen des Gehirns leisten. Die Erregung des komplexen Systems "Hirn" liefert Antworten, deren Analyse zu einem besseren Verständnis dieser Informationsverarbeitung führt. Zu diesem Zweck wurde das Gehirn mit unterschiedlichen visuellen Stimuli angeregt und die hirnelektrischen Signale gemessen, die von Nervenzellgruppen (Multiunits) im visuellen Kortex der Katze ausgesandt wurden.Die verwendeten Stimuli waren ein Streifenmuster sowie eine Zufallspunktverteilung, deren Kohärenz beliebig geändert werden konnte. Darüber hinaus wurden die Antworten auf eine Vielzahl von Stimuli analysiert, die nur aufgrund des Bewegungskontrastes zwischen punktdefiniertem Objekt und Hintergrund zu erkennen sind (Shape-from-Motion- (SFM-) Stimuli). Die aufgenommenen Daten wurden mit Hilfe einer umfangreichen Signalanalyse untersucht. So wurden in Abhängigkeit von der Stimulusbedingung die Anzahl der Nervenimpulse pro Zeiteinheit (Feuerraten), Synchronisation, Frequenzverteilung sowie Kopplung von Aktionspotenzialen und LFPDaten analysiert. Die Experimente im ersten Teil dieser Arbeit untersuchten den Einfluss von Kohärenz auf die Verarbeitung von Bewegungsinformation im primären visuellen Areal (A17) und im posteromedialen lateralen suprasylvischen Sulcus (Area PMLS) der Katze. Es konnte gezeigt werden, dass Multiunits in A17 und PMLS sowohl auf Streifenmuster als auch auf Zufallspunktverteilungen antworten und dass die Stärke der Antwort als eine Funktion der Stimulusrichtung variiert. Die Vorzugsrichtung ist in beiden Arealen weitgehend unabhängig von der Art des verwendeten Stimulus, was darauf hindeutet, dass die Stimulusrichtung für Streifenmuster und Zufallspunktmuster in diesen Arealen durch einen einheitlichen Mechanismus bestimmt wird. Bei einer Abnahme der Stimuluskohärenz zeigen die Multiunits eine Abnahme der Feuerrate, wobei im Vergleich zu PMLS in A17 eine stärkere Abnahme der Kohärenz nötig ist, um die gleiche Abnahme der Feuerrate zu erreichen. Dieses Ergebnis konnte durch die unterschiedlichen Größen der rezeptiven Felder der beiden Areale erklärt werden und ist ein weiterer Hinweis darauf, dass eine wichtige Funktion von PMLS in der Analyse von Bewegung und räumlich verteilter Information liegt. Da beide Areale keine signifikante Änderungen der Feuerrate bei Inkohärenzniveaus von mehr als 50% zeigten, scheinen sie nicht in der Lage zu sein, die Bewegungsrichtung eines inkohärenten Zufallspunktmusters nahe der psychophysischen Detektionsschwelle von 95% auf der Basis von Feuerraten zu erkennen. Die Korrelation der Aktionspotenziale unterschiedlicher Multiunits zeigte bereits bei einer geringen Abnahme der Stimuluskohärenz eine monotone Verbreiterung des zentralen Maximums in den Korrelogrammen beider Areale. Die Stärke der Synchronisation hingegen war kaum beeinflusst. Darüberhinaus kam es zu einer Verschiebung der Leistung im lokalen Feldpotential (LFP) von hohen hin zu niedrigen Frequenzbereichen. Diese Verschiebung wurde auch für die Kopplung zwischen LFP und Akvi tionspotenzialen nachgewiesen. Diese Resultate unterstützen die Theorie, dass präzise Synchronisation und hochfrequente Oszillationen ein Mechanismus für die Bindung kohärenter Objekte sind. Sie zeigen darüber hinaus, dass Synchronisation auch nicht kohärente Stimuli binden kann und dass die Verschiebung im LFP hin zu niedrigeren Frequenzen wichtig für die Integration verteilter Information über einen größeren visuellen Raum sein kann. Da bei hohen Inkohärenzniveaus keine präzise Synchronisation mehr nachgewiesen werden konnte, kann jedoch auch die Synchronisation nicht als alleiniger Mechanismus zum Erkennen einer Bewegungsrichtung eines inkohärenten Zufallspunktmusters herangezogen werden. In den Experimenten im zweiten Teil dieser Arbeit wurde untersucht, wie das Gehirn SFM-Stimuli verarbeitet. Die Auswertungen der Feuerraten haben gezeigt, dass Multiunits in PMLS sowohl auf helligkeitsdefinierte Kontrastbalken als auch auf SFM-Balken reagieren. Die Stärke der Antwort hängt von der Kombination von Stimulus und Hintergrund und von der relativen Bewegungsrichtung zueinander ab. Während ähnliche Feuerraten für Balken mit hohem Kontrast relativ zum Hintergrund und für punktdefinierte Balken gefunden wurde, die sich über einen dunklen Hintergrund bewegten, führte ein statischer Zufallspunkthintergrund zu einer starken Abnahme der von dem SFM-Balken hervorgerufenen Antwort. Ein in die Gegenrichtung bewegter Hintergrund sowie ein reduziertes Kohärenzniveau des Zufallspunkthintergrundes führten dazu, dass die Multiunits auf den SFM- Balken nicht mehr mit einer Zunahme der Feuerraten reagierten. Um die hemmende Wirkung des Hintergrundes aufzuheben, musste der Hintergrund auf einer Fläche des visuellen Feldes, die der Größe des rezeptiven Feldes entsprach, abgedeckt werden. Dieses Ergebnis zeigt, dass die Feuerraten für diese Art Stimulus nicht wesentlich von Arealen außerhalb des rezeptiven Feldes beeinflusst werden. Zur weiteren Analyse der Fähigkeit von PMLS, SFM-Balken nur aufgrund des Bewegungskontrastes zwischen punktdefiniertem Objekt und Hintergrund zu erkennen, wurde mit Hilfe von zwei Tuningkurven-Stimuli, bei denen sich die Bewegungsrichtung der Punkte innerhalb des Balkens um 90° unterschied, die Vorzugsrichtung der Multiunits bestimmt. Die Auswertung ergab, dass sich die gemessene Vorzugsrichtung der Multiunit um 45° drehte, obwohl sich die Bewegungsrichtung des Balkens selbst nicht änderte. Darüber hinaus wurden verschiedene SFM-Stimuli untersucht, die alle dieselbe Bewegungsrichtung des Balkens, jedoch unterschiedliche Bewegungsrichtungen der Punkte innerhalb des Balkens aufwiesen. Wenn PMLS die Bewegung des SFM-Objekts statt der Bewegung der einzelnen Punkte verarbeitet, sollte die Feuerrate für alle diese Bedingungen identisch sein. Die Ergebnisse zeigen jedoch, dass sich die durch die verschiedenen SFM-Stimuli hervorgerufenen Feuerraten verringerten, je weiter sich die Punkte, die den Balken bildeten, von der Bewegungsrichtung des Balkens – und damit von der Vorzugsrichtung der Multiunit – weg bewegten. Durch dieses Ergebnis konnte gezeigt werden, dass Multiunits in PMLS nicht in der Lage sind, die Richtung von kinetisch definierten Balken zu analysieren und statt dessen nur die Bewegung der einzelnen Komponenten erfassen.
Stability, unfolding and refolding of the outer membrane protein porin from Paracoccus denitrificans was investigated using genetic and spectroscopic methods. Structural and functional activity studies on wild type and mutant porins: The site-directed mutants were constructed based on conserved residues and evidences on the role of certain amino acids from previous studies with OmpF. Secondary structure analysis of wild type and mutants E81Q, W74C, E81Q/D148N, E81Q/D148N/W74C by FTIR and CD spectroscopy are in line with the fact that porins are predominantly ß-sheet structure. The functional activity studies by black lipid bilayer techniques showed that the wild type and mutants W74C, E81Q/D148N, E81Q/D148N/W74C have a conductance of 3.25 nS. For mutant E81Q conductance of 1.25nS was more predominant over 3.25 nS. The activity of the mutants was observed to be far less than the wild type. This indicates that structural similarities does not implies similar functional activity. Thermal stability analysis of porin in detergent micelles and reconstituted into liposomes: Thermal stability analysis of wild type and mutants in detergent micelles showed changes in secondary and quaternary structure. It was found that wild type porin unfolds into aggregated structure with a high transition temperature of 86.2 °C. For mutants E81Q, W74C, E81Q/D148N the transition temperature was found to be 84.2 °C, 80.3 °C and 80.2 °C respectively. Functional activity assays at high temperatures revealed that the protein tends to loose its activity on heating up to 50 °C. This shows that structural stability does not imply functionality in the case of porins. Thermal stability analysis of porin reconstituted into liposomes showed that there was no change in the secondary and quaternary structure of the protein up to 100 °C, revealing that the protein becomes more thermostable when it is reconstituted into liposomes. Refolding of aggregated porin: This study shows that disaggregation of ß-sheet membrane protein porin is possible by changing its chemical and thermodynamic parameters. An increase of the solution pH to 12 or above results in opening up of the aggregated protein into unordered structure, as observed by FTIR and CD spectroscopy. This unordered structure could be refolded into native-like structure forming trimers. The secondary structure of the refolded protein deviated slightly from the native one. The thermal stability analysis of the native-like refolded proteins showed that the unfolding pattern is entirely different when compared to the native porins. pH dependent unfolding of porin: Thermal stability of porin at different pH values showed that the protein is stable in a pH range of 1-11. At pH 12 and above the protein unfolds into unordered structure instead of aggregating. The high pH unfolding of porin is a reversible process. The secondary structure of the refolded protein varied slightly from the native-one. Whereas thermal stability was entirely different. This shows that even though the unfolding of porin at high pH is reversible, it results in changes in local interaction between the amino acids resulting in a difference in stability. Unfolding in presence of urea and guanidinium hydrochloride (GuHCl): Denaturation of porin in the presence of chemical denaturants like urea and GuHCl showed that porin unfold into unordered structure. The unfolding is a reversible process. Unfolded protein was refolded into detergent micelles and liposomes. Refolding into detergent micelles was faster compared to refolding into liposomes, as seen by kinetic gel shift assays. The refolding into liposomes showed the presence of intermediates similar to those reported for OmpF. This study shows the difference in thermal stability of the outer membrane protein porin from Paracoccus denitrificans in detergent micelles and native-like liposomes. It suggests various unfolding pathways, which can be further investigated for unfolding and refolding kinetics. This report also suggests that it is possible to refold a heat-aggregated protein.
Results were presented from Brownian dynamics simulations for cyt c molecules approximated as spherical particles with diameter 2R ' 3.3 nm interacting with a charged planar membrane surface. Using the well-known Ermak-McCammon algorithm of ref. [36, 37] for solving the Langevin equations (see Chapter 2), a new computer program in C++ was developed. An overview of the way it is implemented is given in Chapter 3. The program in its current state is able to compute the trajectories (translation and rotation) of hundreds of spherical particles in systems with typical dimensions of 103 − 1003 nm3 . As explained in the introductory Chapter 1 the motivation for studying the dynamics of cyt c molecules in such systems came from the progress in the research of photosynthetic bacteria, e.g. While the internal processes of energy transduction (light harvesting, channelling to RC, charge separation) are quite well understood, the dynamics of soluble cyt c as an electron transporter in this context is not yet clear. In many textbooks one can find illustrations where a single cyt c is responsible for the electron transport between two integral membrane proteins (the reaction centre RC and the bc1 complex). But as pointed out in publications like refs. [49], [59], [60], [61] or [62] biological cells are crowded with different molecules. Consequently, one can assume that the electron transport between two integral membrane proteins is not simply taken on by one single cyt c molecule. Instead it is likely that many of these particles are located in a cyt c pool above the membrane and that they perform the electron transport in turns. Thus, it is desirable to have a simulation package that is able to compute the trajectories of many proteins. Note that the detailed processes of electron transfer and binding to membrane proteins are not modelled here. The details of these processes are quite complicated so that we refrained from including them in the coarse-grained simulations. Here, the actual binding is simply defined by a particle distance zb from the membrane which marks the beginning of the attractive potential. ...
Hinreichend kalte und dichte Quarkmaterie ist ein Farbsupraleiter. Ähnlich wie Elektronen in einem gewöhnlichen Supraleiter bilden Quarks Cooper-Paare. Während bei Elektronen der Austausch von Phononen zu einer Anziehung führt, ist im Falle von Quarks der Antitriplett-Kanal der starken Wechselwirkung attraktiv. Arbeiten in den letzten Jahren haben verschiedene Phasen von farbsupraleitender Quarkmaterie untersucht und sich dabei vor allem auf Phasen konzentriert, m denen der Gesamtspin eines Cooper-Paares verschwindet. In der vorliegenden Dissertation habe ich hauptsächlich Farbsupraleiter diskutiert, deren Cooper-Paare im Spin-Triplett-Kanal kondensieren, d.h. die Cooper-Paare haben den Gesamtspin 1. Diese Art von Supraleiter ist möglicherweise relevant für Systeme in der Natur, wie z.B. das Innere von Neutronensternen. Denn bei der Spin-0-Farbsupraleitung wird vorausgesetzt, dass die Fermi-Impulse zweier Quark-Flavor gleich ist oder zumindest hinreichend klein, was für realistische Systeme, also für nicht zu große Dichten, fragwürdig ist. Diese Einschränkung gibt es im Falle von Spin-1-Farbsupraleitern nicht, da hier Quarks des gleichen Flavors Cooper-Paare bilden. Ich habe in meiner Dissertation die verschiedenen möglichen Phasen eines Spin-1-Farbsupraleiters systematisch klassifiziert. Dies wurde mit Hilfe von gruppen-theoretischen Methoden durchgeführt, basierend auf der Tatsache, dass die Farbsupraleitung durch das theoretische Konzept der spontanen Symmetriebrechung beschrieben werden kann. Ähnlich wie bei supraflüssigem Helium-3 gibt es eine Vielzahl theoretisch möglicher Phasen. Ich habe die physikalischen Eigenschaften von vier dieser Phasen untersucht, nämlich der polaren und planaren Phasen sowie der A- und CSL-(color-spin-locked)Phasen. Mit Hilfe der QCD-Lückengleichung wurde die Energielücke sowie die kritische Temperatur bestimmt. Es stellt sich heraus, dass die Energielücke eines Spin-1-Farbsupraleiters um 2-3 Größenordnungen kleiner ist als die eines Spin-0-Farbsupraleiters, d.h. sie liegt im Bereich von 10 - 100 keV. Zwei besondere Eigenschaften der Energielücke werden diskutiert, nämlich eine 2-Lücken-Struktur, die in zwei der untersuchten Fälle auftritt, sowie mögliche Anisotropien, insbesondere Nullstellen der Lückenfunktion. Die Berechnung der kritischen Temperatur zeigt, dass es durchaus farbsupraleitende Materie in einer Spin-1-Phase im Innern von Neutronensternen geben kann, da die Temperatur von alten Neutronensternen im Bereich von einigen keV oder sogar darunter liegt. Darüber hinaus wurde die Frage untersucht, ob ein Farbsupraleiter auch ein gewöhnlicher Supraleiter ist. In diesem Zusammenhang ist die Frage von Interesse, ob ein Spin-1-Farbsupraleiter gewöhnliche Magnetfelder aus seinem Innern verdrängt, was sicherlich Auswirkungen auf die Observablen eines Neutronensterns hätte. Tatsächlich stellt sich heraus, dass ein Spin-1-Farbsupraleiter, im Gegensatz zu einem Spin-0-Farbsupraleiter, einen elektronmagnetischen Meissner-Effekt aufweist. Dieses Ergebnis wurde mit Hilfe von gruppentheoretischen Überlegungen vorausgesagt und mit Hilfe einer detaillierten Berechnung der Photon-Meissner-Massen bestätigt.
Transmembrane proteins play crucial roles in biological systems as active or passive channels and receptors. Experimentally only few structures could be determined so far. Gaining structural insights enables besides a general understanding of biological mechanisms also further processing such as in drug design. Due to the lack of experimental data, reliable theoretical predictions would be of high value. However, for the same reason, missing data, the knowledge-based class of prediction methods that is well established for soluble proteins can not be applied. The goal of predicting transmembrane protein structures with ab initio methods demands locating the free energy minimum. Main difficulties here are, first, the computational costs of explicitly calculating all involved interactions and, second, providing an algorithm that is capable of finding the minimum within an extremely complex and rugged energy landscape. We have developed promising energy functions that describe the interactions of amino acids on a residue level, reducing computational costs while still containing most information on the atomistic level. We have also found a way to describe the interaction of the residues with its surrounding in a realistic manner by distinguishing residues exposed to the environment from those buried within helices using a sphere algorithm. The sphere algorithm can also be applied for a different purpose: one can measure how densely sidechains are packed for certain helical conformations, and thereby get an estimate of the sidechain entropy. In addition, overcrowding effects can be identified which are not well-described by the energy functions due to the pairwise calculation. To determine the absolute free energy minimum, we assume the helices to be located on an equidistance grid with slightly larger distances than to be expected. Optimizing the helices on the grid provides a starting point that should enable common minimizing algorithms, gradient-based or not, to find the absolute minimum beyond the grid. To simulate the dynamics of the helices on large time scales, we split them into rigid body dynamics and internal dynamics in terms of the dihedrals. The former one is well-known with its inherent problem of numerical drift and plenty of approaches to it, among which we have chosen the quaternions to represent the rotation of the rigid bodies. The latter one requires a detailed analysis of the torque size exerted on the dihedrals caused by the forces acting on the residues.
In this thesis the anti-proton to proton ratio in 197Au + 197Au collisions, measured at mid-rapidity, at a center of mass energy of psNN = 200GeV is reported. The value was measured to be ¹p/p = 0.81+-0.002stat +- 0.05syst: in the 5% most central collisions. The ratio shows no dependence on rapidity in the range jyj < 0:5. Furthermore, a dependence on transverse momentum within 0:4< p? < 1:0 GeV/c is not observed. At higher p?, a slight drop in the ratio is observed. In the present analysis, the highest momentum considered is p? = 4:5 GeV/c yielding ¹p=p = 0:645§0:005stat: §0:10syst:. However, the systematic error is higher in this momentum range. A slight centrality dependence was observed, where a decrease from ¹p=p = 0:83§0:002stat:§0:05syst: for most peripheral collisions (less than 80% central) to ¹p=p = 0:78§0:002stat:§0:05syst: for the 5% most central collisions was measured. An estimate of the feed-down contributions fromthe decay of heavier strange baryons results in ¹p=p = 0:77 § 0:05syst:. The measured ratio indicates a » 12:5 times higher value compared to the highest SPS energy of psNN = 17:3 and an \almost net-baryon free" region, at mid- rapidity. The asymmetry of protons and anti-protons may be explained by the contribution ofvalence quarks in a nucleus break-up picture. In such a scenario, the absolute value of the ratio and the fact that the ratio does not depend on rapidity (at mid-rapidity) is well reproduced. Fragmentation of quarks and anti- quarks into protons and anti-protons is assumed. An estimate of the ratio, when feed-down correction is taken into consideration, agrees well with the prediction of a statistical model analysis at a temperature of T = 177 § 7 MeV and a baryon chemical potential of ¹B = 29 § 8 MeV. The temperature achieved is only slightly higher when compared to the top SPS energy, while the baryochemical potential is factor »10 lower. As in the case of the SPS results, these parameters are close to the phase boundary of Figure 1.6. The measurement of the ratio at high transverse momentum was of special in- terest in this analysis, since at RHIC energies, the cross section for hadrons at high transverse momentum is increased with respect to SPS energies. The weak dependence of the ratio on the transverse momentum is well described by the non- perturbative quenched and baryon junction scenario (i.e. Soft+Quench model), where baryon creation is enhanced by baryon junctions. In comparison the ratio does not decrease within the considered momentum range as predicted by pQCD.
Cytochrome c oxidase is the terminal enzyme in the respiratory chain of mitochondria and aerobic bacteria. This enzyme ultimately couples electron transfer from cytochrome c to an oxygen molecule with proton translocation across the inner mitochondrial and bacterial membrane. This reaction requires complicated chemical processes to occur at the catalytic site of the enzyme in coordination with proton translocation, the exact mechanism of which is not known at present. The mechanisms underlying oxygen activation, electron transfer and coupling of electron transfer to proton translocation are the main questions in the field of bioenergetics. The major goal of this work was to investigate the coupling of electron transfer and proton translocation in cytochrome c oxidase from Paracoccus denitrificans. Different theoretical approaches have been used to investigate the coupling of electron and proton transfer. This thesis presents an internal water prediction scheme in the enzyme and a molecular dynamics study of cytochrome c oxidase from Paracoccus denitrificans in the fully oxidized state, embedded in a fully hydrated dimyristoylphosphatidylcholine lipid bilayer membrane. Two parallel molecular dynamics simulations with different levels of protein hydration, 1.125 ns each in length, were carried out under conditions of constant temperature and pressure using three-dimensional periodic boundary conditions and full electrostatics to investigate the distribution and dynamics of water molecules and their corresponding hydrogen-bonded networks inside cytochrome c oxidase. The average number of solvent sites in the proton conducting K- and D- pathways was determined. The highly fluctuating hydrogen-bonded networks, combined with the significant diffusion of individual water molecules provide a basis for the transfer of protons in cytochrome c oxidase, therefore leading to a better understanding of the mechanism of proton pumping. The importance of the hydrogen bonding network and the possible coupling of local structural changes to larger scale changes in the cytochrome c oxidase during the catalytic cycle have been shown.
Die Infrarotspektroskopie in Verbindung mit photoaktivierbaren Substraten wurde zur Untersuchung von Substrat-Protein-Wechselwirkungen eingesetzt. Dabei wurden Konformationsänderungen der Ca2+-ATPase des Sarkoplasmatischen Retikulums bei Bindung des Nukleotids, der Phosphorylierung der ATPase und der Hydrolyse des Phosphoenzyms beobachtet. Verwender wurden das native Substrat ATP und seine Analoga ADP, AMPPNP, 2'-deoxyATP, 3'-deoxyATP, ITP, AMP, Pyrophosphat, Ribosetriphosphat und TNP-AMP beobachtet. Diese Analoga waren an spezifischen funktionellen Gruppen des Substrats ATP modifiziert. Modifikation der 2'- und 3'-OH Gruppe des Ribosetriphosphats, der beta- und gamma-Phosphatgruppe und der Aminogruppe des Adenins reduzieren das Ausmaß an bindungsinduzierten Konformationsänderungen. Ein besonders starker Effekt wird für die 3'-OH Gruppe und die Aminogruppe des Adenins beobachtet. Dies zeigt die strukturelle Empfindlichkeit des Nukleotid-ATPase Komplexes auf einzelne Wechselwirkungen zwischen dem Nukleotid und der ATPase. Die Wechselwirkungen einer bestimmten Ligandengruppe mit der ATPase hängen von Wechselwirkungen anderer Ligandengruppen mit die ATPase ab. Die TNP-AMP Bindung verursacht teilweise gegenläufige und kleinere Konformationsänderungen verglichen mit ATP. Die Bindungweise von TNP-AMP ist unterschiedlich zu der von ATP, AMPPNP und anderen Tri- und Diphosphat Nucleotiden. Die Phosphorylierung der ATPase wurde mit ITP und 2'-deoxyATP beobachtet. Ca2E1P wurde in gleichem Ausmaß mit ITP und 2'-deoxyATP wie mit ATP akkumuliert, obwohl das Ausmaß der Konformationsänderungen bei Ca2E1P-Bildung geringer ist. Änderungen der 2'- und 3'-OH des Ribosetriphosphats und der Aminogruppe des Adenins beeinflussen die Reaktionsgeschwindigkeit der Phosphorylierung der ATPase. Es gibt keine direkte Verbindung zwischen dem Ausmaß der Konformationsänderung bei Nukleotid- Bindung und der Rate der Phosphorylierung. Das volle Ausmaß der ATP-induzierten Konformationsänderung ist nicht zwingend für die Phosphorylierung. Die Konformationen von Ca2E1N und Ca2E1P hängen vom Nukleotid ab. Dies weist darauf hin, dass die Struktur von ATPase Zuständen heterogener ist, als bisher erwartet. Die Aussagekraft und der Reichtum an Informationen in den Infrarotspektren zeigen, dass hiermit eine leistungsfähige Methode für die Untersuchung von Enzym-Substrat-Wechsel-Wirkungen und das räumliche Abtasten von Bindungstaschen zur Verfügung steht.
Im ersten Teil dieser Arbeit sind Protein-Protein Docking-Studien dokumentiert. Bis heute konnten die meisten Protein-Komplex-Strukturen nicht experimentell aufgeklärt werden, so auch die beiden oben genannten Elektrontransfer-Komplexe. Nach einem erfolgreichen Test wurden verschiedene Cytochrom c Oxidase:Cytochrom c Paare mit der gleichen Methode gedockt: COX aus Paracoccus denitrificans mit Pferdeherz Cytochrom c und COX mit dem löslichen Fragment des membrangebundenen Cytochrom C552 (beide aus P. denitrificans). Im zweiten Teil dieser Arbeit wurde die diffusive Annäherung des Cytochrom c an die Cytochrom c Qxidase mit der Brownschen Dynamik Methode simuliert. Die Diffusionsbewegung eines Brownschen Teilchens in wässriger Lösung wird durch die Langevin-Gleichung bestimmt. Der auf dieser Gleichung fußende Ermak-McCammon-Algorithmus ist Grundlage der Simulationsmethode. Die so ermittelten Raten für COX und Pferdeherz, sowie für COX und Cytochrom C552, wurden dann mit experimentell gewonnenen Raten verglichen. Da die Elektrostatik für den Annäherungsprozeß dieser Proteine eine so gewichtige Rolle spielt, wirken sich Mutationen, die mit einer Ladungsänderung einhergehen, merklich aus. Dies ist vor allem dann der Fall, wenn sich die Mutation in der Nähe der Bindungsstelle befindet. Aus dem gleichen Grund ist die Assoziationsrate auch stark von der Ionenstärke der umgebenden Lösung abhängig. Steigt die Ionenkonzentration wird die elektrostatische Komplementarität der Bindingsstellen der beiden Makromoleküle stärker abgeschirmt, und die Rate sinkt. Diese beiden relativen Trends konnten durch die Simulationen gut reproduziert und bestätigt werden. Allerdings liegen die absoluten Resultate merklich über den experimentell gemessenen Raten. Es ist sehr gut möglich, daß post-diffusive Effekte, die nicht in einer Brownschen Dynamik Simulation von starren Körpern berücksichtigt werden können, die Raten erniedrigen. Um den Einfluß der Membranumgebung auf die Wechselwirkung des Elektrontransportsystems zu untersuchen. wurde eine DPPC Doppelschicht um die Oxidase modelliert und energieminimiert. Mit Poisson-Boltzmann Rechnungen wurde das elektrostatische Potential dieses Nanosystems untersucht und mit dem der einzelnen Oxidase verglichen. Durch einen modifizierten Set-up konnten dann auch für dieses Membransystem Brownsche Dynamik Simulationen durchgeführt werden. Der Vergleich mit den vorhergehenden Simulationen ohne Membran erbrachte bemerkenswerte Ergebnisse. Während die Assoziationsraten für Pferdeherz Cytochrom c durch den Membraneinfluß erniedrigt wurden, stiegen sie im Fall des physiologischen Transferpartners c552. Pferdeherz Cytochrom c weist eine positive Nettoladung und einen ausgeprägten bipolaren Charakter auf. Eine große Zahl positiv geladener Seitenketten befindet sich auf der gleichen Hemisphäre wie die Bindungsstelle. Obwohl die DPPC Lipidmoleküle neutral sind, zeigten die Elektrostatikrechnungen, daß die Membranoberfläche abstoßend auf positive Ladungen wirkt. Da sich nun die Bindungsstelle der Oxidase für Cytochrom c nur etwa 10 Å oberhalb der Membran befindet, verringert sich die Wahrscheinlichkeit der Assoziation.